Gcaud2131.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2131.t1
Unique Name	Gcaud2131.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:6037..7566 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010243074.1
PFAMs	tRNA-synt_2d
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01889
KEGG Reaction	R03660
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
GOs	GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494
Evalue	6.17e-191
EggNOG OGs	COG0016@1\|root,KOG2784@2759\|Eukaryota,37R79@33090\|Viridiplantae,3GFPA@35493\|Streptophyta
EC	6.1.1.20
Description	Phenylalanine--tRNA ligase alpha subunit
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2131	Gcaud2131	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 6037..7566 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2131.t1.stop1	Gcaud2131.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 6037..6039 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2131.t1.CDS1	Gcaud2131.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 6037..7566 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2131.t1.exon1	Gcaud2131.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 6037..7566 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2131.t1.start1	Gcaud2131.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 7564..7566 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2131.t1	Gcaud2131.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 6037..7566 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:6037..7566-
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:6037..7566-

mRNA sequence

>Gcaud2131.t1 ID=Gcaud2131.t1|Name=Gcaud2131.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MSTDVTVEEALLRSVEELNSASDFLESLPLATKLGTDHQTLVDGILKSLN
AKLAIKLEPVTHNRWEISSEGLSYADTTSPEVAFFNAVREVLEVGGVPGL
DQLEKKVSKQVMVRGKQQALRRKWVSIDKETKAFKLNDDVNVTDEVANAL
RKLRDQDGSPNGVSSVMLKDLKSRKLAALKPYKTFKIFPGERLVDARKNQ
ATELTKEMLESGDWKSVAFKPYNFDAEGKQTNGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANVM
DRNYLERVRKVHEEGGFGSRGYRYEWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
TNPICRLTF*

spliced messenger RNA

>Gcaud2131.t1 ID=Gcaud2131.t1|Name=Gcaud2131.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:6037..7566- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGGACGTGACGGTCGAGGAAGCTTTGCTTCGATCAGTAGAAGA
GCTCAACTCAGCTTCTGATTTCCTTGAATCCCTCCCATTGGCGACAAAGC
TAGGAACTGATCACCAAACTCTGGTAGATGGTATTCTCAAGTCATTGAAT
GCGAAACTGGCGATCAAGTTAGAACCGGTGACCCACAATCGATGGGAAAT
TTCTTCCGAGGGCTTATCTTATGCAGATACCACATCACCAGAAGTTGCTT
TCTTCAATGCAGTTAGAGAGGTACTAGAAGTCGGCGGGGTGCCTGGTCTA
GATCAATTGGAAAAGAAGGTTTCAAAACAGGTAATGGTCAGAGGGAAGCA
ACAGGCTTTACGTCGTAAATGGGTTTCTATTGACAAAGAAACGAAGGCTT
TTAAGCTGAATGATGACGTTAATGTAACCGACGAAGTAGCGAACGCTCTT
CGGAAGCTTCGCGATCAAGATGGCTCTCCGAACGGGGTTTCTAGTGTTAT
GCTCAAAGATCTCAAGTCCAGGAAGCTTGCGGCGTTGAAACCTTACAAGA
CCTTCAAGATCTTCCCTGGCGAAAGGCTGGTAGATGCCCGGAAAAATCAG
GCAACCGAGCTAACGAAGGAAATGCTCGAATCTGGTGATTGGAAATCTGT
TGCTTTCAAGCCTTATAATTTCGACGCTGAAGGAAAGCAAACGAATGGCG
GTTATTTACATACTTTGTTGAAGGTTCGTGAGCAGTTCCGACTCATTTTC
CTAGAAATGGGCTTTGAAGAGATGCCAACAAACAATTATGTAGAGTCTTC
GTTCTGGAACTTTGACGCATTGTTCCAGCCGCAGCAGCACCCAGCACGAG
ATGAACATGATACCTTTTTCCTATCCGATCCTGAATTTGCAAATGTGATG
GATAGGAATTATCTTGAGAGAGTGCGCAAGGTGCATGAAGAAGGCGGTTT
TGGATCCAGAGGTTACCGATACGAGTGGTCGGAACAGGAGGCACGAAAGA
ATATCCTCCGAACTCACACCACTGCCGTTTCGAGTCGAATGCTGTACCTT
CTCGCCCAACAGAAGGAGTTCAAGCCGAAGAAGTACTTTTCGATCGACAG
GGTGTTCCGAAACGAAACTCTTGACGCCACGCATTTAGCGGAATTCCATC
AGATCGAAGGTCTAGTCGCAGACCGAAACCTTTCCTTAGGTCACTTAAAA
GGCATCATTCATGAGTTTTTCAAGAAGATGGGTATGTCAAAACTACGTTT
CAAGCCCACCCATAACCCCTACACGACTCCATCTCTGGAAATTCACTCAT
ATCATGAAGGACTTAAGAAGTGGGTTGAGGTCGGAAACTCTGGAGTGTTT
CGACCAGAAATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCATGGGGTTTGAGTCTTGAACGACCGACAATGATCCGTTACGGGATCC
GAAACATTCGTGACCTCTTCGGTCATAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGGCTAACTTTTTGA

protein sequence of Gcaud2131.t1

>Gcaud2131.t1 ID=Gcaud2131.t1|Name=Gcaud2131.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MSTDVTVEEALLRSVEELNSASDFLESLPLATKLGTDHQTLVDGILKSLN
AKLAIKLEPVTHNRWEISSEGLSYADTTSPEVAFFNAVREVLEVGGVPGL
DQLEKKVSKQVMVRGKQQALRRKWVSIDKETKAFKLNDDVNVTDEVANAL
RKLRDQDGSPNGVSSVMLKDLKSRKLAALKPYKTFKIFPGERLVDARKNQ
ATELTKEMLESGDWKSVAFKPYNFDAEGKQTNGGYLHTLLKVREQFRLIF
LEMGFEEMPTNNYVESSFWNFDALFQPQQHPARDEHDTFFLSDPEFANVM
DRNYLERVRKVHEEGGFGSRGYRYEWSEQEARKNILRTHTTAVSSRMLYL
LAQQKEFKPKKYFSIDRVFRNETLDATHLAEFHQIEGLVADRNLSLGHLK
GIIHEFFKKMGMSKLRFKPTHNPYTTPSLEIHSYHEGLKKWVEVGNSGVF
RPEMIRPMGIPEDVTVIAWGLSLERPTMIRYGIRNIRDLFGHKVDLKAIQ
TNPICRLTF*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:6037..7566-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2131.t1 ID=Gcaud2131.t1|Name=Gcaud2131.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:6037..7566- (Gracilaria caudata M_176_S67 male)
ATGTCTACGGACGTGACGGTCGAGGAAGCTTTGCTTCGATCAGTAGAAGA
GCTCAACTCAGCTTCTGATTTCCTTGAATCCCTCCCATTGGCGACAAAGC
TAGGAACTGATCACCAAACTCTGGTAGATGGTATTCTCAAGTCATTGAAT
GCGAAACTGGCGATCAAGTTAGAACCGGTGACCCACAATCGATGGGAAAT
TTCTTCCGAGGGCTTATCTTATGCAGATACCACATCACCAGAAGTTGCTT
TCTTCAATGCAGTTAGAGAGGTACTAGAAGTCGGCGGGGTGCCTGGTCTA
GATCAATTGGAAAAGAAGGTTTCAAAACAGGTAATGGTCAGAGGGAAGCA
ACAGGCTTTACGTCGTAAATGGGTTTCTATTGACAAAGAAACGAAGGCTT
TTAAGCTGAATGATGACGTTAATGTAACCGACGAAGTAGCGAACGCTCTT
CGGAAGCTTCGCGATCAAGATGGCTCTCCGAACGGGGTTTCTAGTGTTAT
GCTCAAAGATCTCAAGTCCAGGAAGCTTGCGGCGTTGAAACCTTACAAGA
CCTTCAAGATCTTCCCTGGCGAAAGGCTGGTAGATGCCCGGAAAAATCAG
GCAACCGAGCTAACGAAGGAAATGCTCGAATCTGGTGATTGGAAATCTGT
TGCTTTCAAGCCTTATAATTTCGACGCTGAAGGAAAGCAAACGAATGGCG
GTTATTTACATACTTTGTTGAAGGTTCGTGAGCAGTTCCGACTCATTTTC
CTAGAAATGGGCTTTGAAGAGATGCCAACAAACAATTATGTAGAGTCTTC
GTTCTGGAACTTTGACGCATTGTTCCAGCCGCAGCAGCACCCAGCACGAG
ATGAACATGATACCTTTTTCCTATCCGATCCTGAATTTGCAAATGTGATG
GATAGGAATTATCTTGAGAGAGTGCGCAAGGTGCATGAAGAAGGCGGTTT
TGGATCCAGAGGTTACCGATACGAGTGGTCGGAACAGGAGGCACGAAAGA
ATATCCTCCGAACTCACACCACTGCCGTTTCGAGTCGAATGCTGTACCTT
CTCGCCCAACAGAAGGAGTTCAAGCCGAAGAAGTACTTTTCGATCGACAG
GGTGTTCCGAAACGAAACTCTTGACGCCACGCATTTAGCGGAATTCCATC
AGATCGAAGGTCTAGTCGCAGACCGAAACCTTTCCTTAGGTCACTTAAAA
GGCATCATTCATGAGTTTTTCAAGAAGATGGGTATGTCAAAACTACGTTT
CAAGCCCACCCATAACCCCTACACGACTCCATCTCTGGAAATTCACTCAT
ATCATGAAGGACTTAAGAAGTGGGTTGAGGTCGGAAACTCTGGAGTGTTT
CGACCAGAAATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCATGGGGTTTGAGTCTTGAACGACCGACAATGATCCGTTACGGGATCC
GAAACATTCGTGACCTCTTCGGTCATAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGGCTAACTTTTTGA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:6037..7566-

>Gcaud2131.t1 ID=Gcaud2131.t1|Name=Gcaud2131.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:6037..7566- (Gracilaria caudata M_176_S67 male)
ATGTCTACGGACGTGACGGTCGAGGAAGCTTTGCTTCGATCAGTAGAAGA
GCTCAACTCAGCTTCTGATTTCCTTGAATCCCTCCCATTGGCGACAAAGC
TAGGAACTGATCACCAAACTCTGGTAGATGGTATTCTCAAGTCATTGAAT
GCGAAACTGGCGATCAAGTTAGAACCGGTGACCCACAATCGATGGGAAAT
TTCTTCCGAGGGCTTATCTTATGCAGATACCACATCACCAGAAGTTGCTT
TCTTCAATGCAGTTAGAGAGGTACTAGAAGTCGGCGGGGTGCCTGGTCTA
GATCAATTGGAAAAGAAGGTTTCAAAACAGGTAATGGTCAGAGGGAAGCA
ACAGGCTTTACGTCGTAAATGGGTTTCTATTGACAAAGAAACGAAGGCTT
TTAAGCTGAATGATGACGTTAATGTAACCGACGAAGTAGCGAACGCTCTT
CGGAAGCTTCGCGATCAAGATGGCTCTCCGAACGGGGTTTCTAGTGTTAT
GCTCAAAGATCTCAAGTCCAGGAAGCTTGCGGCGTTGAAACCTTACAAGA
CCTTCAAGATCTTCCCTGGCGAAAGGCTGGTAGATGCCCGGAAAAATCAG
GCAACCGAGCTAACGAAGGAAATGCTCGAATCTGGTGATTGGAAATCTGT
TGCTTTCAAGCCTTATAATTTCGACGCTGAAGGAAAGCAAACGAATGGCG
GTTATTTACATACTTTGTTGAAGGTTCGTGAGCAGTTCCGACTCATTTTC
CTAGAAATGGGCTTTGAAGAGATGCCAACAAACAATTATGTAGAGTCTTC
GTTCTGGAACTTTGACGCATTGTTCCAGCCGCAGCAGCACCCAGCACGAG
ATGAACATGATACCTTTTTCCTATCCGATCCTGAATTTGCAAATGTGATG
GATAGGAATTATCTTGAGAGAGTGCGCAAGGTGCATGAAGAAGGCGGTTT
TGGATCCAGAGGTTACCGATACGAGTGGTCGGAACAGGAGGCACGAAAGA
ATATCCTCCGAACTCACACCACTGCCGTTTCGAGTCGAATGCTGTACCTT
CTCGCCCAACAGAAGGAGTTCAAGCCGAAGAAGTACTTTTCGATCGACAG
GGTGTTCCGAAACGAAACTCTTGACGCCACGCATTTAGCGGAATTCCATC
AGATCGAAGGTCTAGTCGCAGACCGAAACCTTTCCTTAGGTCACTTAAAA
GGCATCATTCATGAGTTTTTCAAGAAGATGGGTATGTCAAAACTACGTTT
CAAGCCCACCCATAACCCCTACACGACTCCATCTCTGGAAATTCACTCAT
ATCATGAAGGACTTAAGAAGTGGGTTGAGGTCGGAAACTCTGGAGTGTTT
CGACCAGAAATGATCAGGCCGATGGGGATTCCAGAAGATGTAACGGTGAT
TGCATGGGGTTTGAGTCTTGAACGACCGACAATGATCCGTTACGGGATCC
GAAACATTCGTGACCTCTTCGGTCATAAGGTAGATTTAAAGGCAATCCAG
ACTAATCCTATATGCCGGCTAACTTTTTGA