Gcaud1419.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1419.t1
Unique Name	Gcaud1419.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_653_length_20221_cov_4.515748	contig	NODE_653_length_20221_cov_4.515748:10439..11239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	90675.XP_010413544.1
PFAMs	Cyclin
Max annot lvl	35493\|Streptophyta
Evalue	1.47e-13
EggNOG OGs	KOG1674@1\|root,KOG1674@2759\|Eukaryota,37K82@33090\|Viridiplantae,3G88K@35493\|Streptophyta,3HQ6Y@3699\|Brassicales
Description	regulation of cyclin-dependent protein serine/threonine kinase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1419	Gcaud1419	Gracilaria caudata M_176_S67 male	gene	NODE_653_length_20221_cov_4.515748 10439..11239 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1419.t1.start1	Gcaud1419.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_653_length_20221_cov_4.515748 10439..10441 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1419.t1.CDS1	Gcaud1419.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_653_length_20221_cov_4.515748 10439..11239 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1419.t1.exon1	Gcaud1419.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_653_length_20221_cov_4.515748 10439..11239 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1419.t1.stop1	Gcaud1419.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_653_length_20221_cov_4.515748 11237..11239 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1419.t1	Gcaud1419.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_653_length_20221_cov_4.515748 10439..11239 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+
coding sequence from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+

mRNA sequence

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=267bp
MPPLSSAQAQLLPAYRRRQRRKRDWITMALEQVTPEQIMMPATGGATQLR
LLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDA
RSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQR
LCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEH
EFLRRLQWNCWVSVDTFEEYDSAVFSENADARVVDAQAAVALESAAVSAA
RTLSRMTGGAESSSHV*

spliced messenger RNA

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgccgccactctcttccgcgcaagcacagttgcttccggcgtatcgtcg
tcgacagcgacggaaacgagattggatcaccatggcgttggaacaggtca
cgcccgagcagattatgatgcccgccaccggcggtgcgacgcaactgcgt
ctGCTGCTGCCGCAGTTTGAGCCGCCCTCCAGCTCGGCCGCCGATAACTA
CAACTCGCTGTTCATTGTGCGCGCGCTCTCTGACGTGCTCCAGCGCACAT
GCGATCGCAACGCCGCCTGCACGCTGCAGCCGAACCCACATATCGATGCT
CGTTCCACCAACATGTTCTACAGTTGCACAGTAGCGCCCTTTTCGCTTTC
GTGTTACGTCTACCAGCTTGTGACCCAACTCAAGCTCAGTCGCAGTGTGT
ACATTGTGGCGTTGGTGTTTCTCGATCGTGTGCGGCTGGTGGATCAGCGT
CTGTGTCTCATTCATCTCAACGTGCACCGCGTTCTGGCCACCGCGCTGTG
TCTGGCCGACAAGGTGTTGGAAGACGAATGTCATCGCAACTCGTCGTTCT
GCGCCATTGCTGGAATCCCGTGCACTTCTGAGCTCAACCTGATGGAGCAC
GAGTTTCTGCGAAGACTGCAATGGAACTGTTGGGTGTCTGTGGACACTTT
CGAAGAGTATGATAGCGCGGTGTTTAGTGAGAATGCTGACGCGCGTGTTG
TGGACGCTCAGGCAGCCGTTGCGTTGGAATCTGCAGCCGTGAGTGCGGCA
CGCACGTTGTCGAGGATGACCGGTGGCGCCGAGAGCTCTTCCCATGTGTA
A

protein sequence of Gcaud1419.t1

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MPPLSSAQAQLLPAYRRRQRRKRDWITMALEQVTPEQIMMPATGGATQLR
LLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDA
RSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQR
LCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEH
EFLRRLQWNCWVSVDTFEEYDSAVFSENADARVVDAQAAVALESAAVSAA
RTLSRMTGGAESSSHV*

mRNA from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=801bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+ (Gracilaria caudata M_176_S67 male)
atgccgccactctcttccgcgcaagcacagttgcttccggcgtatcgtcg
tcgacagcgacggaaacgagattggatcaccatggcgttggaacaggtca
cgcccgagcagattatgatgcccgccaccggcggtgcgacgcaactgcgt
ctGCTGCTGCCGCAGTTTGAGCCGCCCTCCAGCTCGGCCGCCGATAACTA
CAACTCGCTGTTCATTGTGCGCGCGCTCTCTGACGTGCTCCAGCGCACAT
GCGATCGCAACGCCGCCTGCACGCTGCAGCCGAACCCACATATCGATGCT
CGTTCCACCAACATGTTCTACAGTTGCACAGTAGCGCCCTTTTCGCTTTC
GTGTTACGTCTACCAGCTTGTGACCCAACTCAAGCTCAGTCGCAGTGTGT
ACATTGTGGCGTTGGTGTTTCTCGATCGTGTGCGGCTGGTGGATCAGCGT
CTGTGTCTCATTCATCTCAACGTGCACCGCGTTCTGGCCACCGCGCTGTG
TCTGGCCGACAAGGTGTTGGAAGACGAATGTCATCGCAACTCGTCGTTCT
GCGCCATTGCTGGAATCCCGTGCACTTCTGAGCTCAACCTGATGGAGCAC
GAGTTTCTGCGAAGACTGCAATGGAACTGTTGGGTGTCTGTGGACACTTT
CGAAGAGTATGATAGCGCGGTGTTTAGTGAGAATGCTGACGCGCGTGTTG
TGGACGCTCAGGCAGCCGTTGCGTTGGAATCTGCAGCCGTGAGTGCGGCA
CGCACGTTGTCGAGGATGACCGGTGGCGCCGAGAGCTCTTCCCATGTGTA
A

Coding sequence (CDS) from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=801bp|location=Sequence derived from alignment at NODE_653_length_20221_cov_4.515748:10439..11239+ (Gracilaria caudata M_176_S67 male)
atgccgccactctcttccgcgcaagcacagttgcttccggcgtatcgtcg
tcgacagcgacggaaacgagattggatcaccatggcgttggaacaggtca
cgcccgagcagattatgatgcccgccaccggcggtgcgacgcaactgcgt
ctGCTGCTGCCGCAGTTTGAGCCGCCCTCCAGCTCGGCCGCCGATAACTA
CAACTCGCTGTTCATTGTGCGCGCGCTCTCTGACGTGCTCCAGCGCACAT
GCGATCGCAACGCCGCCTGCACGCTGCAGCCGAACCCACATATCGATGCT
CGTTCCACCAACATGTTCTACAGTTGCACAGTAGCGCCCTTTTCGCTTTC
GTGTTACGTCTACCAGCTTGTGACCCAACTCAAGCTCAGTCGCAGTGTGT
ACATTGTGGCGTTGGTGTTTCTCGATCGTGTGCGGCTGGTGGATCAGCGT
CTGTGTCTCATTCATCTCAACGTGCACCGCGTTCTGGCCACCGCGCTGTG
TCTGGCCGACAAGGTGTTGGAAGACGAATGTCATCGCAACTCGTCGTTCT
GCGCCATTGCTGGAATCCCGTGCACTTCTGAGCTCAACCTGATGGAGCAC
GAGTTTCTGCGAAGACTGCAATGGAACTGTTGGGTGTCTGTGGACACTTT
CGAAGAGTATGATAGCGCGGTGTTTAGTGAGAATGCTGACGCGCGTGTTG
TGGACGCTCAGGCAGCCGTTGCGTTGGAATCTGCAGCCGTGAGTGCGGCA
CGCACGTTGTCGAGGATGACCGGTGGCGCCGAGAGCTCTTCCCATGTGTA
A