Gcaud2141.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2141.t1
Unique Name	Gcaud2141.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_116_length_48691_cov_4.274671	contig	NODE_116_length_48691_cov_4.274671:28143..29306 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX40024
PFAMs	S1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02945
KEGG Pathway	ko03010,map03010
KEGG Module	M00178
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0016020,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0097159,GO:1901363
Evalue	6.63e-123
EggNOG OGs	COG0539@1\|root,2QUY8@2759\|Eukaryota
Description	RNA binding
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2141	Gcaud2141	Gracilaria caudata M_176_S67 male	gene	NODE_116_length_48691_cov_4.274671 28143..29306 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2141.t1.stop1	Gcaud2141.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_116_length_48691_cov_4.274671 28143..28145 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2141.t1.CDS1	Gcaud2141.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_116_length_48691_cov_4.274671 28143..29306 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2141.t1.exon1	Gcaud2141.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_116_length_48691_cov_4.274671 28143..29306 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2141.t1.start1	Gcaud2141.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_116_length_48691_cov_4.274671 29304..29306 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2141.t1	Gcaud2141.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_116_length_48691_cov_4.274671 28143..29306 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_116_length_48691_cov_4.274671:28143..29306-
coding sequence from alignment at NODE_116_length_48691_cov_4.274671:28143..29306-

mRNA sequence

>Gcaud2141.t1 ID=Gcaud2141.t1|Name=Gcaud2141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=388bp
MAFVSSFLGVAVAPPQSSSKARRCSRASPLPTRMVVIARAPKTENLSRFD
RMKLKFGAPDVSEEKSGFTYTDFEQAMSKFDYSFENGDICTGRVSQYERN
GALVDIGAKASAYCPLSEMSMNRVERPEDAVTIGEDREFQIISREDANGQ
LKVSIRRIEFARAWERVAQLQAEDVTVHAVIMSINRGGSLVHVEGLRAFL
PSSHTSVRVPREELVGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTNLV
AGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAILPDGAV
IKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKMVYEKAEEMAARYHKR
LEEERKAAADVADDIVSTLDMASLDDVGVDPVPAKAA*

spliced messenger RNA

>Gcaud2141.t1 ID=Gcaud2141.t1|Name=Gcaud2141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:28143..29306- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCGTCAGCTCCTTCCTGGGCGTCGCCGTCGCCCCACCTCAATC
TTCATCAAAGGCGCGAAGGTGTTCGCGCGCTTCGCCCCTACCGACTAGAA
TGGTCGTCATTGCTCGAGCACCCAAAACAGAAAATTTGTCAAGGTTTGAT
CGCATGAAACTGAAATTCGGTGCGCCGGATGTGTCGGAGGAGAAGTCTGG
CTTTACGTACACCGATTTCGAACAGGCCATGTCCAAGTTCGATTACAGCT
TTGAGAACGGCGATATCTGCACGGGACGTGTCAGTCAGTACGAGCGCAAT
GGGGCTCTTGTGGACATTGGCGCAAAGGCATCGGCGTACTGCCCGCTCTC
TGAGATGTCTATGAACAGGGTTGAGCGGCCAGAGGATGCGGTTACAATTG
GGGAGGATAGAGAGTTCCAAATAATTTCTAGAGAGGATGCCAATGGCCAG
CTAAAAGTGTCTATCCGTCGCATTGAATTCGCTCGCGCTTGGGAAAGAGT
TGCTCAGCTACAGGCTGAGGATGTTACAGTGCATGCTGTGATCATGTCTA
TTAATCGCGGTGGTTCTCTCGTACATGTAGAAGGTTTGCGTGCATTCCTT
CCGTCATCACACACCTCTGTCCGTGTCCCTCGGGAAGAGCTTGTGGGCAT
GGAGTTGCCGCTCAAGTTCTTAGAGGTCGACAGCGAGAAGGGAAGACTTG
TTGTTTCCCATCGCCGTGCAATCGTCGAGAAACAGATGACTAACTTAGTG
GCTGGTGAAGTGGTTGAGGGTGTCGTCCGTGGTATCAAGCCGTACGGCGC
CTTTATCGACATTGGAGGCGTTTCTGGACTGCTACACGTTTCTCAGATTT
CCCATGATCATGTCGGTGATATCGGGGCCATTTTGCCGGATGGAGCTGTA
ATCAAATGCATGATTATCAATCAGGACAAGGAAAAGGGTCGAATTTCACT
CAGCACTAAGACTTTGGAACCTGAGCCCGGAGATATGCTTCGTGATTCCA
AAATGGTTTATGAAAAGGCCGAGGAAATGGCAGCTCGGTACCATAAGCGT
CTGGAAGAAGAACGAAAAGCTGCTGCCGATGTTGCCGATGATATTGTTTC
AACATTAGACATGGCTTCATTAGATGATGTTGGCGTTGACCCCGTCCCAG
CAAAAGCAGCATGA

protein sequence of Gcaud2141.t1

>Gcaud2141.t1 ID=Gcaud2141.t1|Name=Gcaud2141.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MAFVSSFLGVAVAPPQSSSKARRCSRASPLPTRMVVIARAPKTENLSRFD
RMKLKFGAPDVSEEKSGFTYTDFEQAMSKFDYSFENGDICTGRVSQYERN
GALVDIGAKASAYCPLSEMSMNRVERPEDAVTIGEDREFQIISREDANGQ
LKVSIRRIEFARAWERVAQLQAEDVTVHAVIMSINRGGSLVHVEGLRAFL
PSSHTSVRVPREELVGMELPLKFLEVDSEKGRLVVSHRRAIVEKQMTNLV
AGEVVEGVVRGIKPYGAFIDIGGVSGLLHVSQISHDHVGDIGAILPDGAV
IKCMIINQDKEKGRISLSTKTLEPEPGDMLRDSKMVYEKAEEMAARYHKR
LEEERKAAADVADDIVSTLDMASLDDVGVDPVPAKAA*

mRNA from alignment at NODE_116_length_48691_cov_4.274671:28143..29306-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2141.t1 ID=Gcaud2141.t1|Name=Gcaud2141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:28143..29306- (Gracilaria caudata M_176_S67 male)
ATGGCTTTCGTCAGCTCCTTCCTGGGCGTCGCCGTCGCCCCACCTCAATC
TTCATCAAAGGCGCGAAGGTGTTCGCGCGCTTCGCCCCTACCGACTAGAA
TGGTCGTCATTGCTCGAGCACCCAAAACAGAAAATTTGTCAAGGTTTGAT
CGCATGAAACTGAAATTCGGTGCGCCGGATGTGTCGGAGGAGAAGTCTGG
CTTTACGTACACCGATTTCGAACAGGCCATGTCCAAGTTCGATTACAGCT
TTGAGAACGGCGATATCTGCACGGGACGTGTCAGTCAGTACGAGCGCAAT
GGGGCTCTTGTGGACATTGGCGCAAAGGCATCGGCGTACTGCCCGCTCTC
TGAGATGTCTATGAACAGGGTTGAGCGGCCAGAGGATGCGGTTACAATTG
GGGAGGATAGAGAGTTCCAAATAATTTCTAGAGAGGATGCCAATGGCCAG
CTAAAAGTGTCTATCCGTCGCATTGAATTCGCTCGCGCTTGGGAAAGAGT
TGCTCAGCTACAGGCTGAGGATGTTACAGTGCATGCTGTGATCATGTCTA
TTAATCGCGGTGGTTCTCTCGTACATGTAGAAGGTTTGCGTGCATTCCTT
CCGTCATCACACACCTCTGTCCGTGTCCCTCGGGAAGAGCTTGTGGGCAT
GGAGTTGCCGCTCAAGTTCTTAGAGGTCGACAGCGAGAAGGGAAGACTTG
TTGTTTCCCATCGCCGTGCAATCGTCGAGAAACAGATGACTAACTTAGTG
GCTGGTGAAGTGGTTGAGGGTGTCGTCCGTGGTATCAAGCCGTACGGCGC
CTTTATCGACATTGGAGGCGTTTCTGGACTGCTACACGTTTCTCAGATTT
CCCATGATCATGTCGGTGATATCGGGGCCATTTTGCCGGATGGAGCTGTA
ATCAAATGCATGATTATCAATCAGGACAAGGAAAAGGGTCGAATTTCACT
CAGCACTAAGACTTTGGAACCTGAGCCCGGAGATATGCTTCGTGATTCCA
AAATGGTTTATGAAAAGGCCGAGGAAATGGCAGCTCGGTACCATAAGCGT
CTGGAAGAAGAACGAAAAGCTGCTGCCGATGTTGCCGATGATATTGTTTC
AACATTAGACATGGCTTCATTAGATGATGTTGGCGTTGACCCCGTCCCAG
CAAAAGCAGCATGA

Coding sequence (CDS) from alignment at NODE_116_length_48691_cov_4.274671:28143..29306-

>Gcaud2141.t1 ID=Gcaud2141.t1|Name=Gcaud2141.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1164bp|location=Sequence derived from alignment at NODE_116_length_48691_cov_4.274671:28143..29306- (Gracilaria caudata M_176_S67 male)
ATGGCTTTCGTCAGCTCCTTCCTGGGCGTCGCCGTCGCCCCACCTCAATC
TTCATCAAAGGCGCGAAGGTGTTCGCGCGCTTCGCCCCTACCGACTAGAA
TGGTCGTCATTGCTCGAGCACCCAAAACAGAAAATTTGTCAAGGTTTGAT
CGCATGAAACTGAAATTCGGTGCGCCGGATGTGTCGGAGGAGAAGTCTGG
CTTTACGTACACCGATTTCGAACAGGCCATGTCCAAGTTCGATTACAGCT
TTGAGAACGGCGATATCTGCACGGGACGTGTCAGTCAGTACGAGCGCAAT
GGGGCTCTTGTGGACATTGGCGCAAAGGCATCGGCGTACTGCCCGCTCTC
TGAGATGTCTATGAACAGGGTTGAGCGGCCAGAGGATGCGGTTACAATTG
GGGAGGATAGAGAGTTCCAAATAATTTCTAGAGAGGATGCCAATGGCCAG
CTAAAAGTGTCTATCCGTCGCATTGAATTCGCTCGCGCTTGGGAAAGAGT
TGCTCAGCTACAGGCTGAGGATGTTACAGTGCATGCTGTGATCATGTCTA
TTAATCGCGGTGGTTCTCTCGTACATGTAGAAGGTTTGCGTGCATTCCTT
CCGTCATCACACACCTCTGTCCGTGTCCCTCGGGAAGAGCTTGTGGGCAT
GGAGTTGCCGCTCAAGTTCTTAGAGGTCGACAGCGAGAAGGGAAGACTTG
TTGTTTCCCATCGCCGTGCAATCGTCGAGAAACAGATGACTAACTTAGTG
GCTGGTGAAGTGGTTGAGGGTGTCGTCCGTGGTATCAAGCCGTACGGCGC
CTTTATCGACATTGGAGGCGTTTCTGGACTGCTACACGTTTCTCAGATTT
CCCATGATCATGTCGGTGATATCGGGGCCATTTTGCCGGATGGAGCTGTA
ATCAAATGCATGATTATCAATCAGGACAAGGAAAAGGGTCGAATTTCACT
CAGCACTAAGACTTTGGAACCTGAGCCCGGAGATATGCTTCGTGATTCCA
AAATGGTTTATGAAAAGGCCGAGGAAATGGCAGCTCGGTACCATAAGCGT
CTGGAAGAAGAACGAAAAGCTGCTGCCGATGTTGCCGATGATATTGTTTC
AACATTAGACATGGCTTCATTAGATGATGTTGGCGTTGACCCCGTCCCAG
CAAAAGCAGCATGA