Gcaud8728.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8728.t1
Unique NameGcaud8728.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_61_length_58397_cov_4.831458contigNODE_61_length_58397_cov_4.831458:44234..44957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707418.1
Preferred nameRPL34
PFAMsRibosomal_L34e
Max annot lvl2759|Eukaryota
KEGG koko:K02915
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0017022,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue4.27e-37
EggNOG OGsCOG2174@1|root,KOG1790@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8728Gcaud8728Gracilaria caudata M_176_S67 malegeneNODE_61_length_58397_cov_4.831458 44234..44957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1Gcaud8728.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_61_length_58397_cov_4.831458 44234..44957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1.stop1Gcaud8728.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_61_length_58397_cov_4.831458 44234..44236 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1.CDS1Gcaud8728.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 44234..44384 -
Gcaud8728.t1.CDS2Gcaud8728.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 44606..44803 -
Gcaud8728.t1.CDS3Gcaud8728.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 44890..44957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1.exon1Gcaud8728.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 44234..44384 -
Gcaud8728.t1.exon2Gcaud8728.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 44606..44803 -
Gcaud8728.t1.exon3Gcaud8728.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 44890..44957 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1.intron1Gcaud8728.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_61_length_58397_cov_4.831458 44385..44605 -
Gcaud8728.t1.intron2Gcaud8728.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_61_length_58397_cov_4.831458 44804..44889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8728.t1.start1Gcaud8728.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_61_length_58397_cov_4.831458 44955..44957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=139bp
MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKAQKAKQAAAAAASTTKKKKSSSKSKGKK*
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spliced messenger RNA

>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:44234..44957- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGACACGCGCGTTACTCTACGGAGGAGTAGTCCGTACAAGACTAG
GAGTAACAAGTTCAAGAAAGTTCGCACCCCTGGGGGAAAGCTTACGATCC
AGTACCTCGGGAAGCTCCCTAGCGTTCCGAAATGCGGTGATACCGGCCGA
CCTCTGTTCGGAGTTGCCGTCGCTCGACCGAAAGAGCTGAAGCGTATGTC
CAAGCGAAGGAAGTCCGTGTCCCGATCCTACGGAGGCGTTCTCTCTGGTT
ATGCAGTCCGTAACAGGATTATTCGAGCATTCCTTCTTGAAGAACAGAAG
ATTGTGAAGAAGGTTATTAAGCAACAGAAGGCACAGAAGGCGAAGCAAGC
TGCTGCCGCAGCTGCTTCTACTACTAAGAAGAAGAAGAGCTCCAGTAAGT
CTAAGGGAAAGAAATAA
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protein sequence of Gcaud8728.t1

>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MPDTRVTLRRSSPYKTRSNKFKKVRTPGGKLTIQYLGKLPSVPKCGDTGR
PLFGVAVARPKELKRMSKRRKSVSRSYGGVLSGYAVRNRIIRAFLLEEQK
IVKKVIKQQKAQKAKQAAAAAASTTKKKKSSSKSKGKK*
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mRNA from alignment at NODE_61_length_58397_cov_4.831458:44234..44957-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=724bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:44234..44957- (Gracilaria caudata M_176_S67 male)
ATGCCGGACACGCGCGTTACTCTACGGAGGAGTAGTCCGTACAAGACTAG
GAGTAACAAGTTCAAGAAGTAAGTCATTTGCGCCCCGTTTTCTGTTGCAT
CACACTCGCACTCGCACGCGCACATCTACTAACGCTGTCGGTTTCGATCC
GCAGAGTTCGCACCCCTGGGGGAAAGCTTACGATCCAGTACCTCGGGAAG
CTCCCTAGCGTTCCGAAATGCGGTGATACCGGCCGACCTCTGTTCGGAGT
TGCCGTCGCTCGACCGAAAGAGCTGAAGCGTATGTCCAAGCGAAGGAAGT
CCGTGTCCCGATCCTACGGAGGCGTTCTCTCTGGTTATGCAGTCCGTAAC
AGGTATGTGATCCTAGTTTTTGTATTCTGCTGCAGATGAGGATATGCGAT
CGCTCTTTACGCGAGCACGGATTCCCTTTTACGGATGGGTCACCCAAATG
AGTAACATTTACGCCTCCGTCGGATGCACTTTAGCACGTCATGATTTTGG
CGCTTCTTCCCATTCCGGACACAACTGACATTCCCGCTCCCTAATATCTT
ATTATTCGCATTGTGGCTTGTAGGATTATTCGAGCATTCCTTCTTGAAGA
ACAGAAGATTGTGAAGAAGGTTATTAAGCAACAGAAGGCACAGAAGGCGA
AGCAAGCTGCTGCCGCAGCTGCTTCTACTACTAAGAAGAAGAAGAGCTCC
AGTAAGTCTAAGGGAAAGAAATAA
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Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:44234..44957-

>Gcaud8728.t1 ID=Gcaud8728.t1|Name=Gcaud8728.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=417bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:44234..44957- (Gracilaria caudata M_176_S67 male)
ATGCCGGACACGCGCGTTACTCTACGGAGGAGTAGTCCGTACAAGACTAG
GAGTAACAAGTTCAAGAAAGTTCGCACCCCTGGGGGAAAGCTTACGATCC
AGTACCTCGGGAAGCTCCCTAGCGTTCCGAAATGCGGTGATACCGGCCGA
CCTCTGTTCGGAGTTGCCGTCGCTCGACCGAAAGAGCTGAAGCGTATGTC
CAAGCGAAGGAAGTCCGTGTCCCGATCCTACGGAGGCGTTCTCTCTGGTT
ATGCAGTCCGTAACAGGATTATTCGAGCATTCCTTCTTGAAGAACAGAAG
ATTGTGAAGAAGGTTATTAAGCAACAGAAGGCACAGAAGGCGAAGCAAGC
TGCTGCCGCAGCTGCTTCTACTACTAAGAAGAAGAAGAGCTCCAGTAAGT
CTAAGGGAAAGAAATAA
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