Gcaud2135.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2135.t1
Unique NameGcaud2135.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_116_length_48691_cov_4.274671contigNODE_116_length_48691_cov_4.274671:13746..14141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD06077
PFAMsUMP1
Max annot lvl2759|Eukaryota
KEGG koko:K11599
KEGG Pathwayko03050,map03050
GOsGO:0000003,GO:0001541,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005851,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009987,GO:0010001,GO:0010467,GO:0014003,GO:0016043,GO:0019538,GO:0021782,GO:0022008,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042063,GO:0042552,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051716,GO:0061458,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:1901564,GO:1901566,GO:1901576
Evalue2.73e-17
EggNOG OGsKOG3061@1|root,KOG3061@2759|Eukaryota
Descriptionproteasome assembly
COG categoryGM
BRITEko00000,ko00001,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2135Gcaud2135Gracilaria caudata M_176_S67 malegeneNODE_116_length_48691_cov_4.274671 13746..14141 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2135.t1.stop1Gcaud2135.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_116_length_48691_cov_4.274671 13746..13748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2135.t1.CDS1Gcaud2135.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_116_length_48691_cov_4.274671 13746..14141 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2135.t1.exon1Gcaud2135.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_116_length_48691_cov_4.274671 13746..14141 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2135.t1.start1Gcaud2135.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_116_length_48691_cov_4.274671 14139..14141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2135.t1Gcaud2135.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_116_length_48691_cov_4.274671 13746..14141 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2135.t1 ID=Gcaud2135.t1|Name=Gcaud2135.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=132bp
MDRPTRTQLSPDVAPGSTLKYSATPLHPVKTIQEQSHNTEQLTRRKLQAA
AYGAALPMRIAMSKHMLSQCQRLPGLPSSYAGLESFTGRDEKIDYEDFMN
LPQNSPYMPELQPREQLEQILGVTARSQAPL*
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spliced messenger RNA

>Gcaud2135.t1 ID=Gcaud2135.t1|Name=Gcaud2135.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:13746..14141- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGCCCCACTCGCACGCAGCTGAGCCCCGACGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCACTACACCCTGTGAAAACGATCCAGG
AGCAGTCACACAACACCGAACAGCTCACCCGTCGCAAGCTGCAGGCCGCC
GCGTACGGCGCCGCGCTGCCCATGCGAATCGCCATGAGCAAGCACATGCT
TTCACAGTGCCAGCGTCTACCAGGGCTCCCTTCTTCCTACGCCGGCCTCG
AGTCCTTCACTGGTCGCGACGAGAAGATCGACTACGAAGATTTCATGAAC
CTGCCACAGAACTCCCCGTACATGCCAGAGCTGCAGCCAAGAGAGCAGCT
GGAACAAATTCTTGGCGTAACGGCGCGCTCTCAAGCTCCGCTCTAG
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protein sequence of Gcaud2135.t1

>Gcaud2135.t1 ID=Gcaud2135.t1|Name=Gcaud2135.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=132bp
MDRPTRTQLSPDVAPGSTLKYSATPLHPVKTIQEQSHNTEQLTRRKLQAA
AYGAALPMRIAMSKHMLSQCQRLPGLPSSYAGLESFTGRDEKIDYEDFMN
LPQNSPYMPELQPREQLEQILGVTARSQAPL*
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mRNA from alignment at NODE_116_length_48691_cov_4.274671:13746..14141-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2135.t1 ID=Gcaud2135.t1|Name=Gcaud2135.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=396bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:13746..14141- (Gracilaria caudata M_176_S67 male)
ATGGATCGCCCCACTCGCACGCAGCTGAGCCCCGACGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCACTACACCCTGTGAAAACGATCCAGG
AGCAGTCACACAACACCGAACAGCTCACCCGTCGCAAGCTGCAGGCCGCC
GCGTACGGCGCCGCGCTGCCCATGCGAATCGCCATGAGCAAGCACATGCT
TTCACAGTGCCAGCGTCTACCAGGGCTCCCTTCTTCCTACGCCGGCCTCG
AGTCCTTCACTGGTCGCGACGAGAAGATCGACTACGAAGATTTCATGAAC
CTGCCACAGAACTCCCCGTACATGCCAGAGCTGCAGCCAAGAGAGCAGCT
GGAACAAATTCTTGGCGTAACGGCGCGCTCTCAAGCTCCGCTCTAG
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Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:13746..14141-

>Gcaud2135.t1 ID=Gcaud2135.t1|Name=Gcaud2135.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=396bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:13746..14141- (Gracilaria caudata M_176_S67 male)
ATGGATCGCCCCACTCGCACGCAGCTGAGCCCCGACGTGGCGCCCGGCTC
CACGCTCAAGTACTCCGCCACGCCACTACACCCTGTGAAAACGATCCAGG
AGCAGTCACACAACACCGAACAGCTCACCCGTCGCAAGCTGCAGGCCGCC
GCGTACGGCGCCGCGCTGCCCATGCGAATCGCCATGAGCAAGCACATGCT
TTCACAGTGCCAGCGTCTACCAGGGCTCCCTTCTTCCTACGCCGGCCTCG
AGTCCTTCACTGGTCGCGACGAGAAGATCGACTACGAAGATTTCATGAAC
CTGCCACAGAACTCCCCGTACATGCCAGAGCTGCAGCCAAGAGAGCAGCT
GGAACAAATTCTTGGCGTAACGGCGCGCTCTCAAGCTCCGCTCTAG
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