Gcaud2143.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud2143.t1
Unique Name	Gcaud2143.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	566

Homology

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BLAST of Gcaud2143.t1 vs. uniprot
Match: A0A2V3IH14_9FLOR (Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH14_9FLOR)

HSP 1 Score: 584 bits (1506), Expect = 4.690e-202
Identity = 349/571 (61.12%), Postives = 419/571 (73.38%), Query Frame = 0

Query:    1 MSPSPYLLSLSDDTLTAHDDALCVVQLPEHFDASVAAFASTADALAIASSPSWSAGRVTVFT-TSDQVQLHTAASSITKLALSAHTNFVAVAYADNTIQLLNVPSHQSSEFSVSSRVLSLSFDSQTTILSVCTAKAILLLSLPTLRQISEITPTSATRSFPRATTLRTCLTSAAISPLYPLLASSDDTGCVTVYDISAPSTPHTCARFTSALRTPATTMCFSSTGVLAVAGFDKHIRLYDSRLKTLLFSIAIAAPATALSFREHLIAVATTNSTISLIEAHVDENSFVYNARYETPESQTTALLLCPPCVPILNTKASVEEHSP-KRQVDPLSQTFSDVESFLSRLPPLPPDKQAKQTHVSKRLHQRRSLPIISEQSTILDHDEMRAAQLPAHLSASFLTDEQ-----ASPPSSAGTASPVSHSVPRKDSQDRQDVMDNLDVRHCSPESSPLMRSVSGQRVSAERRRSEEFFNFGAPVLRRAGVGRVSEAGEENEAMNMFRSILRQEMDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDETVTQLEKEVRRLKADNVRLRKKYGL 564
            MS SPYLLSLSDDT++ HD+AL + + P  FD S  AFAS A A+A+ASS      R+ V   +S Q  L    S++TKLALS  T F+A AY  NT+ L N+ SH++ E+SV SRVLSLS DS  +ILS+CT+K I+LLS+    Q+S+ITPTSATRSFPRA+TLRT LT AA SP+  LLASSDDTGCVTVYD   PS+  T ARFTSALR PATT+ FS+TGVLAVAGFDKHIRLYDS L TLLFSIAIAAPATALSFR+ ++AVA T+S+I+LI+A VD+NSF Y AR E  ++ T ALLLCPP V  L+T+A  +      +QVDPLS+TFSDVE FLSRLPP P DK +    VSKRL  RRS+PI+S    I  HD+ +AAQLP HLSASFLTDEQ      SPPSSAG +SP++ SV RK S        + D  H S E SPL+ S++ +     +  SEE F+  A VLR AGV R+ EAGE+   ++ FRS+LRQEMDVIRTDLHNDI+ IHSE+VLLA+ QSRELK VVKERD TV++LE EVRRLKADN+RLRKKY L
Sbjct:    1 MSNSPYLLSLSDDTVSFHDEALRLAEPPPQFDPSATAFASNAHAIAVASSSGLEGSRIHVVQHSSPQHTLSAGHSAVTKLALSPDTRFLAAAYPHNTVHLFNITSHETFEYSVPSRVLSLSLDSNNSILSICTSKTIVLLSVTDFEQLSDITPTSATRSFPRASTLRTSLTCAAFSPIKSLLASSDDTGCVTVYDTENPSSLRTHARFTSALRAPATTLAFSTTGVLAVAGFDKHIRLYDSALNTLLFSIAIAAPATALSFRDDVLAVAGTDSSIALIQADVDDNSFTYIARSEASQAHTVALLLCPPSV-TLSTRAKHDAGDALSQQVDPLSKTFSDVEGFLSRLPPRPRDKHSSS--VSKRLTPRRSMPILSTPPLISQHDQRKAAQLPVHLSASFLTDEQDEEASRSPPSSAGASSPLNRSVSRKHSHAMSHDSTSFDSEHSSREHSPLLASIAEEEPERNQS-SEELFDGSASVLREAGVTRLPEAGED--LIHQFRSMLRQEMDVIRTDLHNDILGIHSEIVLLATTQSRELKNVVKERDATVSRLENEVRRLKADNLRLRKKYEL 565

The following BLAST results are available for this feature:

BLAST of Gcaud2143.t1 vs. uniprot

BLAST of Gcaud2143.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IH14_9FLOR	4.690e-202	61.12	Protein NEDD1 n=1 Tax=Gracilariopsis chorda TaxID=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 527..561
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..418
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..447
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 419..435
None	No IPR available	PANTHER	PTHR44414	PROTEIN NEDD1	coord: 179..278
None	No IPR available	CDD	cd14686	bZIP	coord: 522..561 e-value: 0.00186835 score: 34.8285
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 152..194 e-value: 12.0 score: 10.2 coord: 62..101 e-value: 10.0 score: 10.6 coord: 200..239 e-value: 0.24 score: 20.5 coord: 103..140 e-value: 230.0 score: 2.1
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 165..326 e-value: 1.2E-12 score: 49.9
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 7..164 e-value: 5.1E-7 score: 31.0
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 58..287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:36898..38595 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2143.t1	Gcaud2143.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_116_length_48691_cov_4.274671 36898..38595 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud2143.t1 ID=Gcaud2143.t1|Name=Gcaud2143.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=566bp
MSPSPYLLSLSDDTLTAHDDALCVVQLPEHFDASVAAFASTADALAIASS
PSWSAGRVTVFTTSDQVQLHTAASSITKLALSAHTNFVAVAYADNTIQLL
NVPSHQSSEFSVSSRVLSLSFDSQTTILSVCTAKAILLLSLPTLRQISEI
TPTSATRSFPRATTLRTCLTSAAISPLYPLLASSDDTGCVTVYDISAPST
PHTCARFTSALRTPATTMCFSSTGVLAVAGFDKHIRLYDSRLKTLLFSIA
IAAPATALSFREHLIAVATTNSTISLIEAHVDENSFVYNARYETPESQTT
ALLLCPPCVPILNTKASVEEHSPKRQVDPLSQTFSDVESFLSRLPPLPPD
KQAKQTHVSKRLHQRRSLPIISEQSTILDHDEMRAAQLPAHLSASFLTDE
QASPPSSAGTASPVSHSVPRKDSQDRQDVMDNLDVRHCSPESSPLMRSVS
GQRVSAERRRSEEFFNFGAPVLRRAGVGRVSEAGEENEAMNMFRSILRQE
MDVIRTDLHNDIVSIHSELVLLASAQSRELKEVVKERDETVTQLEKEVRR
LKADNVRLRKKYGLK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR036322	WD40_repeat_dom_sf