Gcaud2889.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2889.t1
Unique NameGcaud2889.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length457
Homology
BLAST of Gcaud2889.t1 vs. uniprot
Match: A0A2V3IFI5_9FLOR (Ribonuclease S-7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFI5_9FLOR)

HSP 1 Score: 305 bits (782), Expect = 1.470e-97
Identity = 153/256 (59.77%), Postives = 175/256 (68.36%), Query Frame = 0
Query:  208 YPPPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCLHKTRFDTINCVSQCATPRAD-----CCDPTQPILIPYWSHGGSDRDEGAQSGAEGEQLAQQRKTYRVLSWMGGVFAVALLSLMALCWLSPRL----STRSSSRLPNRTSYTRI 454
            YPPP F + GLWP S S  + PTCC+ SFSLSTIFDIAPALRRYWPD + ADE  LWR QW+LHG+CSGLGLRTYFKKVLELSRRYDF+R+LNSHGVVAS NKAH F+LVQ+AL+EATGGY VRMRCE+  N T+L AVHVCLH TRFDTINC   C     D     CCDP++ I IPYWSH     +EG    A     A Q    + L W+   FA+ L  L+ L WL   L    +   S R  +RT Y RI
Sbjct:   88 YPPPTFTIGGLWPLSTSRSAQPTCCARSFSLSTIFDIAPALRRYWPDFEHADEAALWRTQWVLHGSCSGLGLRTYFKKVLELSRRYDFVRALNSHGVVASTNKAHAFELVQNALNEATGGYRVRMRCEKALNHTVLHAVHVCLHNTRFDTINCPHTCVISTNDSSQQGCCDPSKRIYIPYWSHASDSSEEGQHDAA---MPAGQLLVTKYLPWLLRAFALLLFLLVMLYWLCTSLLRSAAASPSRRASSRTQYARI 340          
BLAST of Gcaud2889.t1 vs. uniprot
Match: UPI001E1D889B (ribonuclease S-2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D889B)

HSP 1 Score: 161 bits (408), Expect = 5.790e-43
Identity = 90/230 (39.13%), Postives = 121/230 (52.61%), Query Frame = 0
Query:  209 PPPAFVVAGLWPTSHSLQSSPTCC----------SGSFSLSTIFDIAPALRRYWPDLD-RADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCLHKTRFDTINCVSQCATPRADCCDPTQPILIPYWSHGGSDRDEG-----AQSGAEGEQLAQQRKTYRVLSWMGGVFAV 422
            PP +F+V GLWP+  S    P CC          + SF+L  I D+ P LRR WPDL  R     LW+ QW  HGTCS   +R YF+K LEL+RR+DF+R+L++ G+VASA + H    VQ A++ A+GG  VR+ C R    T+L A+HVC     F  ++C   C      CC   + I IPYWS   +   E        +GA GE   +    Y +   M G+  V
Sbjct:    3 PPASFIVGGLWPSQDS-GHRPLCCLASPHALGTRNTSFALGRIVDLEPQLRRLWPDLSSRESATRLWKMQWDKHGTCSRFTVRGYFRKALELARRFDFMRALSAEGIVASAQRRHPLSKVQRAVNYASGGSSVRLECRRTWQGTILTALHVCFDADGFRAVDCPFACKKRDDTCCHTGELIQIPYWSRESNIPPENETLATGPNGASGETDTRGNGNY-LAGQMAGILVV 230          
BLAST of Gcaud2889.t1 vs. uniprot
Match: S4RT20_PETMA (Uncharacterized protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RT20_PETMA)

HSP 1 Score: 76.3 bits (186), Expect = 5.160e-12
Identity = 53/191 (27.75%), Postives = 89/191 (46.60%), Query Frame = 0
Query:  215 VAGLWPTSHSLQSSPTCCSGS--FSLSTIFDIAPALRRYWPDLDRADEPELWRRQWLLHGTCSGL-----GLRTYFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRC---ERGANSTMLRAVHVCLHKTRFDTINC-------------VSQCATPRADC-CDPTQPILIP 381
            + GLW T+H      T C+ S  F +  I D+ P L ++WPDL++ +  +LW+ +W+ HGTC+           YF K +EL ++ D  ++L+  GV  S    +  + +  A   A G    +++C    +  N+ +L  + +C  +  F  +NC              S+  TP  D  CDP + I  P
Sbjct:   64 IHGLW-TNHR-----TFCNKSWHFDVKEIEDLLPQLDQFWPDLEKTNGTDLWKHEWIRHGTCAATLEALNSQHNYFSKTMELYQKLDISKALSDAGVTPSNTVFYKEEQILEAFSTAFG-VKAKLQCLTVPQEENTQLLGQIQMCWSR-EFSLVNCSRHAEAGIPVPNSYSKSFTPSNDIVCDPAKIIHYP 246          
BLAST of Gcaud2889.t1 vs. uniprot
Match: A0A6P8QVA4_GEOSA (ribonuclease T2 isoform X1 n=2 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QVA4_GEOSA)

HSP 1 Score: 72.4 bits (176), Expect = 1.110e-10
Identity = 45/160 (28.12%), Postives = 81/160 (50.62%), Query Frame = 0
Query:  209 PPPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEPELWRRQWLLHGTCSGL-----GLRTYFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRC---ERGANSTMLRAVHVCLHKTRFDTINC 360
            PP  + + GLWP   ++ +     S  F ++ I D+ P +   WPD+   +  +LW+ +WL HGTC+           YF K LEL ++YD   +L   G+V S +  +  + +++A+ + T G   +++C   + G +  +L  + +C  K  F+  NC
Sbjct:   58 PPTVWTLHGLWPGKANMCNK----SWPFKINEIQDLLPEMIHLWPDILHPNASQLWKHEWLKHGTCAAKLDCMNSEHKYFSKALELYKKYDLNGALVKFGIVPSTSY-YQMKDIKAAIMK-TYGVMPKIQCLPPDCGQSPQILGQIEICFTK-EFELRNC 210          
BLAST of Gcaud2889.t1 vs. uniprot
Match: A0A2G5E488_AQUCA (Uncharacterized protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5E488_AQUCA)

HSP 1 Score: 69.7 bits (169), Expect = 7.120e-10
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 0
Query:  210 PPAFVVAGLWPT-SHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVH 347
            P  F + GLWP  S +L+  P  C       T  D+       W  + + D  E+WR +WL HGTCSGL    YF   LEL    D L +L S+G    ++      L+ + L++   G + R+ CE G  + M++ +H
Sbjct:   52 PQRFTIKGLWPRDSLNLEKQPEYCKND----TDIDLT------WFGVKKDDNVEMWREEWLRHGTCSGLTNYQYFHLALELIHEVDVLNALRSNGYYPGSHYK-PMDLINTVLNKM--GVYPRIVCEHG--NPMIKEIH 175          
BLAST of Gcaud2889.t1 vs. uniprot
Match: UPI001B7EB275 (ribonuclease T2 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7EB275)

HSP 1 Score: 64.3 bits (155), Expect = 6.110e-8
Identity = 47/158 (29.75%), Postives = 76/158 (48.10%), Query Frame = 0
Query:  213 FVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEPELWRRQWLLHGTCSGL--GLRT---YFKKVLELSRRYDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHV--RMRC---ERGANSTMLRAVHVCLHKTRFDTINC 360
            + V GLWP S    +S    S  F +  +  I   L  +WPD+   +  ELW+ +WL HGTC+ +   L T   YF K LEL ++ D   +L    ++ S  K +  + +++AL      Y V  +++C     G ++ +L  +  C  K  F  +NC
Sbjct:   69 WTVHGLWPKSVQTCNS----SWHFKIENVKGILSELEHWWPDVLHLNSTELWKHEWLKHGTCAAMLESLDTQEKYFSKALELYQKIDLNSALKKFDILPS--KYYMIENIENAL---VSFYEVIPKIQCLSPTGGGSAQLLGQIEFCYTKD-FQLLNC 216          
BLAST of Gcaud2889.t1 vs. uniprot
Match: A0A6L2PCI0_TANCI (Extracellular ribonuclease LE n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2PCI0_TANCI)

HSP 1 Score: 63.5 bits (153), Expect = 1.810e-7
Identity = 46/179 (25.70%), Postives = 76/179 (42.46%), Query Frame = 0
Query:  210 PPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEP-----ELWRRQWLLHGTCSGLGLRTYFKKVLELSRR--YDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCLHKTRFDTINCVSQCATPRADCCDPTQPILIP 381
            P  F + GLWP  +   S+       F  + I  +A  L +YWP+L    +      + W+ +W  HG  SGLG+R YF+K LEL +         L +  +  +    +    +Q+A+ +  GG+   + C +   S+  + +     + RF   N   +        CDP   IL P
Sbjct:  137 PTEFTIHGLWPQPNGAPSTEP-----FDANKIATLASELSKYWPNLKSKQQQIAFNIDFWKTEWNKHGKYSGLGVREYFEKSLELHKDAGQGLKAKLAAEKITPTIYNTYKLVDIQAAVTKINGGFSGTIICVQRKGSSNKQQIQ----EIRFRYTNSFQKQNNLSPSNCDPE--ILFP 304          
BLAST of Gcaud2889.t1 vs. uniprot
Match: A0A6L2LNC2_TANCI (Ribonuclease 2-like n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LNC2_TANCI)

HSP 1 Score: 60.1 bits (144), Expect = 7.690e-7
Identity = 35/126 (27.78%), Postives = 61/126 (48.41%), Query Frame = 0
Query:  210 PPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRRYWPDLDRADEP-----ELWRRQWLLHGTCSGLGLRTYFKKVLELSRR--YDFLRSLNSHGVVASANKAHDFQLVQSALDEATGGY 328
            P  F + GLWP  +   S+      SF+   +  +A  L RYWP+L  + +      + W+ +W  HG  SGLG+R YF+K LEL +         L +  ++ +    +    +Q+A+++   G+
Sbjct:   28 PTEFTIHGLWPEPNGAPST-----DSFNGQKLATLATELSRYWPNLKSSQQQIAFNIDFWKGEWNKHGQYSGLGVREYFEKSLELYKDAGQGLRAKLAAEKIIPTIYTTYKLVDIQAAVNKINDGF 148          
The following BLAST results are available for this feature:
BLAST of Gcaud2889.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IFI5_9FLOR1.470e-9759.77Ribonuclease S-7 n=1 Tax=Gracilariopsis chorda Tax... [more]
UPI001E1D889B5.790e-4339.13ribonuclease S-2-like n=1 Tax=Mercenaria mercenari... [more]
S4RT20_PETMA5.160e-1227.75Uncharacterized protein n=2 Tax=Petromyzon marinus... [more]
A0A6P8QVA4_GEOSA1.110e-1028.13ribonuclease T2 isoform X1 n=2 Tax=Geotrypetes ser... [more]
A0A2G5E488_AQUCA7.120e-1032.37Uncharacterized protein n=1 Tax=Aquilegia coerulea... [more]
UPI001B7EB2756.110e-829.75ribonuclease T2 n=1 Tax=Carcharodon carcharias Tax... [more]
A0A6L2PCI0_TANCI1.810e-725.70Extracellular ribonuclease LE n=1 Tax=Tanacetum ci... [more]
A0A6L2LNC2_TANCI7.690e-727.78Ribonuclease 2-like n=2 Tax=Tanacetum cinerariifol... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001568Ribonuclease T2-likePFAMPF00445Ribonuclease_T2coord: 209..360
e-value: 8.4E-27
score: 94.5
IPR001568Ribonuclease T2-likePANTHERPTHR11240RIBONUCLEASE T2coord: 209..369
IPR036430Ribonuclease T2-like superfamilyGENE3D3.90.730.10coord: 191..382
e-value: 4.6E-33
score: 116.9
IPR036430Ribonuclease T2-like superfamilySUPERFAMILY55895Ribonuclease Rh-likecoord: 207..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..98
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 434..456
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..411
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 412..433
NoneNo IPR availableCDDcd00374RNase_T2coord: 213..360
e-value: 1.79182E-29
score: 112.164
NoneNo IPR availableTMHMMTMhelixcoord: 412..434

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_637_length_20512_cov_3.841634contigNODE_637_length_20512_cov_3.841634:16196..19266 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2889.t1Gcaud2889.t1Gracilaria caudata M_176_S67 malemRNANODE_637_length_20512_cov_3.841634 16196..19266 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2889.t1 ID=Gcaud2889.t1|Name=Gcaud2889.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
METDRSSVGAPDKFFDLESELQTCDSLLFTREDYPISELLFDTTDNELDD
DMFHSSVLDAASTEVDGASRMGSNTTTPPFRPSVAHSSPPHANTQPPPQV
VLFNEVKYEARSTQPYEGGVHYATSDTRRQERANNHAYPYADYTRLTLPE
YGSTMPLPGTADARTAQRTLPRVPYSAASLEMANTAASALAGTLQQALKA
EPMEPPIYPPPAFVVAGLWPTSHSLQSSPTCCSGSFSLSTIFDIAPALRR
YWPDLDRADEPELWRRQWLLHGTCSGLGLRTYFKKVLELSRRYDFLRSLN
SHGVVASANKAHDFQLVQSALDEATGGYHVRMRCERGANSTMLRAVHVCL
HKTRFDTINCVSQCATPRADCCDPTQPILIPYWSHGGSDRDEGAQSGAEG
EQLAQQRKTYRVLSWMGGVFAVALLSLMALCWLSPRLSTRSSSRLPNRTS
YTRINA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001568RNase_T2-like
IPR036430RNase_T2-like_sf