Gcaud2147.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2147.t1
Unique Name	Gcaud2147.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	332

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:47377..48372 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	8496.XP_006262676.1
Preferred name	C9orf114
PFAMs	Methyltrn_RNA_3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09142
GOs	GO:0000775,GO:0000776,GO:0000922,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015630,GO:0016070,GO:0016441,GO:0016458,GO:0019222,GO:0031047,GO:0031050,GO:0031616,GO:0032991,GO:0034641,GO:0035194,GO:0035195,GO:0035196,GO:0035198,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043331,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051179,GO:0051235,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051716,GO:0060255,GO:0061842,GO:0061980,GO:0065007,GO:0065008,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0072686,GO:0090304,GO:0097159,GO:0098687,GO:1901360,GO:1901363,GO:1901698,GO:1901699
Evalue	3.28e-78
EggNOG OGs	COG2106@1\|root,KOG3925@2759\|Eukaryota,38ENH@33154\|Opisthokonta,3BBNZ@33208\|Metazoa,3CZKD@33213\|Bilateria,483SR@7711\|Chordata,4911S@7742\|Vertebrata
Description	maintenance of centrosome location
COG category	E
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2147	Gcaud2147	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 47377..48372 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2147.t1.stop1	Gcaud2147.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 47377..47379 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2147.t1.CDS1	Gcaud2147.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 47377..48372 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2147.t1.exon1	Gcaud2147.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 47377..48372 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2147.t1.start1	Gcaud2147.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 48370..48372 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2147.t1	Gcaud2147.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 47377..48372 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:47377..48372-
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:47377..48372-

mRNA sequence

>Gcaud2147.t1 ID=Gcaud2147.t1|Name=Gcaud2147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=332bp
MSRPQRTVSIALPSSILLNAQSPELRIYLAGQVARAAAIFRVHEIIIFDE
HPSEAPRRSHGAPDDPSALFARVLRYLETPQYLRKHLFPVCAELRLVGLL
NPLALPSHVARGDCVPFREGIAISRSSHRGPATSTPPTRYIDVGLPRLVE
VDRAVAPRTRVTVDMKPSGDDHHNVPGKYLFGRLVSRDSPRAEHMYWGYQ
VRTAKCLSDVFSNSVVCEKYDLVIGTSERGTPIDAFDQNAAFHPCNNLLV
VFGGVQGLEHSVIGDKRLEQLNLCSDPSKSPQSAHPTYEVADLFDFYVNT
CPLQGSRTIRTEEALLISLAALQPIINKNYT*

spliced messenger RNA

>Gcaud2147.t1 ID=Gcaud2147.t1|Name=Gcaud2147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:47377..48372- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCGGCCACAGCGCACGGTCTCCATCGCGCTGCCGTCCTCCATCCT
GCTTAACGCGCAGTCGCCAGAGCTCCGCATCTACTTGGCCGGGCAGGTCG
CGCGCGCCGCCGCCATCTTCCGCGTGCACGAGATAATCATCTTTGACGAG
CATCCCTCAGAGGCCCCTCGCCGGTCGCACGGCGCGCCTGACGACCCCTC
TGCGCTCTTCGCGCGCGTGCTGCGCTATCTTGAAACGCCGCAGTACCTGC
GCAAGCATCTTTTCCCCGTGTGCGCTGAGCTCAGACTCGTAGGCCTGCTC
AATCCGCTGGCACTTCCCAGTCATGTAGCTCGCGGCGATTGCGTGCCGTT
TCGCGAGGGAATCGCCATCTCCAGATCCTCGCACAGGGGCCCTGCTACTA
GCACGCCGCCCACGAGGTACATCGATGTCGGTCTACCGCGACTGGTCGAG
GTTGATCGCGCCGTCGCCCCGCGCACCCGTGTCACCGTTGACATGAAACC
ATCCGGCGATGACCATCACAACGTGCCCGGCAAGTACCTTTTCGGGCGCT
TGGTGTCTCGCGACAGCCCCCGAGCGGAGCACATGTACTGGGGCTATCAG
GTCCGCACAGCCAAGTGCTTATCCGATGTCTTTTCCAACAGCGTCGTCTG
CGAGAAGTACGACCTTGTCATCGGTACCTCGGAGCGCGGTACCCCCATTG
ACGCTTTCGATCAAAACGCCGCCTTCCACCCTTGTAACAACCTTCTTGTT
GTGTTTGGTGGAGTCCAAGGCCTAGAGCACAGCGTAATCGGTGACAAGCG
CCTTGAGCAGCTCAATTTGTGTTCTGATCCCAGCAAATCACCGCAGAGTG
CCCACCCTACATACGAGGTGGCCGATCTGTTTGACTTCTACGTTAACACC
TGCCCGCTTCAAGGCTCACGTACTATTCGCACTGAAGAAGCATTGCTCAT
CTCGCTAGCTGCGCTTCAACCAATCATCAACAAAAACTACACTTAA

protein sequence of Gcaud2147.t1

>Gcaud2147.t1 ID=Gcaud2147.t1|Name=Gcaud2147.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=332bp
MSRPQRTVSIALPSSILLNAQSPELRIYLAGQVARAAAIFRVHEIIIFDE
HPSEAPRRSHGAPDDPSALFARVLRYLETPQYLRKHLFPVCAELRLVGLL
NPLALPSHVARGDCVPFREGIAISRSSHRGPATSTPPTRYIDVGLPRLVE
VDRAVAPRTRVTVDMKPSGDDHHNVPGKYLFGRLVSRDSPRAEHMYWGYQ
VRTAKCLSDVFSNSVVCEKYDLVIGTSERGTPIDAFDQNAAFHPCNNLLV
VFGGVQGLEHSVIGDKRLEQLNLCSDPSKSPQSAHPTYEVADLFDFYVNT
CPLQGSRTIRTEEALLISLAALQPIINKNYT*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:47377..48372-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2147.t1 ID=Gcaud2147.t1|Name=Gcaud2147.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=996bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:47377..48372- (Gracilaria caudata M_176_S67 male)
ATGTCCCGGCCACAGCGCACGGTCTCCATCGCGCTGCCGTCCTCCATCCT
GCTTAACGCGCAGTCGCCAGAGCTCCGCATCTACTTGGCCGGGCAGGTCG
CGCGCGCCGCCGCCATCTTCCGCGTGCACGAGATAATCATCTTTGACGAG
CATCCCTCAGAGGCCCCTCGCCGGTCGCACGGCGCGCCTGACGACCCCTC
TGCGCTCTTCGCGCGCGTGCTGCGCTATCTTGAAACGCCGCAGTACCTGC
GCAAGCATCTTTTCCCCGTGTGCGCTGAGCTCAGACTCGTAGGCCTGCTC
AATCCGCTGGCACTTCCCAGTCATGTAGCTCGCGGCGATTGCGTGCCGTT
TCGCGAGGGAATCGCCATCTCCAGATCCTCGCACAGGGGCCCTGCTACTA
GCACGCCGCCCACGAGGTACATCGATGTCGGTCTACCGCGACTGGTCGAG
GTTGATCGCGCCGTCGCCCCGCGCACCCGTGTCACCGTTGACATGAAACC
ATCCGGCGATGACCATCACAACGTGCCCGGCAAGTACCTTTTCGGGCGCT
TGGTGTCTCGCGACAGCCCCCGAGCGGAGCACATGTACTGGGGCTATCAG
GTCCGCACAGCCAAGTGCTTATCCGATGTCTTTTCCAACAGCGTCGTCTG
CGAGAAGTACGACCTTGTCATCGGTACCTCGGAGCGCGGTACCCCCATTG
ACGCTTTCGATCAAAACGCCGCCTTCCACCCTTGTAACAACCTTCTTGTT
GTGTTTGGTGGAGTCCAAGGCCTAGAGCACAGCGTAATCGGTGACAAGCG
CCTTGAGCAGCTCAATTTGTGTTCTGATCCCAGCAAATCACCGCAGAGTG
CCCACCCTACATACGAGGTGGCCGATCTGTTTGACTTCTACGTTAACACC
TGCCCGCTTCAAGGCTCACGTACTATTCGCACTGAAGAAGCATTGCTCAT
CTCGCTAGCTGCGCTTCAACCAATCATCAACAAAAACTACACTTAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:47377..48372-

>Gcaud2147.t1 ID=Gcaud2147.t1|Name=Gcaud2147.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=996bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:47377..48372- (Gracilaria caudata M_176_S67 male)
ATGTCCCGGCCACAGCGCACGGTCTCCATCGCGCTGCCGTCCTCCATCCT
GCTTAACGCGCAGTCGCCAGAGCTCCGCATCTACTTGGCCGGGCAGGTCG
CGCGCGCCGCCGCCATCTTCCGCGTGCACGAGATAATCATCTTTGACGAG
CATCCCTCAGAGGCCCCTCGCCGGTCGCACGGCGCGCCTGACGACCCCTC
TGCGCTCTTCGCGCGCGTGCTGCGCTATCTTGAAACGCCGCAGTACCTGC
GCAAGCATCTTTTCCCCGTGTGCGCTGAGCTCAGACTCGTAGGCCTGCTC
AATCCGCTGGCACTTCCCAGTCATGTAGCTCGCGGCGATTGCGTGCCGTT
TCGCGAGGGAATCGCCATCTCCAGATCCTCGCACAGGGGCCCTGCTACTA
GCACGCCGCCCACGAGGTACATCGATGTCGGTCTACCGCGACTGGTCGAG
GTTGATCGCGCCGTCGCCCCGCGCACCCGTGTCACCGTTGACATGAAACC
ATCCGGCGATGACCATCACAACGTGCCCGGCAAGTACCTTTTCGGGCGCT
TGGTGTCTCGCGACAGCCCCCGAGCGGAGCACATGTACTGGGGCTATCAG
GTCCGCACAGCCAAGTGCTTATCCGATGTCTTTTCCAACAGCGTCGTCTG
CGAGAAGTACGACCTTGTCATCGGTACCTCGGAGCGCGGTACCCCCATTG
ACGCTTTCGATCAAAACGCCGCCTTCCACCCTTGTAACAACCTTCTTGTT
GTGTTTGGTGGAGTCCAAGGCCTAGAGCACAGCGTAATCGGTGACAAGCG
CCTTGAGCAGCTCAATTTGTGTTCTGATCCCAGCAAATCACCGCAGAGTG
CCCACCCTACATACGAGGTGGCCGATCTGTTTGACTTCTACGTTAACACC
TGCCCGCTTCAAGGCTCACGTACTATTCGCACTGAAGAAGCATTGCTCAT
CTCGCTAGCTGCGCTTCAACCAATCATCAACAAAAACTACACTTAA