Gcaud2889.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2889.t1
Unique Name	Gcaud2889.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	457

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_637_length_20512_cov_3.841634	contig	NODE_637_length_20512_cov_3.841634:16196..19266 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3656.XP_008459317.1
PFAMs	Ribonuclease_T2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K01166
Evalue	2.98e-13
EggNOG OGs	KOG1642@1\|root,KOG1642@2759\|Eukaryota,37NG0@33090\|Viridiplantae,3GD7G@35493\|Streptophyta,4JF49@91835\|fabids
EC	3.1.27.1
Description	Belongs to the RNase T2 family
COG category	A
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2889	Gcaud2889	Gracilaria caudata M_176_S67 male	gene	NODE_637_length_20512_cov_3.841634 16196..19266 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1	Gcaud2889.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_637_length_20512_cov_3.841634 16196..19266 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1.start1	Gcaud2889.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_637_length_20512_cov_3.841634 16196..16198 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1.CDS1	Gcaud2889.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_637_length_20512_cov_3.841634 16196..16816 +
Gcaud2889.t1.CDS2	Gcaud2889.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_637_length_20512_cov_3.841634 18517..19266 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1.exon1	Gcaud2889.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_637_length_20512_cov_3.841634 16196..16816 +
Gcaud2889.t1.exon2	Gcaud2889.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_637_length_20512_cov_3.841634 18517..19266 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1.intron1	Gcaud2889.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_637_length_20512_cov_3.841634 16817..18516 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2889.t1.stop1	Gcaud2889.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_637_length_20512_cov_3.841634 19264..19266 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+
coding sequence from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+

mRNA sequence

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=457bp
METDRSSVGAPDKFFDLESELQTCDSLLFTREDYPISELLFDTTDNELDD
DMFHSSVLDAASTEVDGASRMGSNTTTPPFRPSVAHSSPPHANTQPPPQV
VLFNEVKYEARSTQPYEGGVHYATSDTRRQERANNHAYPYADYTRLTLPE
YGSTMPLPGTADARTAQRTLPRVPYSAASLEMANTAASALAGTLQQALKA
EPMEPPIYPPPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRR
YWPDLDRADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLN
SHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCL
HKTRFDTINCVSQCATPRADCCDPTQPILIPYWSHGGSDRDEGAQSGAEG
EQLAQQRKTYRVLSWMGGVFAVALLSLMALCWLSPRLSTRSSSRLPNRTS
YTRINA*

spliced messenger RNA

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAACGGACCGCAGCAGCGTGGGAGCACCAGACAAGTTCTTTGATCT
TGAGAGTGAGCTGCAAACGTGCGACAGCCTTTTGTTTACTCGTGAAGACT
ATCCTATCAGTGAGCTACTGTTCGACACTACCGACAACGAGCTTGACGAC
GATATGTTTCACTCCTCTGTCTTGGACGCCGCCTCTACAGAAGTTGACGG
CGCCTCCAGAATGGGCTCCAACACCACCACGCCGCCCTTCCGACCCAGTG
TTGCGCATTCAAGCCCGCCACACGCAAACACGCAGCCGCCGCCTCAAGTG
GTGCTGTTCAACGAAGTGAAGTACGAAGCCAGAAGCACGCAACCGTACGA
AGGCGGCGTGCATTACGCAACCAGCGATACCAGACGACAAGAGCGCGCCA
ACAACCACGCGTACCCATACGCAGACTATACAAGGCTCACACTACCAGAG
TACGGCTCCACAATGCCGCTACCCGGCACCGCCGACGCACGCACCGCTCA
AAGGACTCTACCGCGCGTTCCGTACAGCGCGGCGTCGCTGGAAATGGCCA
ACACAGCCGCCAGCGCGCTGGCCGGCACGTTGCAACAGGCGCTCAAGGCA
GAGCCCATGGAGCCTCCCATCTACCCGCCGCCCGCGTTCGTGGTGGCCGG
TTTGTGGCCCACCTCGCACTCGCTGCAGTCGTCGCCCACCTGTTGCTCGG
GCTCCTTTTCGCTGTCCACCATTTTCGACATTGCGCCCGCGTTGCGGCGC
TACTGGCCGGATTTGGATCGCGCCGACGAGCCGGAACTGTGGCGTCGGCA
GTGGTTGCTGCACGGCACGTGCTCCGGACTGGGGCTGCGCACGTACTTCA
AAAAGGTGCTCGAGCTCAGTCGACGCTACGACTTTCTGCGATCGCTCAAT
TCGCACGGCGTGGTGGCCAGCGCCAACAAGGCGCACGACTTCCAGCTGGT
GCAGAGCGCGCTGGACGAGGCCACCGGCGGCTACCACGTGCGCATGCGCT
GCGAGCGCGGCGCAAACAGCACCATGTTACGCGCGGTGCATGTGTGTCTG
CACAAGACGCGCTTCGATACCATCAACTGCGTGTCGCAGTGCGCCACGCC
TCGAGCCGATTGCTGCGACCCGACGCAGCCCATTCTGATCCCGTACTGGA
GCCACGGCGGCAGTGATCGAGACGAGGGCGCACAGAGCGGCGCTGAGGGC
GAGCAGCTCGCGCAGCAACGCAAGACGTACCGCGTGCTGAGCTGGATGGG
CGGCGTGTTTGCAGTGGCGCTGCTGTCGCTGATGGCGTTGTGTTGGCTGT
CGCCACGCCTCTCCACGCGCTCGTCGTCGAGACTGCCCAATCGCACCTCG
TACACGCGCATCAACGCATGA

protein sequence of Gcaud2889.t1

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
METDRSSVGAPDKFFDLESELQTCDSLLFTREDYPISELLFDTTDNELDD
DMFHSSVLDAASTEVDGASRMGSNTTTPPFRPSVAHSSPPHANTQPPPQV
VLFNEVKYEARSTQPYEGGVHYATSDTRRQERANNHAYPYADYTRLTLPE
YGSTMPLPGTADARTAQRTLPRVPYSAASLEMANTAASALAGTLQQALKA
EPMEPPIYPPPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRR
YWPDLDRADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLN
SHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCL
HKTRFDTINCVSQCATPRADCCDPTQPILIPYWSHGGSDRDEGAQSGAEG
EQLAQQRKTYRVLSWMGGVFAVALLSLMALCWLSPRLSTRSSSRLPNRTS
YTRINA*

mRNA from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3071bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+ (Gracilaria caudata M_176_S67 male)
ATGGAAACGGACCGCAGCAGCGTGGGAGCACCAGACAAGTTCTTTGATCT
TGAGAGTGAGCTGCAAACGTGCGACAGCCTTTTGTTTACTCGTGAAGACT
ATCCTATCAGTGAGCTACTGTTCGACACTACCGACAACGAGCTTGACGAC
GATATGTTTCACTCCTCTGTCTTGGACGCCGCCTCTACAGAAGTTGACGG
CGCCTCCAGAATGGGCTCCAACACCACCACGCCGCCCTTCCGACCCAGTG
TTGCGCATTCAAGCCCGCCACACGCAAACACGCAGCCGCCGCCTCAAGTG
GTGCTGTTCAACGAAGTGAAGTACGAAGCCAGAAGCACGCAACCGTACGA
AGGCGGCGTGCATTACGCAACCAGCGATACCAGACGACAAGAGCGCGCCA
ACAACCACGCGTACCCATACGCAGACTATACAAGGCTCACACTACCAGAG
TACGGCTCCACAATGCCGCTACCCGGCACCGCCGACGCACGCACCGCTCA
AAGGACTCTACCGCGCGTTCCGTACAGCGCGGCGTCGCTGGAAATGGCCA
ACACAGCCGCCAGCGCGCTGGCCGGCACGTTGCAACAGGCGCTCAAGGCA
GAGCCCATGGAGCCTCCCATCGTGCACACCGGCGCCACCTCAACGAGCGC
AACGCGCAGAGAGATGCAATGGCCGTTCGAGTCGGCCATGAGGGTTTCCA
GCGCTCAATCGCGCTCGCTACGCGCGGCTGGACCGTCGACGGGACGCGTG
CAGAGCAGTCGATACGTGTGCAAAATCTGCGCCAAGAGCTTTAAACGCGG
GCACAATCTGAAGATTCATCAACGACTTCACACGGGAGATCATCCGTACG
CATGTCCGTTTAGCGGGTGTTCAAAGGAGTACAAGTGGAAATCGAGTATT
GTGTCACATATCGGGTGGCATCGCACGAAGAGGGGGGAGAGTGTGAGCGG
ATATAACACGGTGTCCAGTCTGGTGAAACTGGGGAAGGAAATGAAGCAGC
AGCGCCTGCGCGCAGAACCGCTACGCGCGGTGGCTCTGGGCGATTTGGCC
AGATTGCAGTATCACAACGCGCACGACAGCGCGTTGGTATCGGCGCCATC
CACTGCTGCAAGCGGTGTGATTGAGAATGTGCCAAGATTACAACCGCTCA
GAGGTGCAGCTTCTCGTACGACCACGTATTTCACACAGAACAACAACACG
TGCACGGTGAACCAATTGCCGAGCTTCTCGTCGCTGCGACTGGCGGCAAG
AGCACAAGCGTCGTCGCAAGCAGGCGTGGCGCCGACGCAGGAGAGATGGC
GGTACTTGACGCAGGCGGACACGAGCAGCACGCACAACCGAGCTGGCGCG
ACGAGCGGGGGGGCGTATGCAACGGGCAACTACGTGAGAAGGGAACGGTG
CATGACGACgcggtggacgcgcggcgtgggaccgatgtcagaggcgttgg
aggagtttggcggcggtggcggtggcggcggcggcgtgacgacgacgggc
ggcatgggcggcgcgacggaggacgcgggcgtggacgagggcgacgcgac
gcaggcgtgctggggcggcggcTCGTGGTGGACGACGCCCAACGCAAGCA
GCGGCGCGGGTGATGACGGTGATGCGGCGAGCACGCGCGCGTTGTATGAT
CGATTAGAGAGATGATCATTGGATGTATGTTTTTTTTTTTTAAAACCAaa
aagcaaagaaaaaaaaaaaaggaaagagaaacatgaaaaaaaGGGGGCGA
GTGACTCGGGCCGAGTCGGAAACCGTTTCGAGAGCGCCCGAGTTCGCTTT
GTACGTAGCGCGAGCCGTATCTACCTTCGTAAAAAGTTGACGACAGCAGC
GCGCGTCGGGTGCGCCGCAGCTGCAAGCGCGCGCAAACGGCGCCACGTTC
ACCGTCCGTACGcgccgccacacacgcgcccgcagcatccgccacagccg
ccgctgtcgccgcctcccccagccccccctccgcgccgccgcccctcccg
tcccgtcccgcccgccgcACATCCCCTACCCTTGAAAAAAACATGCGTCG
CGCCTCActgctgccgctgctgctgctCGCCACCGCTGTATCCGCCAGCA
CGCGCGCCCGCGCGCGTCACGCGTGGCCGCTTGTTGCGCTGCCATCCACT
TCCGCGCCCTCTTCCGCGCCCTCTTCCGCGCCCTCTTCCGCGCCCGTGTG
CGCGTCCAACCGCAGCGTCAGCACGCCGCCGCCGCGCGCCATCTTCGACA
TGTACGTGCTCGCGTTGCAGTGGCCTTTTTCGTCGTGCTCGCTGTTATCG
TCGCACGCGCCCATCTGTCAGTACCCGCCGCCCGCGTTCGTGGTGGCCGG
TTTGTGGCCCACCTCGCACTCGCTGCAGTCGTCGCCCACCTGTTGCTCGG
GCTCCTTTTCGCTGTCCACCATTTTCGACATTGCGCCCGCGTTGCGGCGC
TACTGGCCGGATTTGGATCGCGCCGACGAGCCGGAACTGTGGCGTCGGCA
GTGGTTGCTGCACGGCACGTGCTCCGGACTGGGGCTGCGCACGTACTTCA
AAAAGGTGCTCGAGCTCAGTCGACGCTACGACTTTCTGCGATCGCTCAAT
TCGCACGGCGTGGTGGCCAGCGCCAACAAGGCGCACGACTTCCAGCTGGT
GCAGAGCGCGCTGGACGAGGCCACCGGCGGCTACCACGTGCGCATGCGCT
GCGAGCGCGGCGCAAACAGCACCATGTTACGCGCGGTGCATGTGTGTCTG
CACAAGACGCGCTTCGATACCATCAACTGCGTGTCGCAGTGCGCCACGCC
TCGAGCCGATTGCTGCGACCCGACGCAGCCCATTCTGATCCCGTACTGGA
GCCACGGCGGCAGTGATCGAGACGAGGGCGCACAGAGCGGCGCTGAGGGC
GAGCAGCTCGCGCAGCAACGCAAGACGTACCGCGTGCTGAGCTGGATGGG
CGGCGTGTTTGCAGTGGCGCTGCTGTCGCTGATGGCGTTGTGTTGGCTGT
CGCCACGCCTCTCCACGCGCTCGTCGTCGAGACTGCCCAATCGCACCTCG
TACACGCGCATCAACGCATGA

Coding sequence (CDS) from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1371bp|location=Sequence derived from alignment at NODE_637_length_20512_cov_3.841634:16196..19266+ (Gracilaria caudata M_176_S67 male)
ATGGAAACGGACCGCAGCAGCGTGGGAGCACCAGACAAGTTCTTTGATCT
TGAGAGTGAGCTGCAAACGTGCGACAGCCTTTTGTTTACTCGTGAAGACT
ATCCTATCAGTGAGCTACTGTTCGACACTACCGACAACGAGCTTGACGAC
GATATGTTTCACTCCTCTGTCTTGGACGCCGCCTCTACAGAAGTTGACGG
CGCCTCCAGAATGGGCTCCAACACCACCACGCCGCCCTTCCGACCCAGTG
TTGCGCATTCAAGCCCGCCACACGCAAACACGCAGCCGCCGCCTCAAGTG
GTGCTGTTCAACGAAGTGAAGTACGAAGCCAGAAGCACGCAACCGTACGA
AGGCGGCGTGCATTACGCAACCAGCGATACCAGACGACAAGAGCGCGCCA
ACAACCACGCGTACCCATACGCAGACTATACAAGGCTCACACTACCAGAG
TACGGCTCCACAATGCCGCTACCCGGCACCGCCGACGCACGCACCGCTCA
AAGGACTCTACCGCGCGTTCCGTACAGCGCGGCGTCGCTGGAAATGGCCA
ACACAGCCGCCAGCGCGCTGGCCGGCACGTTGCAACAGGCGCTCAAGGCA
GAGCCCATGGAGCCTCCCATCTACCCGCCGCCCGCGTTCGTGGTGGCCGG
TTTGTGGCCCACCTCGCACTCGCTGCAGTCGTCGCCCACCTGTTGCTCGG
GCTCCTTTTCGCTGTCCACCATTTTCGACATTGCGCCCGCGTTGCGGCGC
TACTGGCCGGATTTGGATCGCGCCGACGAGCCGGAACTGTGGCGTCGGCA
GTGGTTGCTGCACGGCACGTGCTCCGGACTGGGGCTGCGCACGTACTTCA
AAAAGGTGCTCGAGCTCAGTCGACGCTACGACTTTCTGCGATCGCTCAAT
TCGCACGGCGTGGTGGCCAGCGCCAACAAGGCGCACGACTTCCAGCTGGT
GCAGAGCGCGCTGGACGAGGCCACCGGCGGCTACCACGTGCGCATGCGCT
GCGAGCGCGGCGCAAACAGCACCATGTTACGCGCGGTGCATGTGTGTCTG
CACAAGACGCGCTTCGATACCATCAACTGCGTGTCGCAGTGCGCCACGCC
TCGAGCCGATTGCTGCGACCCGACGCAGCCCATTCTGATCCCGTACTGGA
GCCACGGCGGCAGTGATCGAGACGAGGGCGCACAGAGCGGCGCTGAGGGC
GAGCAGCTCGCGCAGCAACGCAAGACGTACCGCGTGCTGAGCTGGATGGG
CGGCGTGTTTGCAGTGGCGCTGCTGTCGCTGATGGCGTTGTGTTGGCTGT
CGCCACGCCTCTCCACGCGCTCGTCGTCGAGACTGCCCAATCGCACCTCG
TACACGCGCATCAACGCATGA