Gcaud2132.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2132.t1
Unique Name	Gcaud2132.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	589

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:8161..9927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2132	Gcaud2132	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 8161..9927 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2132.t1.start1	Gcaud2132.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 8161..8163 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2132.t1.CDS1	Gcaud2132.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 8161..9927 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2132.t1.exon1	Gcaud2132.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 8161..9927 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2132.t1.stop1	Gcaud2132.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 9925..9927 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2132.t1	Gcaud2132.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 8161..9927 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+

mRNA sequence

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=589bp
MNTKRPSRASNQKRKPNPPISSSGDDENTTIAIEVDADAATAQDDALADS
EKNFENWSPVDAEDDDVSLEQLLLDEDEEEDETLDDDIILSEGFEEDEEE
LEIEGAFDEDEEEDEDTEEDNGFDEDDELAAQAESEDFDDEMPIPSVGKR
QKRAAAKTRSFPVRTVDDEENADTAEDVLDPITEGFEPVFGVEDVEGDGS
GSKLTGMADESSDEEFDEENAEDIRNAANILSESGILGLGLGEGRTGASS
AARDRSSQDDDDLEGDDEDYDFEGLFNVEDEEVSDEEKAEDGGIATVEAG
EEQQRQEDQEFALTTESSFGKVWELNEDTYVTITEPGQAYAYELDEEDEE
DQEMSTVRRGKQGGWSGGLASYPTSADLPEGSKEWIARRSYELLAQSTPK
EMFQWTRRHMSPPQAIADLYPKPNHKPTPLGKQVLQLSSPDSSSALNINK
DEENTDPTYAPGAKMKEEKEETESNNGTFDVLANNSPDDMMSEREEVFES
DRTALDRSVEFPSSFKFKIESSGKGFRDHIQKIVEDTLRREVEPLSFSVE
KEGKLERIEFNVTVQNSKEITDIFDALYSDERVKRSYG*

spliced messenger RNA

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACAAAACGTCCTTCAAGAGCTTCAAACCAGAAACGAAAACCCAA
CCCACCAATATCGTCATCGGGTGATGACGAAAATACCACGATTGCAATTG
AAGTCGACGCAGACGCGGCAACAGCACAGGATGATGCCCTGGCTGACTCG
GAGAAAAACTTCGAGAACTGGTCCCCTGTAGATGCGGAAGACGATGATGT
TTCTCTAGAACAGCTACTTCTTGATGAGGATGAGGAAGAAGATGAAACTC
TTGATGATGATATTATACTGAGCGAAGGCTTCGAAGAGGATGAGGAGGAA
CTTGAAATTGAAGGCGCGTTTGATGAAGATGAGGAGGAGGACGAAGACAC
AGAGGAAGATAATGGTTTCGATGAAGACGATGAACTCGCGGCGCAAGCCG
AAAGTGAAGATTTTGACGACGAGATGCCGATCCCTTCGGTAGGGAAAAGA
CAAAAGCGGGCTGCAGCAAAGACAAGAAGCTTTCCAGTGAGAACAGTAGA
TGATGAGGAAAATGCGGACACTGCAGAAGATGTCCTAGATCCAATCACGG
AGGGATTCGAACCCGTTTTTGGGGTCGAAGATGTCGAAGGCGACGGTTCT
GGTTCAAAATTGACAGGAATGGCCGATGAGAGTTCAGACGAAGAGTTCGA
TGAAGAAAACGCCGAAGATATTAGAAACGCAGCAAATATCTTGTCCGAAA
GCGGAATTCTCGGGCTTGGTTTGGGAGAGGGGAGGACGGGCGCCTCATCT
GCTGCTCGGGATAGGTCGTCTCAAGATGACGATGATTTAGAGGGGGATGA
CGAAGACTATGATTTTGAAGGGTTGTTTAACGTCGAAGATGAAGAAGTTT
CTGACGAAGAGAAAGCCGAAGATGGTGGCATTGCAACAGTGGAAGCTGGA
GAAGAACAGCAGCGACAAGAAGACCAAGAATTCGCATTGACAACTGAATC
TAGTTTTGGGAAAGTGTGGGAGCTAAATGAGGACACTTATGTTACCATCA
CGGAGCCCGGACAGGCATATGCTTATGAGTTAGATGAGGAAGACGAAGAA
GACCAAGAAATGTCAACTGTGAGGCGAGGAAAGCAAGGGGGATGGAGCGG
TGGTCTAGCATCATATCCCACTTCTGCGGATTTGCCTGAGGGATCAAAGG
AATGGATTGCACGTCGTTCATACGAGCTTCTCGCTCAATCGACACCCAAG
GAAATGTTTCAGTGGACCAGGCGACATATGTCTCCTCCACAAGCAATAGC
CGATCTATATCCAAAACCTAACCATAAACCGACCCCGTTAGGGAAGCAAG
TTCTACAGCTTTCATCCCCAGACTCTTCGTCTGCACTGAATATAAATAAA
GACGAGGAGAACACGGACCCTACATATGCACCTGGAGCGAAAATGAAGGA
AGAGAAGGAGGAAACGGAATCAAACAATGGTACGTTCGATGTCTTAGCGA
ACAATTCACCCGATGATATGATGTCGGAGAGGGAAGAAGTATTCGAAAGC
GATAGAACGGCTTTGGATCGATCAGTAGAATTTCCAAGTTCGTTCAAGTT
TAAAATCGAAAGCTCAGGCAAAGGATTTCGGGACCATATACAAAAGATTG
TGGAAGACACTTTGAGAAGGGAAGTAGAACCACTATCGTTCTCAGTGGAG
AAAGAAGGAAAACTGGAAAGAATTGAATTCAATGTGACTGTTCAAAACTC
GAAGGAAATCACCGACATATTCGACGCTCTTTATAGCGATGAACGGGTGA
AACGTAGCTATGGATAA

protein sequence of Gcaud2132.t1

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=589bp
MNTKRPSRASNQKRKPNPPISSSGDDENTTIAIEVDADAATAQDDALADS
EKNFENWSPVDAEDDDVSLEQLLLDEDEEEDETLDDDIILSEGFEEDEEE
LEIEGAFDEDEEEDEDTEEDNGFDEDDELAAQAESEDFDDEMPIPSVGKR
QKRAAAKTRSFPVRTVDDEENADTAEDVLDPITEGFEPVFGVEDVEGDGS
GSKLTGMADESSDEEFDEENAEDIRNAANILSESGILGLGLGEGRTGASS
AARDRSSQDDDDLEGDDEDYDFEGLFNVEDEEVSDEEKAEDGGIATVEAG
EEQQRQEDQEFALTTESSFGKVWELNEDTYVTITEPGQAYAYELDEEDEE
DQEMSTVRRGKQGGWSGGLASYPTSADLPEGSKEWIARRSYELLAQSTPK
EMFQWTRRHMSPPQAIADLYPKPNHKPTPLGKQVLQLSSPDSSSALNINK
DEENTDPTYAPGAKMKEEKEETESNNGTFDVLANNSPDDMMSEREEVFES
DRTALDRSVEFPSSFKFKIESSGKGFRDHIQKIVEDTLRREVEPLSFSVE
KEGKLERIEFNVTVQNSKEITDIFDALYSDERVKRSYG*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1767bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+ (Gracilaria caudata M_176_S67 male)
ATGAACACAAAACGTCCTTCAAGAGCTTCAAACCAGAAACGAAAACCCAA
CCCACCAATATCGTCATCGGGTGATGACGAAAATACCACGATTGCAATTG
AAGTCGACGCAGACGCGGCAACAGCACAGGATGATGCCCTGGCTGACTCG
GAGAAAAACTTCGAGAACTGGTCCCCTGTAGATGCGGAAGACGATGATGT
TTCTCTAGAACAGCTACTTCTTGATGAGGATGAGGAAGAAGATGAAACTC
TTGATGATGATATTATACTGAGCGAAGGCTTCGAAGAGGATGAGGAGGAA
CTTGAAATTGAAGGCGCGTTTGATGAAGATGAGGAGGAGGACGAAGACAC
AGAGGAAGATAATGGTTTCGATGAAGACGATGAACTCGCGGCGCAAGCCG
AAAGTGAAGATTTTGACGACGAGATGCCGATCCCTTCGGTAGGGAAAAGA
CAAAAGCGGGCTGCAGCAAAGACAAGAAGCTTTCCAGTGAGAACAGTAGA
TGATGAGGAAAATGCGGACACTGCAGAAGATGTCCTAGATCCAATCACGG
AGGGATTCGAACCCGTTTTTGGGGTCGAAGATGTCGAAGGCGACGGTTCT
GGTTCAAAATTGACAGGAATGGCCGATGAGAGTTCAGACGAAGAGTTCGA
TGAAGAAAACGCCGAAGATATTAGAAACGCAGCAAATATCTTGTCCGAAA
GCGGAATTCTCGGGCTTGGTTTGGGAGAGGGGAGGACGGGCGCCTCATCT
GCTGCTCGGGATAGGTCGTCTCAAGATGACGATGATTTAGAGGGGGATGA
CGAAGACTATGATTTTGAAGGGTTGTTTAACGTCGAAGATGAAGAAGTTT
CTGACGAAGAGAAAGCCGAAGATGGTGGCATTGCAACAGTGGAAGCTGGA
GAAGAACAGCAGCGACAAGAAGACCAAGAATTCGCATTGACAACTGAATC
TAGTTTTGGGAAAGTGTGGGAGCTAAATGAGGACACTTATGTTACCATCA
CGGAGCCCGGACAGGCATATGCTTATGAGTTAGATGAGGAAGACGAAGAA
GACCAAGAAATGTCAACTGTGAGGCGAGGAAAGCAAGGGGGATGGAGCGG
TGGTCTAGCATCATATCCCACTTCTGCGGATTTGCCTGAGGGATCAAAGG
AATGGATTGCACGTCGTTCATACGAGCTTCTCGCTCAATCGACACCCAAG
GAAATGTTTCAGTGGACCAGGCGACATATGTCTCCTCCACAAGCAATAGC
CGATCTATATCCAAAACCTAACCATAAACCGACCCCGTTAGGGAAGCAAG
TTCTACAGCTTTCATCCCCAGACTCTTCGTCTGCACTGAATATAAATAAA
GACGAGGAGAACACGGACCCTACATATGCACCTGGAGCGAAAATGAAGGA
AGAGAAGGAGGAAACGGAATCAAACAATGGTACGTTCGATGTCTTAGCGA
ACAATTCACCCGATGATATGATGTCGGAGAGGGAAGAAGTATTCGAAAGC
GATAGAACGGCTTTGGATCGATCAGTAGAATTTCCAAGTTCGTTCAAGTT
TAAAATCGAAAGCTCAGGCAAAGGATTTCGGGACCATATACAAAAGATTG
TGGAAGACACTTTGAGAAGGGAAGTAGAACCACTATCGTTCTCAGTGGAG
AAAGAAGGAAAACTGGAAAGAATTGAATTCAATGTGACTGTTCAAAACTC
GAAGGAAATCACCGACATATTCGACGCTCTTTATAGCGATGAACGGGTGA
AACGTAGCTATGGATAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+

>Gcaud2132.t1 ID=Gcaud2132.t1|Name=Gcaud2132.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1767bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:8161..9927+ (Gracilaria caudata M_176_S67 male)
ATGAACACAAAACGTCCTTCAAGAGCTTCAAACCAGAAACGAAAACCCAA
CCCACCAATATCGTCATCGGGTGATGACGAAAATACCACGATTGCAATTG
AAGTCGACGCAGACGCGGCAACAGCACAGGATGATGCCCTGGCTGACTCG
GAGAAAAACTTCGAGAACTGGTCCCCTGTAGATGCGGAAGACGATGATGT
TTCTCTAGAACAGCTACTTCTTGATGAGGATGAGGAAGAAGATGAAACTC
TTGATGATGATATTATACTGAGCGAAGGCTTCGAAGAGGATGAGGAGGAA
CTTGAAATTGAAGGCGCGTTTGATGAAGATGAGGAGGAGGACGAAGACAC
AGAGGAAGATAATGGTTTCGATGAAGACGATGAACTCGCGGCGCAAGCCG
AAAGTGAAGATTTTGACGACGAGATGCCGATCCCTTCGGTAGGGAAAAGA
CAAAAGCGGGCTGCAGCAAAGACAAGAAGCTTTCCAGTGAGAACAGTAGA
TGATGAGGAAAATGCGGACACTGCAGAAGATGTCCTAGATCCAATCACGG
AGGGATTCGAACCCGTTTTTGGGGTCGAAGATGTCGAAGGCGACGGTTCT
GGTTCAAAATTGACAGGAATGGCCGATGAGAGTTCAGACGAAGAGTTCGA
TGAAGAAAACGCCGAAGATATTAGAAACGCAGCAAATATCTTGTCCGAAA
GCGGAATTCTCGGGCTTGGTTTGGGAGAGGGGAGGACGGGCGCCTCATCT
GCTGCTCGGGATAGGTCGTCTCAAGATGACGATGATTTAGAGGGGGATGA
CGAAGACTATGATTTTGAAGGGTTGTTTAACGTCGAAGATGAAGAAGTTT
CTGACGAAGAGAAAGCCGAAGATGGTGGCATTGCAACAGTGGAAGCTGGA
GAAGAACAGCAGCGACAAGAAGACCAAGAATTCGCATTGACAACTGAATC
TAGTTTTGGGAAAGTGTGGGAGCTAAATGAGGACACTTATGTTACCATCA
CGGAGCCCGGACAGGCATATGCTTATGAGTTAGATGAGGAAGACGAAGAA
GACCAAGAAATGTCAACTGTGAGGCGAGGAAAGCAAGGGGGATGGAGCGG
TGGTCTAGCATCATATCCCACTTCTGCGGATTTGCCTGAGGGATCAAAGG
AATGGATTGCACGTCGTTCATACGAGCTTCTCGCTCAATCGACACCCAAG
GAAATGTTTCAGTGGACCAGGCGACATATGTCTCCTCCACAAGCAATAGC
CGATCTATATCCAAAACCTAACCATAAACCGACCCCGTTAGGGAAGCAAG
TTCTACAGCTTTCATCCCCAGACTCTTCGTCTGCACTGAATATAAATAAA
GACGAGGAGAACACGGACCCTACATATGCACCTGGAGCGAAAATGAAGGA
AGAGAAGGAGGAAACGGAATCAAACAATGGTACGTTCGATGTCTTAGCGA
ACAATTCACCCGATGATATGATGTCGGAGAGGGAAGAAGTATTCGAAAGC
GATAGAACGGCTTTGGATCGATCAGTAGAATTTCCAAGTTCGTTCAAGTT
TAAAATCGAAAGCTCAGGCAAAGGATTTCGGGACCATATACAAAAGATTG
TGGAAGACACTTTGAGAAGGGAAGTAGAACCACTATCGTTCTCAGTGGAG
AAAGAAGGAAAACTGGAAAGAATTGAATTCAATGTGACTGTTCAAAACTC
GAAGGAAATCACCGACATATTCGACGCTCTTTATAGCGATGAACGGGTGA
AACGTAGCTATGGATAA