Gcaud2132.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2132.t1
Unique NameGcaud2132.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length589
Homology
BLAST of Gcaud2132.t1 vs. uniprot
Match: A0A2V3IHA7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHA7_9FLOR)

HSP 1 Score: 437 bits (1125), Expect = 2.130e-143
Identity = 287/621 (46.22%), Postives = 378/621 (60.87%), Query Frame = 0
Query:    1 MNTKRPSRASNQKRKPNPPISSSGDDENTTIAIEVDADAATAQDDALADSEKN-FENWSPVDAEDDDVSLEQLLLDEDXXXXXXXXXXXXXXXGFXXXXXELEIEGAFDEDXXXXXXXXXXXXXXXXXX-------LAAQAESEDFD-DEMPIPSVGKRQKRAAAKTRSFPVRTVDDEENADTAEDVLDPITEGFEPVFGVEDVEGDGSGSKLTGMADESSDEEFDEENAEDIRNAANILSESGILGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------DFEGLFNVED-------EEVSDEEKAEDGGIATVEAGEEQQRQEDQEFALTTESSFGKVWELNEDTYVTITEPGQAYAYELDEEDEEDQEMSTVRRGKQGGWSGGLASYPTSADLPEGSKEWIARRSYELLAQSTPKEMFQWTRRHMSPPQAIADLYPKPNHKPTPLGKQVLQLSSPDSSSALN-INKDEENTDPTYAPGAKMKEEKEETESNNGTFDVLAN--------NSPDDMMSER--EEVFESDRTALDRSVEFPSSFKFKIESSGKGFRDHIQKIVEDTLRREVEPLSFSVEKEGKLERIEFNVTVQNSKEITDIFDALYSDERVKRSYG 588
            MNTKR  R SN K +  P   S+  DEN +   E+++     Q+  LA  E    E WSPV A++ DV +E LLL ED                F     +L +E  F+ED   X         XXXXX       LAAQA S DFD DE+PIP V KR+ R+++++ +  +  +D+++N D++EDVLDP+ +GFEPVF V D   D   + LT + DE   EEFDEE+AEDIRNAANILS+SGILG+                                     DFE L + ED       EEV D+E  E   +  ++A        D E+ LTTESS G+VWELNEDTYVTITEPG+AY YELDEEDEEDQEMSTVRRGKQGGWSGGLASYP S+DLP GSKEWIARRSYEL+A+S+  +MF+WT+RH++ P  I  LYP    +P PLGKQ+L+LS+P++S+++      +EN   T   G  M   + E + + G  D +A         + P+D    R  E+ FE DR+A+DRS+ FP  +KFKIE SG+GF + +Q IV++TL R++E L  +VE+ G+ +R+EFN+T++NSKEITD+FDAL +D R+KRSYG
Sbjct:   16 MNTKRRPRTSNGKSESEPSRPSAISDENLSGVQEIESGE---QEVLLAGPENEALEGWSPVAADEGDVPIEALLLGEDEAEETLDDEEILLDGDFDEDSGDLNVEDVFEEDDEAXDDEAEGIDEXXXXXXXXXXXELAAQASSGDFDEDEIPIPGVQKRRVRSSSRSGTVTLDDIDEDDNIDSSEDVLDPLADGFEPVFEVGDSGRDEPSASLTTVKDEQRTEEFDEESAEDIRNAANILSKSGILGIGLGEAETDDISQSQANSVALSDNDSTTVNAELSGDDLDFEKLLSFEDKPETEEKEEVVDKEPDE---VEDIDAD------YDDEYTLTTESSVGRVWELNEDTYVTITEPGEAYPYELDEEDEEDQEMSTVRRGKQGGWSGGLASYPASSDLPVGSKEWIARRSYELIAESSAVDMFRWTKRHLTAPPLIDGLYPDERPEPVPLGKQILKLSTPETSASVTGTGLFQENLSATEEEGT-MAPMRGEAQDDEGLEDYVAEILVEPGNGSGPEDEKKRRGVEDAFEKDRSAMDRSMTFPYVYKFKIEGSGEGFPECVQDIVKNTLGRDIEDLPLAVERSGRYDRVEFNLTLENSKEITDLFDALRTDARIKRSYG 623          
BLAST of Gcaud2132.t1 vs. uniprot
Match: R7QM30_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM30_CHOCR)

HSP 1 Score: 238 bits (608), Expect = 4.730e-67
Identity = 196/509 (38.51%), Postives = 274/509 (53.83%), Query Frame = 0
Query:  100 ELEI--EGAFDEDXXXXXXXXXXXXXXXXXXLAAQAESEDFDDEMPIPSVGKRQKRAAAKTR-SFPVRTVDDEENADT--AEDVLDPITEGFEPVFGVEDVEGDGSGSKLTGMADESSDEEF----DEENAEDIRNAANILSESGILGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFE------GLFNVEDEEVSDEEKAEDGGIATVEAGEEQQRQEDQE-----FALTTESSFGKVWELNEDTYVTITEPGQAYAYELDEEDEEDQEMSTVRRGKQGGWSGGLASYPTSADLPEGSKEWIARRSYELLAQSTPKEMFQWTRRHMSPPQAIADLYPKPNHKPTPLGKQVLQLSSPDSSSALNINKDEENTDPTYAPGAKMKEEKEETESNNGTFDVLANNSPDDMMSEREEVFESDRTALDRSVEFPSSFKFKIESSGKGFRDHIQKIVEDTLRREVEPLSFSVEKEGKLERIEFNVTVQNSKEITDIFDALYSDERVKRSYG 588
            ELEI  E   DEDXXXXXXXXXXXXXXXXX LAAQA++ED++D++PI ++ KR  R +  +R S P+  VD ++N D   A+++L+ I +   P+F     +G  +  +    A +  DEE     DEE+ EDIR+AA+ILS SG+LGL                                 E       L +V+DE+               ++ E     +          LT++SS G++WELN+D YVTITEPGQAYAYELDEE      MST+RRGKQGGWSGGLASY ++ D+PEGS EW+ARR+YEL+A+S   EMFQWTRRH  PP  I  LYP     P  + +  LQ S+PD  +++ +  D  + +     G K     E+ E ++                           ALDR+V FP  +KFK+E SG    D +    E  L R V   +  V+  G+ +R+E  V V +++++T+++D L ++  VK S+G
Sbjct:  138 ELEIVGENVDDEDXXXXXXXXXXXXXXXXXELAAQADAEDYEDDIPIATLSKRGGRISTGSRMSGPLAAVDVDDNDDIXXADEILETIDDDIPPIF-----DGPAALEEEVRPAIDGVDEELFVEVDEESEEDIRSAADILSNSGLLGLGVEGGKRADMSEVTSFAMGGVEGPARPPALAQPEQYDDEVALLDVDDEDXXXXXXXXXXXXXXXQSLESYMDADXXXXXXXXIPLTSKSSSGRIWELNDDNYVTITEPGQAYAYELDEEXXXXXXMSTMRRGKQGGWSGGLASY-SARDMPEGSPEWVARRAYELVAESNQVEMFQWTRRHRGPPPIIDKLYPADPPPPPRIPRTRLQFSTPDIDASI-VGTDSSSVEDEQ--GRKRTPAPEKVEGSH---------------------------ALDRAVNFPCQYKFKVEGSGDDLIDALIADTEKILGRPVPDSAVHVQPAGRYKRVEIMVEVTSARQVTNLYDTLRNNSGVKYSFG 610          
BLAST of Gcaud2132.t1 vs. uniprot
Match: A0A1X6NLQ4_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NLQ4_PORUM)

HSP 1 Score: 89.0 bits (219), Expect = 7.830e-15
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 0
Query:  310 EFALTTESSFGKVWELNEDTYVTITEPGQAYAY---ELDEEDEEDQ--------EMSTVRRGKQGGWSGGLASYPTSAD----LPEGSKEWIARRSYELLAQSTPKEMFQWTRRHMSPPQAIADLYP 421
            EF +T ++SFG+VW LN+D YVTITEPG+ +A+   ++   DEED         E    RR      +   +++P +      +  GSKEW AR +YE    + P EM++W+R+H +PP  + +L+P
Sbjct:  301 EFGVTQDTSFGRVWALNDDNYVTITEPGEGFAFGDADVAATDEEDNGGGSNALHEHDATRRATPAWGASTASAWPAAMGGGVAMDVGSKEWAARAAYERCTSAPPVEMYRWSRKHSTPPAGMEELFP 427          
The following BLAST results are available for this feature:
BLAST of Gcaud2132.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IHA7_9FLOR2.130e-14346.22Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM30_CHOCR4.730e-6738.51Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NLQ4_PORUM7.830e-1537.01Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.260coord: 502..585
e-value: 8.8E-8
score: 34.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..454
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..312
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
IPR007454Uncharacterised protein family UPF0250PFAMPF04359DUF493coord: 508..584
e-value: 3.2E-6
score: 27.6
IPR027471YbeD-like domain superfamilySUPERFAMILY117991YbeD/HP0495-likecoord: 504..584

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:8161..9927 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2132.t1Gcaud2132.t1Gracilaria caudata M_176_S67 malemRNANODE_116_length_48691_cov_4.274671 8161..9927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=589bp
MNTKRPSRASNQKRKPNPPISSSGDDENTTIAIEVDADAATAQDDALADS
EKNFENWSPVDAEDDDVSLEQLLLDEDEEEDETLDDDIILSEGFEEDEEE
LEIEGAFDEDEEEDEDTEEDNGFDEDDELAAQAESEDFDDEMPIPSVGKR
QKRAAAKTRSFPVRTVDDEENADTAEDVLDPITEGFEPVFGVEDVEGDGS
GSKLTGMADESSDEEFDEENAEDIRNAANILSESGILGLGLGEGRTGASS
AARDRSSQDDDDLEGDDEDYDFEGLFNVEDEEVSDEEKAEDGGIATVEAG
EEQQRQEDQEFALTTESSFGKVWELNEDTYVTITEPGQAYAYELDEEDEE
DQEMSTVRRGKQGGWSGGLASYPTSADLPEGSKEWIARRSYELLAQSTPK
EMFQWTRRHMSPPQAIADLYPKPNHKPTPLGKQVLQLSSPDSSSALNINK
DEENTDPTYAPGAKMKEEKEETESNNGTFDVLANNSPDDMMSEREEVFES
DRTALDRSVEFPSSFKFKIESSGKGFRDHIQKIVEDTLRREVEPLSFSVE
KEGKLERIEFNVTVQNSKEITDIFDALYSDERVKRSYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007454UPF0250
IPR027471YbeD-like_sf