Gcaud2146.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2146.t1
Unique Name	Gcaud2146.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	521

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:45763..47325 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2146	Gcaud2146	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 45763..47325 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2146.t1.start1	Gcaud2146.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 45763..45765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2146.t1.CDS1	Gcaud2146.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 45763..47325 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2146.t1.exon1	Gcaud2146.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 45763..47325 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2146.t1.stop1	Gcaud2146.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 47323..47325 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2146.t1	Gcaud2146.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 45763..47325 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+

mRNA sequence

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=521bp
MFGTAQSTPSLFASSQAQSTSLFGAASSSSLFGGGSAQQSSSSFLFGGAA
PQSTAGTLFGGAASSSSLFVGGASSSSLFGGGASSSSLFGSASSSSLFGG
SASSSSLFGGVSASSSSLFGQPSGGSLFGSAPSTQAQQPGAQQQQQIEIT
LRTRISELPQNFQNDLFAVERHLREQRNKASLLWSKRGDVDAKLLQTKTN
ASDISRLLVKLRAELDALEANGNSLKAAVRLERASAQPVMTALENLSRRG
YSGYVDQNGLPYMDSGGRVQAAHVPDGYFTRIVEELEARATEYKAEVDEI
AAFLKAQGVMMSSGASGFGGASASLLDNLSQRYVDIGLSGSDAKSVPRGT
IEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQ
ADMREKVEKERQRLQTEKRAADGALQFVSQMNSLNQPSSAPGTFVTATGF
GASSAAAISSTQSSLFQSSATTSSLFGGASSSAGSSSGSLFGGGFSFGGS
TPASATDGGEPNRATRRKRE*

spliced messenger RNA

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGGCACAGCACAGTCCACCCCGTCATTGTTTGCTAGCTCGCAGGC
GCAGAGTACCTCCCTGTTCGGTGCGGCCAGCTCTTCGTCTCTCTTCGGCG
GGGGATCTGCGCAACAATCTTCTTCTTCGTTCTTGTTTGGCGGCGCCGCT
CCGCAATCAACTGCGGGCACTTTGTTCGGTGGTGCGGCAAGCTCCTCCTC
TCTTTTCGTCGGCGGCGCTAGCTCTTCTTCTTTGTTTGGTGGTGGCGCCA
GCTCTTCCTCGTTATTTGGCAGCGCCAGTTCCTCTTCGTTGTTTGGCGGC
TCGGCCAGTTCTTCTTCCTTGTTCGGTGGCGTATCTGCCAGCTCTTCATC
ACTATTTGGACAGCCTAGCGGCGGATCTCTCTTCGGAAGTGCTCCCTCGA
CACAAGCGCAGCAACCCGGCGCTCAACAACAACAGCAAATCGAAATCACG
CTTCGAACACGCATTTCTGAACTGCCGCAGAACTTCCAGAACGATCTTTT
TGCTGTCGAACGTCATCTACGAGAGCAACGGAATAAAGCCTCCCTTCTTT
GGTCGAAGCGGGGTGATGTGGACGCAAAGCTCTTACAAACAAAAACTAAC
GCCTCCGATATATCTAGGCTGTTGGTCAAGCTAAGGGCGGAATTAGACGC
CCTCGAGGCGAACGGAAACTCCCTCAAGGCCGCCGTGAGGTTGGAGCGTG
CCTCTGCACAGCCAGTCATGACAGCGTTGGAAAACCTTTCGCGAAGGGGT
TACTCTGGGTATGTGGATCAAAACGGATTGCCTTACATGGACTCAGGGGG
TAGGGTGCAGGCGGCGCATGTTCCAGATGGGTATTTCACGCGTATTGTAG
AGGAACTGGAAGCGAGAGCAACAGAGTATAAGGCCGAGGTTGACGAAATA
GCAGCTTTCCTGAAGGCACAAGGTGTTATGATGAGCAGCGGCGCAAGCGG
CTTTGGCGGTGCAAGCGCCAGTTTATTGGATAATCTATCGCAGAGGTACG
TAGATATCGGGCTGTCCGGTAGCGACGCGAAAAGTGTTCCACGGGGTACA
ATCGAGGACATTATCCGACGCCAATATGAATACTTCATGGTGGTTGCTAG
TCACATTGCTGGGGTTCATGAGAACTTGCGTGCAGTGCGGGAACAGTTTT
TGCAAGTTTTGATGGAGCGCGATTCAGACGTACCAAACCCCTTTCAGCAA
GCAGACATGCGCGAAAAGGTGGAAAAGGAACGGCAACGTCTCCAAACCGA
GAAACGCGCGGCCGACGGAGCGTTGCAGTTCGTGAGTCAGATGAACTCCC
TTAACCAGCCGTCGTCAGCGCCTGGAACCTTCGTTACGGCTACAGGATTC
GGCGCTTCGAGCGCTGCAGCGATATCGTCAACGCAGTCATCGCTTTTCCA
GTCTAGTGCGACGACAAGCTCTCTCTTCGGCGGTGCATCCTCTAGCGCGG
GCAGTTCGTCAGGAAGCTTGTTCGGTGGCGGGTTTAGCTTCGGCGGCAGC
ACCCCGGCTTCGGCAACAGACGGTGGTGAGCCAAATCGAGCTACAAGACG
TAAAAGAGAGTAA

protein sequence of Gcaud2146.t1

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MFGTAQSTPSLFASSQAQSTSLFGAASSSSLFGGGSAQQSSSSFLFGGAA
PQSTAGTLFGGAASSSSLFVGGASSSSLFGGGASSSSLFGSASSSSLFGG
SASSSSLFGGVSASSSSLFGQPSGGSLFGSAPSTQAQQPGAQQQQQIEIT
LRTRISELPQNFQNDLFAVERHLREQRNKASLLWSKRGDVDAKLLQTKTN
ASDISRLLVKLRAELDALEANGNSLKAAVRLERASAQPVMTALENLSRRG
YSGYVDQNGLPYMDSGGRVQAAHVPDGYFTRIVEELEARATEYKAEVDEI
AAFLKAQGVMMSSGASGFGGASASLLDNLSQRYVDIGLSGSDAKSVPRGT
IEDIIRRQYEYFMVVASHIAGVHENLRAVREQFLQVLMERDSDVPNPFQQ
ADMREKVEKERQRLQTEKRAADGALQFVSQMNSLNQPSSAPGTFVTATGF
GASSAAAISSTQSSLFQSSATTSSLFGGASSSAGSSSGSLFGGGFSFGGS
TPASATDGGEPNRATRRKRE*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGCACAGCACAGTCCACCCCGTCATTGTTTGCTAGCTCGCAGGC
GCAGAGTACCTCCCTGTTCGGTGCGGCCAGCTCTTCGTCTCTCTTCGGCG
GGGGATCTGCGCAACAATCTTCTTCTTCGTTCTTGTTTGGCGGCGCCGCT
CCGCAATCAACTGCGGGCACTTTGTTCGGTGGTGCGGCAAGCTCCTCCTC
TCTTTTCGTCGGCGGCGCTAGCTCTTCTTCTTTGTTTGGTGGTGGCGCCA
GCTCTTCCTCGTTATTTGGCAGCGCCAGTTCCTCTTCGTTGTTTGGCGGC
TCGGCCAGTTCTTCTTCCTTGTTCGGTGGCGTATCTGCCAGCTCTTCATC
ACTATTTGGACAGCCTAGCGGCGGATCTCTCTTCGGAAGTGCTCCCTCGA
CACAAGCGCAGCAACCCGGCGCTCAACAACAACAGCAAATCGAAATCACG
CTTCGAACACGCATTTCTGAACTGCCGCAGAACTTCCAGAACGATCTTTT
TGCTGTCGAACGTCATCTACGAGAGCAACGGAATAAAGCCTCCCTTCTTT
GGTCGAAGCGGGGTGATGTGGACGCAAAGCTCTTACAAACAAAAACTAAC
GCCTCCGATATATCTAGGCTGTTGGTCAAGCTAAGGGCGGAATTAGACGC
CCTCGAGGCGAACGGAAACTCCCTCAAGGCCGCCGTGAGGTTGGAGCGTG
CCTCTGCACAGCCAGTCATGACAGCGTTGGAAAACCTTTCGCGAAGGGGT
TACTCTGGGTATGTGGATCAAAACGGATTGCCTTACATGGACTCAGGGGG
TAGGGTGCAGGCGGCGCATGTTCCAGATGGGTATTTCACGCGTATTGTAG
AGGAACTGGAAGCGAGAGCAACAGAGTATAAGGCCGAGGTTGACGAAATA
GCAGCTTTCCTGAAGGCACAAGGTGTTATGATGAGCAGCGGCGCAAGCGG
CTTTGGCGGTGCAAGCGCCAGTTTATTGGATAATCTATCGCAGAGGTACG
TAGATATCGGGCTGTCCGGTAGCGACGCGAAAAGTGTTCCACGGGGTACA
ATCGAGGACATTATCCGACGCCAATATGAATACTTCATGGTGGTTGCTAG
TCACATTGCTGGGGTTCATGAGAACTTGCGTGCAGTGCGGGAACAGTTTT
TGCAAGTTTTGATGGAGCGCGATTCAGACGTACCAAACCCCTTTCAGCAA
GCAGACATGCGCGAAAAGGTGGAAAAGGAACGGCAACGTCTCCAAACCGA
GAAACGCGCGGCCGACGGAGCGTTGCAGTTCGTGAGTCAGATGAACTCCC
TTAACCAGCCGTCGTCAGCGCCTGGAACCTTCGTTACGGCTACAGGATTC
GGCGCTTCGAGCGCTGCAGCGATATCGTCAACGCAGTCATCGCTTTTCCA
GTCTAGTGCGACGACAAGCTCTCTCTTCGGCGGTGCATCCTCTAGCGCGG
GCAGTTCGTCAGGAAGCTTGTTCGGTGGCGGGTTTAGCTTCGGCGGCAGC
ACCCCGGCTTCGGCAACAGACGGTGGTGAGCCAAATCGAGCTACAAGACG
TAAAAGAGAGTAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+

>Gcaud2146.t1 ID=Gcaud2146.t1|Name=Gcaud2146.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1563bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:45763..47325+ (Gracilaria caudata M_176_S67 male)
ATGTTCGGCACAGCACAGTCCACCCCGTCATTGTTTGCTAGCTCGCAGGC
GCAGAGTACCTCCCTGTTCGGTGCGGCCAGCTCTTCGTCTCTCTTCGGCG
GGGGATCTGCGCAACAATCTTCTTCTTCGTTCTTGTTTGGCGGCGCCGCT
CCGCAATCAACTGCGGGCACTTTGTTCGGTGGTGCGGCAAGCTCCTCCTC
TCTTTTCGTCGGCGGCGCTAGCTCTTCTTCTTTGTTTGGTGGTGGCGCCA
GCTCTTCCTCGTTATTTGGCAGCGCCAGTTCCTCTTCGTTGTTTGGCGGC
TCGGCCAGTTCTTCTTCCTTGTTCGGTGGCGTATCTGCCAGCTCTTCATC
ACTATTTGGACAGCCTAGCGGCGGATCTCTCTTCGGAAGTGCTCCCTCGA
CACAAGCGCAGCAACCCGGCGCTCAACAACAACAGCAAATCGAAATCACG
CTTCGAACACGCATTTCTGAACTGCCGCAGAACTTCCAGAACGATCTTTT
TGCTGTCGAACGTCATCTACGAGAGCAACGGAATAAAGCCTCCCTTCTTT
GGTCGAAGCGGGGTGATGTGGACGCAAAGCTCTTACAAACAAAAACTAAC
GCCTCCGATATATCTAGGCTGTTGGTCAAGCTAAGGGCGGAATTAGACGC
CCTCGAGGCGAACGGAAACTCCCTCAAGGCCGCCGTGAGGTTGGAGCGTG
CCTCTGCACAGCCAGTCATGACAGCGTTGGAAAACCTTTCGCGAAGGGGT
TACTCTGGGTATGTGGATCAAAACGGATTGCCTTACATGGACTCAGGGGG
TAGGGTGCAGGCGGCGCATGTTCCAGATGGGTATTTCACGCGTATTGTAG
AGGAACTGGAAGCGAGAGCAACAGAGTATAAGGCCGAGGTTGACGAAATA
GCAGCTTTCCTGAAGGCACAAGGTGTTATGATGAGCAGCGGCGCAAGCGG
CTTTGGCGGTGCAAGCGCCAGTTTATTGGATAATCTATCGCAGAGGTACG
TAGATATCGGGCTGTCCGGTAGCGACGCGAAAAGTGTTCCACGGGGTACA
ATCGAGGACATTATCCGACGCCAATATGAATACTTCATGGTGGTTGCTAG
TCACATTGCTGGGGTTCATGAGAACTTGCGTGCAGTGCGGGAACAGTTTT
TGCAAGTTTTGATGGAGCGCGATTCAGACGTACCAAACCCCTTTCAGCAA
GCAGACATGCGCGAAAAGGTGGAAAAGGAACGGCAACGTCTCCAAACCGA
GAAACGCGCGGCCGACGGAGCGTTGCAGTTCGTGAGTCAGATGAACTCCC
TTAACCAGCCGTCGTCAGCGCCTGGAACCTTCGTTACGGCTACAGGATTC
GGCGCTTCGAGCGCTGCAGCGATATCGTCAACGCAGTCATCGCTTTTCCA
GTCTAGTGCGACGACAAGCTCTCTCTTCGGCGGTGCATCCTCTAGCGCGG
GCAGTTCGTCAGGAAGCTTGTTCGGTGGCGGGTTTAGCTTCGGCGGCAGC
ACCCCGGCTTCGGCAACAGACGGTGGTGAGCCAAATCGAGCTACAAGACG
TAAAAGAGAGTAA