Gcaud8720.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8720.t1
Unique Name	Gcaud8720.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:24997..26481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703600.1
Preferred name	POLR1A
PFAMs	RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K02999,ko:K03018
KEGG Reaction	R00435,R00441,R00442,R00443
KEGG Pathway	ko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG Module	M00181,M00182
GOs	GO:0000428,GO:0001054,GO:0003674,GO:0003682,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009506,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0050789,GO:0055029,GO:0055044,GO:0060255,GO:0060341,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1900180,GO:1900181,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903827,GO:1903828,GO:1904749,GO:1904750,GO:1990234,GO:1990841
Evalue	3.24e-08
EggNOG OGs	COG0086@1\|root,KOG0262@2759\|Eukaryota
EC	2.7.7.6
Description	negative regulation of protein localization to nucleolus
COG category	K
BRITE	br01611,ko00000,ko00001,ko00002,ko01000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8720	Gcaud8720	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 24997..26481 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8720.t1.start1	Gcaud8720.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 24997..24999 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8720.t1.CDS1	Gcaud8720.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 24997..26481 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8720.t1.exon1	Gcaud8720.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 24997..26481 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8720.t1.stop1	Gcaud8720.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 26479..26481 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8720.t1	Gcaud8720.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 24997..26481 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+

mRNA sequence

>Gcaud8720.t1 ID=Gcaud8720.t1|Name=Gcaud8720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=495bp
MWRRFSTAFSPEERLRELKKHILRLYKHIHPDRLGRFPQERKVNEHSFKV
LQSAIDRHFDRIQARAEMPPGAPTTVQKLIFYAHEVKNSGSFGTNKLTKA
VISLHESRLGNALASLFSELGLEPPPKSILPGTGIYNDGVHFSSLRELVK
YARRVELEYLQKKSQETGSVAQRASDDEVLMTRLALQRSRGFTIVLGTGL
PVKLERLLRRLSRTVRKLQEVDLRTLVIELDGGFHVEVNTNGYFPFVSLG
ACATEETWIETLRSEEIRSAAKASQSLVSALHDLETELARALGVRLVMHD
IKLVDGADWESKSDASKAKGKNLEALLDGTVSLEVYHNLMQSFIELIEKE
GVPMFVDGARSLALMFTDGHGFQMDIKQGVLRVGINDGQCKIAETLRAHG
QYVSREHEKERSNAEDEQKRLSNVQHALRIPSLRRLKEVSDQDWEMALTE
LRADASRLRAVLDGTPVVVGMQARLLTDTGEIEIPFDYHQWLPI*

spliced messenger RNA

>Gcaud8720.t1 ID=Gcaud8720.t1|Name=Gcaud8720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCGTCGATTTTCAACGGCCTTCAGTCCGGAAGAGAGGCTACGGGA
GCTTAAGAAGCATATCCTACGGCTTTACAAACATATTCATCCTGATCGAT
TAGGTCGTTTTCCCCAGGAAAGGAAGGTAAATGAACATTCGTTTAAGGTC
TTGCAATCGGCAATTGACAGGCACTTCGACAGAATCCAAGCTCGTGCCGA
AATGCCTCCAGGAGCACCTACAACGGTGCAGAAATTGATCTTTTACGCAC
ATGAAGTCAAGAACAGTGGTTCTTTTGGTACAAACAAGTTGACTAAAGCA
GTCATCAGTTTACACGAATCAAGACTTGGAAACGCTTTGGCTTCTCTTTT
TAGTGAGTTAGGGTTAGAACCTCCTCCAAAGAGTATTCTGCCAGGAACTG
GGATTTATAATGACGGTGTGCACTTCTCGTCACTGAGAGAGCTTGTGAAA
TATGCTCGACGAGTAGAACTGGAATATCTTCAAAAGAAAAGTCAAGAGAC
GGGTTCTGTTGCCCAAAGAGCGAGCGATGATGAGGTTCTAATGACCCGAC
TTGCGTTACAAAGGTCGAGAGGGTTTACAATTGTTCTGGGCACAGGGTTA
CCCGTCAAGCTGGAAAGATTGCTCAGGCGACTCAGTCGGACTGTAAGAAA
ACTGCAGGAGGTTGATTTACGCACTTTGGTGATCGAGCTTGATGGGGGGT
TTCATGTGGAGGTCAATACGAATGGATATTTTCCTTTTGTTAGCTTGGGC
GCATGTGCTACCGAGGAGACATGGATAGAGACCCTCAGATCGGAGGAAAT
ACGCTCGGCGGCCAAAGCTAGCCAAAGCTTGGTCTCTGCGTTGCATGACT
TGGAAACTGAACTAGCTCGAGCCCTTGGGGTTCGCCTTGTAATGCACGAC
ATTAAACTGGTGGATGGTGCTGATTGGGAATCGAAAAGTGATGCGAGTAA
AGCGAAAGGCAAGAATTTGGAAGCTCTTCTTGACGGGACTGTATCCCTTG
AAGTATATCATAACTTAATGCAGTCGTTTATTGAGTTAATTGAAAAGGAG
GGTGTTCCAATGTTTGTCGACGGAGCTCGCTCTCTCGCACTGATGTTCAC
CGACGGACATGGTTTTCAGATGGATATCAAACAAGGTGTCCTCCGAGTAG
GAATCAACGATGGCCAGTGCAAGATTGCGGAAACGTTGCGAGCGCACGGT
CAGTATGTCAGTCGAGAACACGAAAAGGAAAGGTCAAACGCAGAAGACGA
ACAGAAGAGGCTATCCAATGTCCAACATGCGCTGAGAATCCCAAGCCTGA
GAAGGCTTAAAGAAGTCTCGGATCAAGACTGGGAAATGGCTCTGACAGAA
CTGCGAGCTGATGCAAGCAGACTTCGGGCCGTACTGGACGGTACTCCTGT
GGTGGTTGGAATGCAAGCTCGATTGTTGACGGATACGGGGGAGATAGAAA
TACCTTTCGATTATCACCAGTGGCTTCCTATCTGA

protein sequence of Gcaud8720.t1

>Gcaud8720.t1 ID=Gcaud8720.t1|Name=Gcaud8720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=495bp
MWRRFSTAFSPEERLRELKKHILRLYKHIHPDRLGRFPQERKVNEHSFKV
LQSAIDRHFDRIQARAEMPPGAPTTVQKLIFYAHEVKNSGSFGTNKLTKA
VISLHESRLGNALASLFSELGLEPPPKSILPGTGIYNDGVHFSSLRELVK
YARRVELEYLQKKSQETGSVAQRASDDEVLMTRLALQRSRGFTIVLGTGL
PVKLERLLRRLSRTVRKLQEVDLRTLVIELDGGFHVEVNTNGYFPFVSLG
ACATEETWIETLRSEEIRSAAKASQSLVSALHDLETELARALGVRLVMHD
IKLVDGADWESKSDASKAKGKNLEALLDGTVSLEVYHNLMQSFIELIEKE
GVPMFVDGARSLALMFTDGHGFQMDIKQGVLRVGINDGQCKIAETLRAHG
QYVSREHEKERSNAEDEQKRLSNVQHALRIPSLRRLKEVSDQDWEMALTE
LRADASRLRAVLDGTPVVVGMQARLLTDTGEIEIPFDYHQWLPI*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8720.t1 ID=Gcaud8720.t1|Name=Gcaud8720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1485bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+ (Gracilaria caudata M_176_S67 male)
ATGTGGCGTCGATTTTCAACGGCCTTCAGTCCGGAAGAGAGGCTACGGGA
GCTTAAGAAGCATATCCTACGGCTTTACAAACATATTCATCCTGATCGAT
TAGGTCGTTTTCCCCAGGAAAGGAAGGTAAATGAACATTCGTTTAAGGTC
TTGCAATCGGCAATTGACAGGCACTTCGACAGAATCCAAGCTCGTGCCGA
AATGCCTCCAGGAGCACCTACAACGGTGCAGAAATTGATCTTTTACGCAC
ATGAAGTCAAGAACAGTGGTTCTTTTGGTACAAACAAGTTGACTAAAGCA
GTCATCAGTTTACACGAATCAAGACTTGGAAACGCTTTGGCTTCTCTTTT
TAGTGAGTTAGGGTTAGAACCTCCTCCAAAGAGTATTCTGCCAGGAACTG
GGATTTATAATGACGGTGTGCACTTCTCGTCACTGAGAGAGCTTGTGAAA
TATGCTCGACGAGTAGAACTGGAATATCTTCAAAAGAAAAGTCAAGAGAC
GGGTTCTGTTGCCCAAAGAGCGAGCGATGATGAGGTTCTAATGACCCGAC
TTGCGTTACAAAGGTCGAGAGGGTTTACAATTGTTCTGGGCACAGGGTTA
CCCGTCAAGCTGGAAAGATTGCTCAGGCGACTCAGTCGGACTGTAAGAAA
ACTGCAGGAGGTTGATTTACGCACTTTGGTGATCGAGCTTGATGGGGGGT
TTCATGTGGAGGTCAATACGAATGGATATTTTCCTTTTGTTAGCTTGGGC
GCATGTGCTACCGAGGAGACATGGATAGAGACCCTCAGATCGGAGGAAAT
ACGCTCGGCGGCCAAAGCTAGCCAAAGCTTGGTCTCTGCGTTGCATGACT
TGGAAACTGAACTAGCTCGAGCCCTTGGGGTTCGCCTTGTAATGCACGAC
ATTAAACTGGTGGATGGTGCTGATTGGGAATCGAAAAGTGATGCGAGTAA
AGCGAAAGGCAAGAATTTGGAAGCTCTTCTTGACGGGACTGTATCCCTTG
AAGTATATCATAACTTAATGCAGTCGTTTATTGAGTTAATTGAAAAGGAG
GGTGTTCCAATGTTTGTCGACGGAGCTCGCTCTCTCGCACTGATGTTCAC
CGACGGACATGGTTTTCAGATGGATATCAAACAAGGTGTCCTCCGAGTAG
GAATCAACGATGGCCAGTGCAAGATTGCGGAAACGTTGCGAGCGCACGGT
CAGTATGTCAGTCGAGAACACGAAAAGGAAAGGTCAAACGCAGAAGACGA
ACAGAAGAGGCTATCCAATGTCCAACATGCGCTGAGAATCCCAAGCCTGA
GAAGGCTTAAAGAAGTCTCGGATCAAGACTGGGAAATGGCTCTGACAGAA
CTGCGAGCTGATGCAAGCAGACTTCGGGCCGTACTGGACGGTACTCCTGT
GGTGGTTGGAATGCAAGCTCGATTGTTGACGGATACGGGGGAGATAGAAA
TACCTTTCGATTATCACCAGTGGCTTCCTATCTGA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+

>Gcaud8720.t1 ID=Gcaud8720.t1|Name=Gcaud8720.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1485bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:24997..26481+ (Gracilaria caudata M_176_S67 male)
ATGTGGCGTCGATTTTCAACGGCCTTCAGTCCGGAAGAGAGGCTACGGGA
GCTTAAGAAGCATATCCTACGGCTTTACAAACATATTCATCCTGATCGAT
TAGGTCGTTTTCCCCAGGAAAGGAAGGTAAATGAACATTCGTTTAAGGTC
TTGCAATCGGCAATTGACAGGCACTTCGACAGAATCCAAGCTCGTGCCGA
AATGCCTCCAGGAGCACCTACAACGGTGCAGAAATTGATCTTTTACGCAC
ATGAAGTCAAGAACAGTGGTTCTTTTGGTACAAACAAGTTGACTAAAGCA
GTCATCAGTTTACACGAATCAAGACTTGGAAACGCTTTGGCTTCTCTTTT
TAGTGAGTTAGGGTTAGAACCTCCTCCAAAGAGTATTCTGCCAGGAACTG
GGATTTATAATGACGGTGTGCACTTCTCGTCACTGAGAGAGCTTGTGAAA
TATGCTCGACGAGTAGAACTGGAATATCTTCAAAAGAAAAGTCAAGAGAC
GGGTTCTGTTGCCCAAAGAGCGAGCGATGATGAGGTTCTAATGACCCGAC
TTGCGTTACAAAGGTCGAGAGGGTTTACAATTGTTCTGGGCACAGGGTTA
CCCGTCAAGCTGGAAAGATTGCTCAGGCGACTCAGTCGGACTGTAAGAAA
ACTGCAGGAGGTTGATTTACGCACTTTGGTGATCGAGCTTGATGGGGGGT
TTCATGTGGAGGTCAATACGAATGGATATTTTCCTTTTGTTAGCTTGGGC
GCATGTGCTACCGAGGAGACATGGATAGAGACCCTCAGATCGGAGGAAAT
ACGCTCGGCGGCCAAAGCTAGCCAAAGCTTGGTCTCTGCGTTGCATGACT
TGGAAACTGAACTAGCTCGAGCCCTTGGGGTTCGCCTTGTAATGCACGAC
ATTAAACTGGTGGATGGTGCTGATTGGGAATCGAAAAGTGATGCGAGTAA
AGCGAAAGGCAAGAATTTGGAAGCTCTTCTTGACGGGACTGTATCCCTTG
AAGTATATCATAACTTAATGCAGTCGTTTATTGAGTTAATTGAAAAGGAG
GGTGTTCCAATGTTTGTCGACGGAGCTCGCTCTCTCGCACTGATGTTCAC
CGACGGACATGGTTTTCAGATGGATATCAAACAAGGTGTCCTCCGAGTAG
GAATCAACGATGGCCAGTGCAAGATTGCGGAAACGTTGCGAGCGCACGGT
CAGTATGTCAGTCGAGAACACGAAAAGGAAAGGTCAAACGCAGAAGACGA
ACAGAAGAGGCTATCCAATGTCCAACATGCGCTGAGAATCCCAAGCCTGA
GAAGGCTTAAAGAAGTCTCGGATCAAGACTGGGAAATGGCTCTGACAGAA
CTGCGAGCTGATGCAAGCAGACTTCGGGCCGTACTGGACGGTACTCCTGT
GGTGGTTGGAATGCAAGCTCGATTGTTGACGGATACGGGGGAGATAGAAA
TACCTTTCGATTATCACCAGTGGCTTCCTATCTGA