Gcaud1419.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1419.t1
Unique NameGcaud1419.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length267
Homology
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A2V3J1G6_9FLOR (Cyclin-U2-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1G6_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 5.200e-84
Identity = 142/246 (57.72%), Postives = 175/246 (71.14%), Query Frame = 0
Query:   21 RKRDWITMALEQVTPEQIMMPATGGATQLRLLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAVFSENAD---------ARVVDAQAAVALESAAVSAARTLSRMT 257
            RKR W+ MALE ++PEQ ++  +  A+   +   +FEP S      Y+  +I  ALS+VLQRTCDRN  C LQ NP +DARSTNMFY+   APFSLSCYV+ L+++LKLSRSVY+VAL++LDRVRLVDQ+LCL H+NVHR+LATALCLADK +EDE HRN++ C I G+   +ELN ME  FL R+QWNCWVS  TF EY+ A+F  NA          A    A AAVAL +AAV AARTLS MT
Sbjct:   12 RKRHWLAMALEHLSPEQRVI-CSNSASVYAVHHAEFEP-SPQPTSAYSYAYIGEALSNVLQRTCDRNGGCVLQANPRLDARSTNMFYNSCAAPFSLSCYVFHLLSRLKLSRSVYVVALIYLDRVRLVDQKLCLTHMNVHRILATALCLADKYVEDESHRNNALCCIMGMSHVAELNAMEAAFLHRIQWNCWVSEHTFCEYEHALFGRNAPSPPHSSSAPAPADHAHAAVALHTAAVDAARTLSMMT 255          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A1X6NWM5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWM5_PORUM)

HSP 1 Score: 95.1 bits (235), Expect = 1.880e-18
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 0
Query:  104 NMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEY 220
            ++F+S      S++ YV +L+  + +S SV+IVALV+LDR+   D RL L  LN+HR+L  A+ LA K +ED  HRNS    + GIP  +E+N +E E LRRL W   VS D F+ Y
Sbjct:  440 SIFFSLVKPSVSVAFYVARLLRYVHVSPSVFIVALVYLDRLGAGDARLLLTPLNMHRLLLAAVTLASKFVEDRAHRNSWLARVGGIPSQTEMNRLEVETLRRLDWRLAVSPDVFDMY 556          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A1X6NRH4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NRH4_PORUM)

HSP 1 Score: 93.2 bits (230), Expect = 6.960e-18
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 0
Query:   75 ALSDVLQRTCDRNAACTLQPNPHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAV 224
            A+S VL R  D NA  +    P       + F+S +  PF+L  YV +LVT  + SRS Y+ A V+LDR+  V   L +  +NVHR+L +AL +A KVL+D+ +  + +C + GIP   E   +E   LR L +   V VD +  Y+  +
Sbjct:  358 AISSVLGRWIDANAHASGHRPPPASDDPLSQFFSSSRQPFTLLYYVRRLVTHTRCSRSAYVAAFVYLDRLAAVAPALAVRSMNVHRLLLSALVVAVKVLDDDVYSAAYYCRVGGIPSVGEYVALEATLLRLLGFRVAVGVDVYHAYEKGI 507          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A2V3IT02_9FLOR (Cyclin-P3-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT02_9FLOR)

HSP 1 Score: 81.6 bits (200), Expect = 1.840e-14
Identity = 53/155 (34.19%), Postives = 86/155 (55.48%), Query Frame = 0
Query:   66 NYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEY 220
            ++N   +V AL   L   C RN      P+   ++   + F+S    PF L+ YV +LV     S S +I+AL++L++V+ V  +L L  +N+HR+++TAL LA K L+D+   N+ +  +AG+  T+E+N +E   L  L W   VS  TF  +
Sbjct:  117 DWNDDQLVSALCAHLSAVCHRNEQAADTPHT-TNSDKYHHFFSQYRQPFHLTFYVTRLVQYSNTSPSAFILALIYLEKVKSVAPQLALTDMNLHRLVSTALVLAIKYLDDQVFSNAYYARVAGVT-TAEINQLELSMLTLLNWQLSVSTSTFSAH 269          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A5J4YXN5_PORPP (Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXN5_PORPP)

HSP 1 Score: 77.0 bits (188), Expect = 5.060e-13
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 0
Query:  105 MFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAVFS 226
            +FYS     F+L  Y+ ++VT +  S S++I+AL FL R R  D  L L   NVHR+  TA+ LA K+LEDE + N  +  + G+P   E+N +E + L++L ++  V    + E  + V +
Sbjct:  134 IFYSAQKQKFALVKYIQRVVTLVSGSSSIFILALCFLQRARKADTLLALHDYNVHRLWITAVVLASKMLEDEVYSNEHYAKMGGVPSLVEMNRLEAQLLKKLNFSLCVPETEYLEMRARVLA 255          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A7S0T7Z7_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T7Z7_9RHOD)

HSP 1 Score: 76.6 bits (187), Expect = 7.360e-13
Identity = 56/204 (27.45%), Postives = 89/204 (43.63%), Query Frame = 0
Query:   27 TMALEQVTPEQIMMPATGGATQLRLLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDARSTN--MFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAVFSEN 228
            T   E+   E +   A    +    L P  +       D    + +   ++ ++ R  DR   C      H    S     FYS    PF +  YV +L   +  S S +I+AL++LDRVR  +  L L  L+VHR++ TAL +A K ++D    N  +  + G+    E+N +E  FL  L +  + S D F     AV + +
Sbjct:   57 TFQCERQALEVVSGSAYSACSSEGQLSPDHQAHVEDCHDESEQIHVDGLIASIV-RHLDRELRCGGAAQIHAPDESDQECAFYSIEAQPFPMEFYVQRLAKHMGCSSSAFIMALIYLDRVRRRNSLLQLSSLSVHRLVLTALVVAAKFVDDSVFENKWYAVVGGLESVQEMNKLERIFLGELDFRLYCSADEFNLTKEAVMASD 259          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A4Q9NS80_9APHY (Cyclin-domain-containing protein n=3 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9NS80_9APHY)

HSP 1 Score: 74.7 bits (182), Expect = 4.740e-12
Identity = 44/149 (29.53%), Postives = 78/149 (52.35%), Query Frame = 0
Query:   72 IVRALSDVLQRTCDRNAACTLQPNPHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEY 220
            + R ++D+++R    N    L P      +S   F+S +    S+  Y+ +++   K  RS  ++ L ++D++ +      L  L  HR + T++C++ K L D  H NS +  + GIP T ELN++E EFLR + WN   + +  +EY
Sbjct:   21 LARLIADMMERLMAHNDQIPLSP------KSLTRFHSRSAPGISVLDYLRRIIKFTKAERSCLLITLHYIDQISVRMPVFVLSSLTCHRFVITSICVSSKCLCDAFHSNSVYAKVGGIPVT-ELNVLEREFLRMIDWNLTCTREVLQEY 162          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A7S1TIJ0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIJ0_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 5.870e-12
Identity = 43/133 (32.33%), Postives = 79/133 (59.40%), Query Frame = 0
Query:   96 PHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVR-LVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAVFSE 227
            PH +  S ++FYS     FSL  YV +L+ + + SRS +++AL++L RV+    ++  ++  NVHR+  TAL LA K L++  + N  +  + G+    E+N +E E LR L ++ +VS D ++ + + + ++
Sbjct:   59 PH-ELDSASLFYSRASQSFSLDWYVERLIRRAECSRSAFVLALIYLLRVQDKGKEKYFVVERNVHRLFLTALVLAIKFLDEPIYDNGFYARVGGLSSLREMNDLEKEMLRVLNFDVFVSEDEYDYFKAMLLTQ 190          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A812V7N1_SYMMI (CYCU3-1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V7N1_SYMMI)

HSP 1 Score: 71.2 bits (173), Expect = 6.210e-12
Identity = 42/122 (34.43%), Postives = 77/122 (63.11%), Query Frame = 0
Query:  106 FYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQR-LCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYDSAVFS 226
            F S      S+  Y+ ++    K S + ++VAL+++DR  L++ R + L  LNVHR+L T++ ++ KV +D+ ++N+ +  + G+  T+ELN +E EFL  + ++ +VS DTFE+Y + + S
Sbjct:   11 FQSSYAPGISILGYLERIYKYAKCSPNCFVVALIYIDR--LIEIRNIVLTSLNVHRILITSVLISTKVFDDDFYKNAYYAKLGGVS-TTELNSLELEFLSLVNFDLFVSTDTFEKYQNELRS 129          
BLAST of Gcaud1419.t1 vs. uniprot
Match: A0A7S1T5I1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T5I1_9RHOD)

HSP 1 Score: 73.6 bits (179), Expect = 6.650e-12
Identity = 61/207 (29.47%), Postives = 96/207 (46.38%), Query Frame = 0
Query:   29 ALEQVTPEQIMMPATGGAT--------------QLRLLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDARSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQRLCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEHEFLRRLQWNCWVSVDTFEEYD 221
            ++  V    + +PA+G AT               L+L + Q+E   S+  ++      VRAL+ +L   C  N       N       T MF+S       L+ YV +LV   + SRSV+IVAL++L R+      L    LN+HR+L T + +A K +ED    N  F    G+    E+N +E   L  L++  +VS + +E Y+
Sbjct:   25 SIRSVDLRGLFVPASGKATWTDLLDENCPRETRHLKLEVIQWE---STKPESEEVSSTVRALTKILSTLCTSNEDRIKLENVR---DVTRMFFSVRKPGIPLNTYVKRLVKHSRCSRSVFIVALIYLQRLEAAWPTLGATELNIHRLLTTCIMIAAKFVEDVHLNNLHFARAGGVSNVVEMNRLEATALALLKFQTFVSSEEYERYE 225          
The following BLAST results are available for this feature:
BLAST of Gcaud1419.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1G6_9FLOR5.200e-8457.72Cyclin-U2-2 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A1X6NWM5_PORUM1.880e-1845.30Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NRH4_PORUM6.960e-1836.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2V3IT02_9FLOR1.840e-1434.19Cyclin-P3-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A5J4YXN5_PORPP5.060e-1336.07Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A7S0T7Z7_9RHOD7.360e-1327.45Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A4Q9NS80_9APHY4.740e-1229.53Cyclin-domain-containing protein n=3 Tax=Dichomitu... [more]
A0A7S1TIJ0_9RHOD5.870e-1232.33Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A812V7N1_SYMMI6.210e-1234.43CYCU3-1 protein (Fragment) n=1 Tax=Symbiodinium mi... [more]
A0A7S1T5I1_9RHOD6.650e-1229.47Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 61..256
e-value: 1.3E-33
score: 118.3
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 101..209
e-value: 1.8E-17
score: 64.1
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 70..227
IPR013763Cyclin-likeCDDcd00043CYCLINcoord: 122..203
e-value: 0.0080483
score: 32.9809
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 118..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_653_length_20221_cov_4.515748contigNODE_653_length_20221_cov_4.515748:10439..11239 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1419.t1Gcaud1419.t1Gracilaria caudata M_176_S67 malemRNANODE_653_length_20221_cov_4.515748 10439..11239 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1419.t1 ID=Gcaud1419.t1|Name=Gcaud1419.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MPPLSSAQAQLLPAYRRRQRRKRDWITMALEQVTPEQIMMPATGGATQLR
LLLPQFEPPSSSAADNYNSLFIVRALSDVLQRTCDRNAACTLQPNPHIDA
RSTNMFYSCTVAPFSLSCYVYQLVTQLKLSRSVYIVALVFLDRVRLVDQR
LCLIHLNVHRVLATALCLADKVLEDECHRNSSFCAIAGIPCTSELNLMEH
EFLRRLQWNCWVSVDTFEEYDSAVFSENADARVVDAQAAVALESAAVSAA
RTLSRMTGGAESSSHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR013763Cyclin-like
IPR036915Cyclin-like_sf