Gcaud8728.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8728.t1
Unique NameGcaud8728.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Homology
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A2V3IRH2_9FLOR (60S ribosomal protein L34-A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRH2_9FLOR)

HSP 1 Score: 187 bits (474), Expect = 1.230e-58
Identity = 93/102 (91.18%), Postives = 99/102 (97.06%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPD RVTLR+SSPY+TRSNKF+K+RTPGGKLTIQY+ KLPSVPKCGDTGRPLFGVAVARPKEL+RMSKRRKSVSRSYGGVLS YAVRNRIIRAFLLEEQKIV
Sbjct:    1 MPDARVTLRKSSPYRTRSNKFRKLRTPGGKLTIQYVRKLPSVPKCGDTGRPLFGVAVARPKELQRMSKRRKSVSRSYGGVLSAYAVRNRIIRAFLLEEQKIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: R7Q857_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q857_CHOCR)

HSP 1 Score: 185 bits (469), Expect = 3.290e-58
Identity = 93/102 (91.18%), Postives = 96/102 (94.12%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPD RVTLRR SP+ TRSNKFKKVRTPGGKLTIQYL KLPS PKCGDTGRPLFGVAVARPKELKRMSKR+KSVSR YGGVLSGYAVRNRI+RAFLLEEQKIV
Sbjct:    1 MPDARVTLRRKSPFCTRSNKFKKVRTPGGKLTIQYLKKLPSTPKCGDTGRPLFGVAVARPKELKRMSKRQKSVSRCYGGVLSGYAVRNRIVRAFLLEEQKIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: M2Y4N1_GALSU (60S ribosomal protein L34e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4N1_GALSU)

HSP 1 Score: 132 bits (333), Expect = 1.490e-37
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPD RV LRR  PY TRSN+ +KVRTPGGKL +QY GK    P+CGDTG+PL G+   RP E  R+SKR+K V+R+YGG L   AVR+RI+RAFL+EEQK+V
Sbjct:    1 MPDKRVVLRRRHPYNTRSNRIRKVRTPGGKLVVQYPGKKGKQPRCGDTGKPLQGIPALRPIEYSRISKRQKKVNRAYGGNLCAQAVRDRILRAFLIEEQKLV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A7S1TDA2_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDA2_9RHOD)

HSP 1 Score: 132 bits (331), Expect = 2.830e-37
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            M D+RVT RR SPY T+SN+ KK++TPGGKLT+QYL K  S P+CG+TG  L GVA+ RPK+  RMSK +KSVSR+YGG L   AVR+RI+RAFL+EEQ+IV
Sbjct:    1 MADSRVTRRRRSPYATKSNRIKKIKTPGGKLTVQYLKKKASRPRCGETGVILQGVAMGRPKQYMRMSKPKKSVSRAYGGNLCARAVRDRIVRAFLIEEQRIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: M1V626_CYAM1 (60S ribosomal protein L34 n=2 Tax=cellular organisms TaxID=131567 RepID=M1V626_CYAM1)

HSP 1 Score: 129 bits (325), Expect = 5.840e-36
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPDTR+TLR+  PY T+SNK +KV+TPGG L + YL K    P+CGDTG  L GV V RP+EL R+SK +KSVSR+YGGVL G AVR+RI RAFL+EE + V
Sbjct:    1 MPDTRITLRKRRPYATKSNKIRKVKTPGGILRVHYLKKRTKAPRCGDTGTKLNGVPVRRPRELARLSKPKKSVSRAYGGVLCGNAVRDRIHRAFLIEESRAV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A7J7ILW8_9RHOD (60S ribosomal protein L34 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILW8_9RHOD)

HSP 1 Score: 128 bits (321), Expect = 2.360e-35
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPD R+TLR+  PY TRSNK +KV+TPGG LT+ YL K    P+CGDTG  L G+ V RP+E  R+SK +KSVSR+YGG L G AVR+RI RAFL+EE KIV
Sbjct:    1 MPDKRITLRKRKPYATRSNKIRKVKTPGGVLTVHYLKKQAKPPRCGDTGVKLNGMPVRRPREYARLSKPKKSVSRAYGGALCGAAVRDRIQRAFLIEEAKIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A1X6NTK0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTK0_PORUM)

HSP 1 Score: 126 bits (317), Expect = 4.020e-35
Identity = 62/102 (60.78%), Postives = 79/102 (77.45%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            MPD RVTLRR +PY T+SN+F+KV+TPGGKL +QY+ K  +  +CGDT   L G+++ RPK+  RMSK +K+V+R YGG L   AVR RIIRAFL+EEQKIV
Sbjct:    1 MPDARVTLRRRNPYATKSNRFRKVKTPGGKLVVQYIKKQGTPTRCGDTHTILNGISIGRPKDYMRMSKPKKTVTRVYGGNLCAKAVRERIIRAFLIEEQKIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A7S0BMA9_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMA9_9RHOD)

HSP 1 Score: 123 bits (308), Expect = 9.080e-34
Identity = 61/102 (59.80%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            M D+RV LRR   Y+TRSN+ +KV+TPGGKL  QY+ K   +P+CGDTG  L G+A  R KEL ++SK +KSV+R YGG LS  AVR RIIRAFL+EE++IV
Sbjct:    1 MGDSRVVLRRRGTYRTRSNRIRKVKTPGGKLVAQYIKKTGKIPRCGDTGHLLNGIAAVRSKELAKLSKPKKSVTRVYGGCLSAGAVRTRIIRAFLIEEKQIV 102          
BLAST of Gcaud8728.t1 vs. uniprot
Match: A0A0U2TGL7_ACAPC (60S ribosomal protein L34 n=2 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2TGL7_ACAPC)

HSP 1 Score: 121 bits (304), Expect = 3.570e-33
Identity = 65/98 (66.33%), Postives = 74/98 (75.51%), Query Frame = 0
Query:    5 RVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            R+T RR   Y TRSN+ KKVRTPGGKL  QYL K PSVPKC  TG  + GV  A  +E  RMSKR K+VSRSYGGVLS  AVR++I+RAFL+EEQKIV
Sbjct:    4 RITYRRRLSYNTRSNRVKKVRTPGGKLVFQYLKKRPSVPKCPVTGLKIKGVKPATNQEKTRMSKRLKTVSRSYGGVLSHQAVRDKIVRAFLIEEQKIV 101          
BLAST of Gcaud8728.t1 vs. uniprot
Match: C5DBP0_LACTC (KLTH0A04202p n=7 Tax=Lachancea TaxID=300275 RepID=C5DBP0_LACTC)

HSP 1 Score: 120 bits (300), Expect = 2.000e-32
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    5 RVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGRPLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQKIV 102
            RVT RR +PY TRSNK K V+TPGG L  Q+  KL + PKCGDTG PL GV+  RP+E   +SK  K+VSR+YGGVL   AV+ RI+RAFL+EEQKIV
Sbjct:    4 RVTFRRRNPYNTRSNKIKVVKTPGGVLRAQHTKKLATRPKCGDTGVPLQGVSTMRPREYATVSKTHKTVSRAYGGVLCANAVKERIVRAFLIEEQKIV 101          
The following BLAST results are available for this feature:
BLAST of Gcaud8728.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRH2_9FLOR1.230e-5891.1860S ribosomal protein L34-A n=1 Tax=Gracilariopsis... [more]
R7Q857_CHOCR3.290e-5891.18Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2Y4N1_GALSU1.490e-3762.7560S ribosomal protein L34e n=1 Tax=Galdieria sulph... [more]
A0A7S1TDA2_9RHOD2.830e-3764.71Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M1V626_CYAM15.840e-3662.7560S ribosomal protein L34 n=2 Tax=cellular organis... [more]
A0A7J7ILW8_9RHOD2.360e-3562.7560S ribosomal protein L34 n=1 Tax=Cyanidiococcus y... [more]
A0A1X6NTK0_PORUM4.020e-3560.78Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0BMA9_9RHOD9.080e-3459.80Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A0U2TGL7_ACAPC3.570e-3366.3360S ribosomal protein L34 n=2 Tax=Acartia pacifica... [more]
C5DBP0_LACTC2.000e-3262.24KLTH0A04202p n=7 Tax=Lachancea TaxID=300275 RepID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 14..27
score: 53.06
coord: 65..87
score: 42.86
coord: 27..44
score: 42.06
coord: 45..55
score: 48.05
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 4..95
e-value: 9.9E-34
score: 115.5
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..115
NoneNo IPR availableGENE3D6.20.370.70coord: 4..37
e-value: 6.2E-13
score: 50.2
NoneNo IPR availableGENE3D6.20.340.10coord: 38..116
e-value: 3.7E-30
score: 105.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..138
NoneNo IPR availablePANTHERPTHR10759:SF0FI02850P-RELATEDcoord: 1..115
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 16..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_61_length_58397_cov_4.831458contigNODE_61_length_58397_cov_4.831458:44234..44957 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1Gcaud8728.t1Gracilaria caudata M_176_S67 malemRNANODE_61_length_58397_cov_4.831458 44234..44957 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKAQKAKQAAAAAASTTKKKKSSSKSKGKK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008195Ribosomal_L34Ae
IPR018065Ribosomal_L34e_CS