Gcaud959.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud959.t1
Unique NameGcaud959.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length246
Homology
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BLAST of Gcaud959.t1 vs. uniprot
Match: A0A2V3IL72_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL72_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 5.210e-17
Identity = 59/198 (29.80%), Postives = 99/198 (50.00%), Query Frame = 0 
Query:   37 HESTLVIPLVRQQQEEAVFAVNSSSTGFARTSQAGLTVQRGTSGVLNFAFTINAIEAETLANMDEQFSSSLSVSESEEYRRLREDYRSGFGIPFLRFLGINLNNRQVSREEMERSFELREDYNTQSSIA-QQILSNVQVQQLQISGQLTAFGTSFIPTTVFAFIRIARIQTQDGMTLTVVSQSGDNLVAADAGGNTVP 233
            HE   V+   R+ Q      ++  +  F    QA L V+ G     +F + I+ + +  LA  D  F+S+++  E   Y   +  Y  G  IPFLR LGI+LN        ++ +   R+DY    +IA +QI+ + +  +L+I+G ++  G S  P+T   F++ +R+   D   L VVS + D++VA D   N +P
Sbjct:   41 HELREVVKYERETQ-----VLSDHALLFGPIGQATLNVRLGLRASFSFNYRIDGVTSAYLAASDHIFTSTMNSRERILYEEAKRGYNGGLDIPFLRQLGIHLNESH----SLDANLVSRDDYYALKAIAARQIMQSFRGGKLRINGTISVIGVSEQPSTARVFVKFSRVTLVDNTVLHVVSSNNDDVVAGDDSHNMLP 229
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BLAST of Gcaud959.t1 vs. uniprot
Match: R7Q4Y7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4Y7_CHOCR)

HSP 1 Score: 72.8 bits (177), Expect = 8.570e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:  143 VSREEMERSFELREDYNTQSSIAQQILSNVQVQQLQISGQLTAFGTSFIPTTVFAFIRIARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGNIDIV 242
            +S+EE+    E  E++  +      IL  V   +++I+G LTA G S IPT  FAF+R+ARI+ +DG T  VVS   ++++AAD  G+ V +S    DI+
Sbjct:   13 LSKEELVEKRESSEEFRKREQALTSILETVADTRIRINGTLTATGVSQIPTVAFAFVRLARIEFEDGSTQLVVSNKNEDIIAADEDGDAVGTSDQESDIL 112
The following BLAST results are available for this feature:
BLAST of Gcaud959.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IL72_9FLOR5.210e-1729.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q4Y7_CHOCR8.570e-1339.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..245
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6413_length_1189_cov_7.680328contigNODE_6413_length_1189_cov_7.680328:141..878 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud959.t1Gcaud959.t1Gracilaria caudata M_176_S67 malemRNANODE_6413_length_1189_cov_7.680328 141..878 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud959.t1 ID=Gcaud959.t1|Name=Gcaud959.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=246bp
MIAPRNLFTLSMVSLLTLVSASAVARHNSVIPIVDIHESTLVIPLVRQQQ
EEAVFAVNSSSTGFARTSQAGLTVQRGTSGVLNFAFTINAIEAETLANMD
EQFSSSLSVSESEEYRRLREDYRSGFGIPFLRFLGINLNNRQVSREEMER
SFELREDYNTQSSIAQQILSNVQVQQLQISGQLTAFGTSFIPTTVFAFIR
IARIQTQDGMTLTVVSQSGDNLVAADAGGNTVPSSGGNIDIVPLF*
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