Gcaud2138.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2138.t1
Unique Name	Gcaud2138.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	355

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:19933..21206 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2138	Gcaud2138	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 19933..21206 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1	Gcaud2138.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 19933..21206 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1.start1	Gcaud2138.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 19933..19935 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1.CDS1	Gcaud2138.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 19933..19978 +
Gcaud2138.t1.CDS2	Gcaud2138.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 20188..21206 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1.exon1	Gcaud2138.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 19933..19978 +
Gcaud2138.t1.exon2	Gcaud2138.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 20188..21206 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1.intron1	Gcaud2138.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_116_length_48691_cov_4.274671 19979..20187 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2138.t1.stop1	Gcaud2138.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 21204..21206 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+

mRNA sequence

>Gcaud2138.t1 ID=Gcaud2138.t1|Name=Gcaud2138.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=355bp
LFRIVFNLLYAVANGANRMTLSNRVLSHIMQSYPSMSAIQLLSFLALFQH
IQVPDFLKHYLVRSIGGAIHALNPKPHHGRTVLATVFDTHRQPPVTEHTF
YPKHLAVVDNEQHFWNLVCRNGLADSVITFLMRTERDSLVQIVHTLVRYI
EPRRENIESIAEMLSDISYMMSTRECDTLLRDMTTAENWSKRATMLVASV
FLYQPKESYETQLPVRLHWAHVGVQPIMELASASIDGIMFAVQIRSTFDR
DSSIVLSCRCRETTSLVQYANIRYVAWIIDADCRCDCLHLLRRYSDGSML
ASEGRAVGSLAEVFRLQRSVTLLNVADVRNWRIKHGKDCTAQMKIRIELQ
RAQP*

spliced messenger RNA

>Gcaud2138.t1 ID=Gcaud2138.t1|Name=Gcaud2138.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1065bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTTCGGATTGTGTTCAACTTGCTCTATGCTGTAGCAAATGGAGCAAA
CAGGATGACGCTTTCCAATCGTGTGCTCAGCCATATAATGCAATCTTACC
CCAGCATGTCTGCCATCCAACTGCTCAGCTTTTTGGCGCTGTTTCAACAC
ATTCAGGTTCCTGACTTTTTGAAGCACTACTTGGTTCGAAGCATCGGTGG
TGCCATTCACGCGCTCAACCCCAAACCGCATCATGGCCGCACCGTTTTGG
CAACTGTATTCGATACACATCGGCAGCCGCCCGTCACGGAACACACTTTC
TATCCAAAACACTTGGCCGTTGTTGACAACGAACAGCACTTCTGGAATCT
GGTATGCCGAAATGGATTAGCAGACTCCGTCATCACATTCCTGATGCGCA
CAGAGCGCGACAGTCTGGTGCAAATCGTGCACACACTCGTTCGGTATATA
GAGCCACGGAGGGAGAACATCGAGAGCATCGCGGAGATGTTGAGCGATAT
CAGCTACATGATGAGTACTCGAGAATGTGATACACTGCTTCGAGACATGA
CCACCGCTGAAAACTGGTCCAAACGGGCTACCATGCTTGTTGCGTCCGTG
TTCTTGTATCAGCCGAAGGAGAGCTACGAGACGCAACTGCCTGTGAGACT
GCATTGGGCTCACGTTGGAGTGCAGCCTATCATGGAACTGGCCAGCGCCT
CGATTGACGGCATCATGTTTGCCGTGCAGATACGCAGCACGTTTGACCGC
GACAGCAGCATTGTGCTGAGCTGTCGCTGCAGGGAGACAACCTCTTTGGT
ACAGTACGCAAACATTCGCTATGTGGCATGGATCATAGACGCAGACTGTC
GATGTGATTGCTTGCACTTGCTCCGAAGGTATTCTGACGGCAGTATGCTT
GCTTCTGAAGGACGAGCTGTTGGAAGCCTGGCCGAAGTGTTTCGGCTCCA
GCGCAGCGTCACGTTGTTAAATGTGGCTGACGTAAGGAATTGGCGAATCA
AACATGGCAAAGACTGCACTGCGCAAATGAAAATTCGCATCGAATTGCAA
CGAGCACAGCCGTAA

protein sequence of Gcaud2138.t1

>Gcaud2138.t1 ID=Gcaud2138.t1|Name=Gcaud2138.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=355bp
LFRIVFNLLYAVANGANRMTLSNRVLSHIMQSYPSMSAIQLLSFLALFQH
IQVPDFLKHYLVRSIGGAIHALNPKPHHGRTVLATVFDTHRQPPVTEHTF
YPKHLAVVDNEQHFWNLVCRNGLADSVITFLMRTERDSLVQIVHTLVRYI
EPRRENIESIAEMLSDISYMMSTRECDTLLRDMTTAENWSKRATMLVASV
FLYQPKESYETQLPVRLHWAHVGVQPIMELASASIDGIMFAVQIRSTFDR
DSSIVLSCRCRETTSLVQYANIRYVAWIIDADCRCDCLHLLRRYSDGSML
ASEGRAVGSLAEVFRLQRSVTLLNVADVRNWRIKHGKDCTAQMKIRIELQ
RAQP*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2138.t1 ID=Gcaud2138.t1|Name=Gcaud2138.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1274bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+ (Gracilaria caudata M_176_S67 male)
CTGTTTCGGATTGTGTTCAACTTGCTCTATGCTGTAGCAAATGGAGGTGC
GTCGATTTTTACGTTGCGGTTGTACGCTTTTTAGTGCAACGCAACCGATT
GATTACCCCCCGCCAGTTTGCCGTCAGCACTCCGCTCTTGTGGCTTCCTA
AAGAGCGAGTTCTGTTTGCTGACTATTACTTTCTCAATGTGCAAATTGTG
ATTAAGAGAATGCATCTCACTCACCTTGTTGATCTTGCGTTTGCTTCTCA
CGCAGCAAACAGGATGACGCTTTCCAATCGTGTGCTCAGCCATATAATGC
AATCTTACCCCAGCATGTCTGCCATCCAACTGCTCAGCTTTTTGGCGCTG
TTTCAACACATTCAGGTTCCTGACTTTTTGAAGCACTACTTGGTTCGAAG
CATCGGTGGTGCCATTCACGCGCTCAACCCCAAACCGCATCATGGCCGCA
CCGTTTTGGCAACTGTATTCGATACACATCGGCAGCCGCCCGTCACGGAA
CACACTTTCTATCCAAAACACTTGGCCGTTGTTGACAACGAACAGCACTT
CTGGAATCTGGTATGCCGAAATGGATTAGCAGACTCCGTCATCACATTCC
TGATGCGCACAGAGCGCGACAGTCTGGTGCAAATCGTGCACACACTCGTT
CGGTATATAGAGCCACGGAGGGAGAACATCGAGAGCATCGCGGAGATGTT
GAGCGATATCAGCTACATGATGAGTACTCGAGAATGTGATACACTGCTTC
GAGACATGACCACCGCTGAAAACTGGTCCAAACGGGCTACCATGCTTGTT
GCGTCCGTGTTCTTGTATCAGCCGAAGGAGAGCTACGAGACGCAACTGCC
TGTGAGACTGCATTGGGCTCACGTTGGAGTGCAGCCTATCATGGAACTGG
CCAGCGCCTCGATTGACGGCATCATGTTTGCCGTGCAGATACGCAGCACG
TTTGACCGCGACAGCAGCATTGTGCTGAGCTGTCGCTGCAGGGAGACAAC
CTCTTTGGTACAGTACGCAAACATTCGCTATGTGGCATGGATCATAGACG
CAGACTGTCGATGTGATTGCTTGCACTTGCTCCGAAGGTATTCTGACGGC
AGTATGCTTGCTTCTGAAGGACGAGCTGTTGGAAGCCTGGCCGAAGTGTT
TCGGCTCCAGCGCAGCGTCACGTTGTTAAATGTGGCTGACGTAAGGAATT
GGCGAATCAAACATGGCAAAGACTGCACTGCGCAAATGAAAATTCGCATC
GAATTGCAACGAGCACAGCCGTAA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+

>Gcaud2138.t1 ID=Gcaud2138.t1|Name=Gcaud2138.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1065bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:19933..21206+ (Gracilaria caudata M_176_S67 male)
CTGTTTCGGATTGTGTTCAACTTGCTCTATGCTGTAGCAAATGGAGCAAA
CAGGATGACGCTTTCCAATCGTGTGCTCAGCCATATAATGCAATCTTACC
CCAGCATGTCTGCCATCCAACTGCTCAGCTTTTTGGCGCTGTTTCAACAC
ATTCAGGTTCCTGACTTTTTGAAGCACTACTTGGTTCGAAGCATCGGTGG
TGCCATTCACGCGCTCAACCCCAAACCGCATCATGGCCGCACCGTTTTGG
CAACTGTATTCGATACACATCGGCAGCCGCCCGTCACGGAACACACTTTC
TATCCAAAACACTTGGCCGTTGTTGACAACGAACAGCACTTCTGGAATCT
GGTATGCCGAAATGGATTAGCAGACTCCGTCATCACATTCCTGATGCGCA
CAGAGCGCGACAGTCTGGTGCAAATCGTGCACACACTCGTTCGGTATATA
GAGCCACGGAGGGAGAACATCGAGAGCATCGCGGAGATGTTGAGCGATAT
CAGCTACATGATGAGTACTCGAGAATGTGATACACTGCTTCGAGACATGA
CCACCGCTGAAAACTGGTCCAAACGGGCTACCATGCTTGTTGCGTCCGTG
TTCTTGTATCAGCCGAAGGAGAGCTACGAGACGCAACTGCCTGTGAGACT
GCATTGGGCTCACGTTGGAGTGCAGCCTATCATGGAACTGGCCAGCGCCT
CGATTGACGGCATCATGTTTGCCGTGCAGATACGCAGCACGTTTGACCGC
GACAGCAGCATTGTGCTGAGCTGTCGCTGCAGGGAGACAACCTCTTTGGT
ACAGTACGCAAACATTCGCTATGTGGCATGGATCATAGACGCAGACTGTC
GATGTGATTGCTTGCACTTGCTCCGAAGGTATTCTGACGGCAGTATGCTT
GCTTCTGAAGGACGAGCTGTTGGAAGCCTGGCCGAAGTGTTTCGGCTCCA
GCGCAGCGTCACGTTGTTAAATGTGGCTGACGTAAGGAATTGGCGAATCA
AACATGGCAAAGACTGCACTGCGCAAATGAAAATTCGCATCGAATTGCAA
CGAGCACAGCCGTAA