Gcaud1421.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1421.t1
Unique Name	Gcaud1421.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_653_length_20221_cov_4.515748	contig	NODE_653_length_20221_cov_4.515748:14072..15583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9361.ENSDNOP00000006243
Preferred name	FH
PFAMs	FumaraseC_C,Lyase_1
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00443
KEGG ko	ko:K01679
KEGG Reaction	R01082
KEGG Pathway	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG Module	M00009,M00011,M00173,M00376
GOs	GO:0001894,GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048871,GO:0048872,GO:0048873,GO:0055114,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072350
Evalue	3.66e-239
EggNOG OGs	COG0114@1\|root,KOG1317@2759\|Eukaryota,38GHX@33154\|Opisthokonta,3BB3C@33208\|Metazoa,3CUSS@33213\|Bilateria,487GR@7711\|Chordata,490UB@7742\|Vertebrata,3J6FA@40674\|Mammalia
EC	4.2.1.2
Description	Fumarate hydratase
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1421	Gcaud1421	Gracilaria caudata M_176_S67 male	gene	NODE_653_length_20221_cov_4.515748 14072..15583 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1421.t1.start1	Gcaud1421.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_653_length_20221_cov_4.515748 14072..14074 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1421.t1.CDS1	Gcaud1421.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_653_length_20221_cov_4.515748 14072..15583 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1421.t1.exon1	Gcaud1421.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_653_length_20221_cov_4.515748 14072..15583 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1421.t1.stop1	Gcaud1421.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_653_length_20221_cov_4.515748 15581..15583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1421.t1	Gcaud1421.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_653_length_20221_cov_4.515748 14072..15583 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+
coding sequence from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+

mRNA sequence

>Gcaud1421.t1 ID=Gcaud1421.t1|Name=Gcaud1421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp
MQSVAFAMPFTRPPNALILRLFRPPLQSRSVRPFHASLPAMSHRIETDTF
GEIKVPADRYWGAQTQRSITNFDICKDTDRMPLPVIHAFGILKHATAFAN
RTYGLDQSVANAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVNEVI
SNRAIELLGGERGSKTPVHPNDHVNKSQSSNDTFPTAMHIALAREINARL
IPSLTSLADAFDSKAEQYQHIIKIGRTHCMDAVPLTYGQQFSAYVRQLRQ
AVCRIRACLPDVYELAIGGTAVGTGLNTRIGFAEKVADKVAELTGLPFVS
AENKFEALAAHDAVVFASGALNTAATSLMKIANDIRLLGSGPRCGLGELE
LPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAITVGGTNGHFELNV
FKPMMIHNVLHSVRLLSDCATSFEKNCIQGLQVNEKKVAQLLTESLMLVT
ALNPVIGYDKAAQIAKKAHKEGSTLREAAVSLGILSADKFDEVVVPANMI
GPK*

spliced messenger RNA

>Gcaud1421.t1 ID=Gcaud1421.t1|Name=Gcaud1421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCTGTCGCTTTTGCCATGCCATTCACCCGCCCGCCCAACGCACT
CATTCTCCGCCTCTTCCGACCACCGCTTCAATCTCGCTCCGTGCGGCCGT
TCCACGCATCGCTCCCCGCCATGTCGCACCGCATCGAGACCGATACCTTT
GGCGAGATTAAAGTGCCTGCCGATCGCTACTGGGGAGCACAGACACAGCG
ATCCATCACTAACTTTGATATTTGTAAAGACACCGATCGAATGCCTTTGC
CAGTTATCCATGCTTTCGGAATCCTTAAACACGCCACAGCCTTTGCAAAT
CGAACGTACGGACTCGATCAATCCGTAGCGAACGCCATTGAAAccgctgc
cgccgacgtcgccgccgGAAAGCTTGACGACCATTTCCCGCTCGTCGTAT
GGCAGACTGGTTCCGGCACCCAATCTAACATGAACGTCAACGAAGTAATT
TCTAACAGAGCCATCGAGCTCCTCGGTGGAGAACGCGGTTCAAAAACCCC
CGTCCATCCAAATGATCACGTTAACAAGTCCCAATCTTCAAACGATACCT
TTCCGACCGCCATGCACATCGCGCTCGCGCGCGAAATAAACGCTCGTCTT
ATTCCCTCACTTACCTCTCTCGCTGATGCTTTTGATAGCAAAGCTGAGCA
ATACCAGCATATCATCAAAATTGGCCGCACTCACTGTATGGACGCCGTCC
CTCTCACCTACGGCCAGCAATTCTCTGCGTACGTTCGACAGCTTCGTCAG
GCTGTGTGTCGAATTCGCGCCTGTTTGCCGGACGTTTACGAGCTTGCCAT
TGGTGGCACCGCCGTTGGAACCGGCCTCAACACTAGAATCGGCTTTGCTG
AGAAGGTTGCGGACAAAGTCGCCGAACTTACTGGACTGCCGTTTGTGTCC
GCTGAGAATAAGTTTGAAGCGTTGGCCGCACATGATGCCGTCGTTTTCGC
GAGTGGCGCGTTGAATACTGCTGCTACTTCACTTATGAAGATTGCTAATG
ACATTCGACTACTGGGATCTGGACCGCGATGTGGGCTCGGTGAACTCGAG
TTGCCCGAAAATGAACCTGGAAGTTCCATCATGCCTGGGAAAGTGAATCC
GACGCAATGCGAGGCTGTTACTATGGCATGTGCGCAGGTGATCGGCAATC
ACGTCGCAATCACTGTTGGCGGTACGAATGGCCACTTTGAGCTGAACGTA
TTCAAACCTATGATGATTCACAACGTTCTTCATAGCGTCAGATTACTCAG
TGACTGTGCGACTTCGTTCGAAAAGAACTGCATTCAAGGACTCCAGGTGA
ATGAGAAGAAAGTTGCCCAACTCTTGACTGAGAGTTTGATGTTGGTGACT
GCTTTGAATCCTGTTATTGGATATGACAAAGCCGCGCAGATTGCTAAAAA
GGCGCACAAGGAAGGCAGTACACTACGGGAAGCGGCTGTGTCTCTTGGCA
TTTTATCGGCAGACAAATTCGATGAGGTTGTTGTACCCGCAAATATGATC
GGACCAAAGTAA

protein sequence of Gcaud1421.t1

>Gcaud1421.t1 ID=Gcaud1421.t1|Name=Gcaud1421.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=504bp
MQSVAFAMPFTRPPNALILRLFRPPLQSRSVRPFHASLPAMSHRIETDTF
GEIKVPADRYWGAQTQRSITNFDICKDTDRMPLPVIHAFGILKHATAFAN
RTYGLDQSVANAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVNEVI
SNRAIELLGGERGSKTPVHPNDHVNKSQSSNDTFPTAMHIALAREINARL
IPSLTSLADAFDSKAEQYQHIIKIGRTHCMDAVPLTYGQQFSAYVRQLRQ
AVCRIRACLPDVYELAIGGTAVGTGLNTRIGFAEKVADKVAELTGLPFVS
AENKFEALAAHDAVVFASGALNTAATSLMKIANDIRLLGSGPRCGLGELE
LPENEPGSSIMPGKVNPTQCEAVTMACAQVIGNHVAITVGGTNGHFELNV
FKPMMIHNVLHSVRLLSDCATSFEKNCIQGLQVNEKKVAQLLTESLMLVT
ALNPVIGYDKAAQIAKKAHKEGSTLREAAVSLGILSADKFDEVVVPANMI
GPK*

mRNA from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1421.t1 ID=Gcaud1421.t1|Name=Gcaud1421.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+ (Gracilaria caudata M_176_S67 male)
ATGCAATCTGTCGCTTTTGCCATGCCATTCACCCGCCCGCCCAACGCACT
CATTCTCCGCCTCTTCCGACCACCGCTTCAATCTCGCTCCGTGCGGCCGT
TCCACGCATCGCTCCCCGCCATGTCGCACCGCATCGAGACCGATACCTTT
GGCGAGATTAAAGTGCCTGCCGATCGCTACTGGGGAGCACAGACACAGCG
ATCCATCACTAACTTTGATATTTGTAAAGACACCGATCGAATGCCTTTGC
CAGTTATCCATGCTTTCGGAATCCTTAAACACGCCACAGCCTTTGCAAAT
CGAACGTACGGACTCGATCAATCCGTAGCGAACGCCATTGAAAccgctgc
cgccgacgtcgccgccgGAAAGCTTGACGACCATTTCCCGCTCGTCGTAT
GGCAGACTGGTTCCGGCACCCAATCTAACATGAACGTCAACGAAGTAATT
TCTAACAGAGCCATCGAGCTCCTCGGTGGAGAACGCGGTTCAAAAACCCC
CGTCCATCCAAATGATCACGTTAACAAGTCCCAATCTTCAAACGATACCT
TTCCGACCGCCATGCACATCGCGCTCGCGCGCGAAATAAACGCTCGTCTT
ATTCCCTCACTTACCTCTCTCGCTGATGCTTTTGATAGCAAAGCTGAGCA
ATACCAGCATATCATCAAAATTGGCCGCACTCACTGTATGGACGCCGTCC
CTCTCACCTACGGCCAGCAATTCTCTGCGTACGTTCGACAGCTTCGTCAG
GCTGTGTGTCGAATTCGCGCCTGTTTGCCGGACGTTTACGAGCTTGCCAT
TGGTGGCACCGCCGTTGGAACCGGCCTCAACACTAGAATCGGCTTTGCTG
AGAAGGTTGCGGACAAAGTCGCCGAACTTACTGGACTGCCGTTTGTGTCC
GCTGAGAATAAGTTTGAAGCGTTGGCCGCACATGATGCCGTCGTTTTCGC
GAGTGGCGCGTTGAATACTGCTGCTACTTCACTTATGAAGATTGCTAATG
ACATTCGACTACTGGGATCTGGACCGCGATGTGGGCTCGGTGAACTCGAG
TTGCCCGAAAATGAACCTGGAAGTTCCATCATGCCTGGGAAAGTGAATCC
GACGCAATGCGAGGCTGTTACTATGGCATGTGCGCAGGTGATCGGCAATC
ACGTCGCAATCACTGTTGGCGGTACGAATGGCCACTTTGAGCTGAACGTA
TTCAAACCTATGATGATTCACAACGTTCTTCATAGCGTCAGATTACTCAG
TGACTGTGCGACTTCGTTCGAAAAGAACTGCATTCAAGGACTCCAGGTGA
ATGAGAAGAAAGTTGCCCAACTCTTGACTGAGAGTTTGATGTTGGTGACT
GCTTTGAATCCTGTTATTGGATATGACAAAGCCGCGCAGATTGCTAAAAA
GGCGCACAAGGAAGGCAGTACACTACGGGAAGCGGCTGTGTCTCTTGGCA
TTTTATCGGCAGACAAATTCGATGAGGTTGTTGTACCCGCAAATATGATC
GGACCAAAGTAA

Coding sequence (CDS) from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+

>Gcaud1421.t1 ID=Gcaud1421.t1|Name=Gcaud1421.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1512bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:14072..15583+ (Gracilaria caudata M_176_S67 male)
ATGCAATCTGTCGCTTTTGCCATGCCATTCACCCGCCCGCCCAACGCACT
CATTCTCCGCCTCTTCCGACCACCGCTTCAATCTCGCTCCGTGCGGCCGT
TCCACGCATCGCTCCCCGCCATGTCGCACCGCATCGAGACCGATACCTTT
GGCGAGATTAAAGTGCCTGCCGATCGCTACTGGGGAGCACAGACACAGCG
ATCCATCACTAACTTTGATATTTGTAAAGACACCGATCGAATGCCTTTGC
CAGTTATCCATGCTTTCGGAATCCTTAAACACGCCACAGCCTTTGCAAAT
CGAACGTACGGACTCGATCAATCCGTAGCGAACGCCATTGAAAccgctgc
cgccgacgtcgccgccgGAAAGCTTGACGACCATTTCCCGCTCGTCGTAT
GGCAGACTGGTTCCGGCACCCAATCTAACATGAACGTCAACGAAGTAATT
TCTAACAGAGCCATCGAGCTCCTCGGTGGAGAACGCGGTTCAAAAACCCC
CGTCCATCCAAATGATCACGTTAACAAGTCCCAATCTTCAAACGATACCT
TTCCGACCGCCATGCACATCGCGCTCGCGCGCGAAATAAACGCTCGTCTT
ATTCCCTCACTTACCTCTCTCGCTGATGCTTTTGATAGCAAAGCTGAGCA
ATACCAGCATATCATCAAAATTGGCCGCACTCACTGTATGGACGCCGTCC
CTCTCACCTACGGCCAGCAATTCTCTGCGTACGTTCGACAGCTTCGTCAG
GCTGTGTGTCGAATTCGCGCCTGTTTGCCGGACGTTTACGAGCTTGCCAT
TGGTGGCACCGCCGTTGGAACCGGCCTCAACACTAGAATCGGCTTTGCTG
AGAAGGTTGCGGACAAAGTCGCCGAACTTACTGGACTGCCGTTTGTGTCC
GCTGAGAATAAGTTTGAAGCGTTGGCCGCACATGATGCCGTCGTTTTCGC
GAGTGGCGCGTTGAATACTGCTGCTACTTCACTTATGAAGATTGCTAATG
ACATTCGACTACTGGGATCTGGACCGCGATGTGGGCTCGGTGAACTCGAG
TTGCCCGAAAATGAACCTGGAAGTTCCATCATGCCTGGGAAAGTGAATCC
GACGCAATGCGAGGCTGTTACTATGGCATGTGCGCAGGTGATCGGCAATC
ACGTCGCAATCACTGTTGGCGGTACGAATGGCCACTTTGAGCTGAACGTA
TTCAAACCTATGATGATTCACAACGTTCTTCATAGCGTCAGATTACTCAG
TGACTGTGCGACTTCGTTCGAAAAGAACTGCATTCAAGGACTCCAGGTGA
ATGAGAAGAAAGTTGCCCAACTCTTGACTGAGAGTTTGATGTTGGTGACT
GCTTTGAATCCTGTTATTGGATATGACAAAGCCGCGCAGATTGCTAAAAA
GGCGCACAAGGAAGGCAGTACACTACGGGAAGCGGCTGTGTCTCTTGGCA
TTTTATCGGCAGACAAATTCGATGAGGTTGTTGTACCCGCAAATATGATC
GGACCAAAGTAA