Gcaud2129.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2129.t1
Unique NameGcaud2129.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:1779..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1217718.ALOU01000060_gene612
Preferred namersmE
PFAMsMethyltrans_RNA
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09761
Evalue2.06e-25
EggNOG OGsCOG1385@1|root,COG1385@2|Bacteria,1MXCU@1224|Proteobacteria,2VJS2@28216|Betaproteobacteria,1K1P3@119060|Burkholderiaceae
EC2.1.1.193
DescriptionSpecifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2129Gcaud2129Gracilaria caudata M_176_S67 malegeneNODE_116_length_48691_cov_4.274671 1779..2546 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1.stop1Gcaud2129.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_116_length_48691_cov_4.274671 1779..1781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1.CDS1Gcaud2129.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 1779..2546 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1.exon1Gcaud2129.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 1779..2546 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1.start1Gcaud2129.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_116_length_48691_cov_4.274671 2544..2546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2129.t1Gcaud2129.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_116_length_48691_cov_4.274671 1779..2546 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=256bp
MTDASRERISYPTGKAKSETRVFVDSFLRPEEVVQLPQEERKHLRVRRFR
NGDRLVLFNSLGQTAAAVYQNEAAIILELQGSEVRDKSFSYLIAIPRSPS
RADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSM
RDSTPSIAVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRV
LLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLL
FRNRC*
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spliced messenger RNA

>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:1779..2546- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGATGCTTCTCGAGAGCGAATTTCCTATCCAACTGGCAAAGCAAA
ATCTGAAACGCGAGTTTTTGTGGATTCTTTTCTTCGACCAGAAGAAGTGG
TGCAGCTCCCACAGGAGGAACGGAAACATCTGCGTGTTAGACGCTTCAGA
AATGGTGATAGACTTGTTCTGTTCAACTCTCTGGGGCAGACTGCCGCTGC
TGTGTATCAGAATGAAGCAGCAATCATCCTTGAGCTTCAAGGTTCAGAGG
TTCGGGACAAAAGCTTTTCCTACCTAATAGCGATCCCAAGATCACCATCT
AGAGCAGACTGGCTTGTGGAAAAGCTAACCGAACTTGGTACAGACTCAAT
CTACTTCATGCAAACGAAGCGAACAATCGTTGCTGATCCTTCACCCAATA
AACTGCAGAGATGGAAACGAATCGCAATTTCGGCTTCGAAGCAATCAATG
CGAGATTCCACTCCATCAATTGCAGTTGTGGACTTTGAAACAGCCCTTGC
GGTAGCAACCCGACATCCACTCCCTTTCTTACTCTGTCCGAAAGGCAAAC
CTTTGTTAACAGGGTCGGTCTTGGATGACGTCGAAAGAGAAGGACGCGTC
CTACTACTGGTTGGGCCCGAAGGAGGATTTGACTCCGAAGAAATTGATAA
GCTAATGAATACTGGGGCTGTTCGGGTGTCTCTCGGCGGGAACCGACTTA
GAACCGAGACAGCTGCTCTTGCTTCAGCTGCTGTCCTTTCCCAACTTCTC
TTTCGCAACAGATGTTGA
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protein sequence of Gcaud2129.t1

>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=256bp
MTDASRERISYPTGKAKSETRVFVDSFLRPEEVVQLPQEERKHLRVRRFR
NGDRLVLFNSLGQTAAAVYQNEAAIILELQGSEVRDKSFSYLIAIPRSPS
RADWLVEKLTELGTDSIYFMQTKRTIVADPSPNKLQRWKRIAISASKQSM
RDSTPSIAVVDFETALAVATRHPLPFLLCPKGKPLLTGSVLDDVEREGRV
LLLVGPEGGFDSEEIDKLMNTGAVRVSLGGNRLRTETAALASAAVLSQLL
FRNRC*
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mRNA from alignment at NODE_116_length_48691_cov_4.274671:1779..2546-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=768bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:1779..2546- (Gracilaria caudata M_176_S67 male)
ATGACGGATGCTTCTCGAGAGCGAATTTCCTATCCAACTGGCAAAGCAAA
ATCTGAAACGCGAGTTTTTGTGGATTCTTTTCTTCGACCAGAAGAAGTGG
TGCAGCTCCCACAGGAGGAACGGAAACATCTGCGTGTTAGACGCTTCAGA
AATGGTGATAGACTTGTTCTGTTCAACTCTCTGGGGCAGACTGCCGCTGC
TGTGTATCAGAATGAAGCAGCAATCATCCTTGAGCTTCAAGGTTCAGAGG
TTCGGGACAAAAGCTTTTCCTACCTAATAGCGATCCCAAGATCACCATCT
AGAGCAGACTGGCTTGTGGAAAAGCTAACCGAACTTGGTACAGACTCAAT
CTACTTCATGCAAACGAAGCGAACAATCGTTGCTGATCCTTCACCCAATA
AACTGCAGAGATGGAAACGAATCGCAATTTCGGCTTCGAAGCAATCAATG
CGAGATTCCACTCCATCAATTGCAGTTGTGGACTTTGAAACAGCCCTTGC
GGTAGCAACCCGACATCCACTCCCTTTCTTACTCTGTCCGAAAGGCAAAC
CTTTGTTAACAGGGTCGGTCTTGGATGACGTCGAAAGAGAAGGACGCGTC
CTACTACTGGTTGGGCCCGAAGGAGGATTTGACTCCGAAGAAATTGATAA
GCTAATGAATACTGGGGCTGTTCGGGTGTCTCTCGGCGGGAACCGACTTA
GAACCGAGACAGCTGCTCTTGCTTCAGCTGCTGTCCTTTCCCAACTTCTC
TTTCGCAACAGATGTTGA
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Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:1779..2546-

>Gcaud2129.t1 ID=Gcaud2129.t1|Name=Gcaud2129.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=768bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:1779..2546- (Gracilaria caudata M_176_S67 male)
ATGACGGATGCTTCTCGAGAGCGAATTTCCTATCCAACTGGCAAAGCAAA
ATCTGAAACGCGAGTTTTTGTGGATTCTTTTCTTCGACCAGAAGAAGTGG
TGCAGCTCCCACAGGAGGAACGGAAACATCTGCGTGTTAGACGCTTCAGA
AATGGTGATAGACTTGTTCTGTTCAACTCTCTGGGGCAGACTGCCGCTGC
TGTGTATCAGAATGAAGCAGCAATCATCCTTGAGCTTCAAGGTTCAGAGG
TTCGGGACAAAAGCTTTTCCTACCTAATAGCGATCCCAAGATCACCATCT
AGAGCAGACTGGCTTGTGGAAAAGCTAACCGAACTTGGTACAGACTCAAT
CTACTTCATGCAAACGAAGCGAACAATCGTTGCTGATCCTTCACCCAATA
AACTGCAGAGATGGAAACGAATCGCAATTTCGGCTTCGAAGCAATCAATG
CGAGATTCCACTCCATCAATTGCAGTTGTGGACTTTGAAACAGCCCTTGC
GGTAGCAACCCGACATCCACTCCCTTTCTTACTCTGTCCGAAAGGCAAAC
CTTTGTTAACAGGGTCGGTCTTGGATGACGTCGAAAGAGAAGGACGCGTC
CTACTACTGGTTGGGCCCGAAGGAGGATTTGACTCCGAAGAAATTGATAA
GCTAATGAATACTGGGGCTGTTCGGGTGTCTCTCGGCGGGAACCGACTTA
GAACCGAGACAGCTGCTCTTGCTTCAGCTGCTGTCCTTTCCCAACTTCTC
TTTCGCAACAGATGTTGA
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