Gcaud8729.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8729.t1
Unique NameGcaud8729.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length305
Homology
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A2V3IRF4_9FLOR (UBC core domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRF4_9FLOR)

HSP 1 Score: 380 bits (976), Expect = 5.380e-129
Identity = 201/360 (55.83%), Postives = 235/360 (65.28%), Query Frame = 0
Query:    1 MDTHALEALRAWKPGEGTANISSCQSKPPVVVYDGSHGSSFTARALFEFPDGGRFYLLLSGSK--------------------------------------------------DNVLSHASRIYDNNNXXXXXXXXXXAKAATAALRVE---PDFLST---ANSAKRKRPPPCAAKDPIFAPTRIATTTLMKQLSILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWHVHDPNRTKSKKQRS 304
            MD  ALEALR+WK  +   ++S C SKPPVV YDG  G+ FTARA FEFPDGGRFYLLLSGS                                                     VL +A R+YDN             K    +  V    PD L++   AN AKRKRPPP   KDP+FAP+R+ATTTLMKQ+SILQ MDTRRDGFTAQP ADDLY+W VMLYFDN+S C++ +D+K++P+  G++LELRFP  YPN PPF+RVVSPY+ GGHV  HGGICMELLTTSGWAPVYSLDLVCIQIRALLI G+AR  R  H+SH ++YTYEGAL+DHR IVR HRW+V D N  K+KKQRS
Sbjct:    1 MDQQALEALRSWKACDDIISVSPCASKPPVVAYDGK-GAVFTARASFEFPDGGRFYLLLSGSNATSPNDDAEPLTAMIEDDLGLPDGFLIDINTFLFSDFSESARHLTPAQVVHQVLFNAGRVYDNIVGIAATARKYKPKPRPPSQAVHASIPDQLTSDNNANVAKRKRPPPIPIKDPVFAPSRLATTTLMKQISILQAMDTRRDGFTAQPTADDLYQWTVMLYFDNISGCDLVDDIKNIPECQGVELELRFPSGYPNAPPFIRVVSPYIFGGHVGPHGGICMELLTTSGWAPVYSLDLVCIQIRALLIQGRARAFRS-HQSHVKSYTYEGALNDHRRIVRTHRWNVPDSNPNKTKKQRS 358          
BLAST of Gcaud8729.t1 vs. uniprot
Match: R7QDU1_CHOCR (UBC core domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDU1_CHOCR)

HSP 1 Score: 208 bits (530), Expect = 9.890e-63
Identity = 102/191 (53.40%), Postives = 133/191 (69.63%), Query Frame = 0
Query:  111 RKRPPPCAAKD-PIFAPTRIATTTLMKQLSILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWHVHDPNRTKSK 300
            RKRP      + P F  +R+AT TLMKQL++L+ MDTR+DGF A+PV +DLY+WNV LYFD+V    IA DL  +   D ++LE  FP DYP+ PP VRV +PYV+ GHV   GG+CMELLT SGWAPV S+D+VCIQIRA+LI G AR+  ++ +S    YT+EGAL D   +V+ HRW+   P + + K
Sbjct:   80 RKRPAESMQYEAPRFGHSRLATATLMKQLTLLKDMDTRKDGFIAEPVEEDLYKWNVHLYFDDVQGSRIASDLAKIAKRDTVKLEFTFPADYPHAPPVVRVAAPYVSAGHVLHRGGLCMELLTASGWAPVNSIDVVCIQIRAMLIQGHARIDPKM-QSKITKYTFEGALKDLHLVVKTHRWNAGTPPQLRKK 269          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A1Y3BIP5_EURMA (Ubiquitin-conjugating enzyme E2 Q2-like protein n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BIP5_EURMA)

HSP 1 Score: 114 bits (286), Expect = 3.470e-27
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  130 ATTTLMKQLSILQGMDT-RRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  +   D+ +R  F    V D+LY WNV L   + SD ++  DL+ L D +G   I L + F  +YP  PPF+RV SP+++GG+V   G +CMELLT  GW+  YS++ + +QI A L+ GKAR+       H   Y+   A    R++V +H
Sbjct:   45 ATDRLMKELRDIYRCDSFKRKVFEVHLVNDNLYEWNVHLKKVD-SDSQLYSDLQALKDKEGHDYITLNVTFKENYPFEPPFIRVASPFISGGYVLGGGALCMELLTKQGWSSAYSMEAIILQISATLVKGKARI---TFNGHRGQYSLARAQQSFRSLVSIH 202          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A0M0JRC4_9EUKA (Ubiquitin-conjugating enzyme e2q-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JRC4_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 5.390e-26
Identity = 69/170 (40.59%), Postives = 96/170 (56.47%), Query Frame = 0
Query:  130 ATTTLMKQLSILQGMDTRRDG------FTAQPVAD-DLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDYPNVPPFVRVVSPYVTG--GHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWH 290
            A   LMK+L+ L  +D +  G      F  +PV + DL+ W + LY  +  D  IA DL+     + + L + FP +YPN PPFV +V P +    G+V S GGICMELLT SGW+P  S+D +   +RA+L+ G AR+H     +    YTYEGA  D  +I+ VH  H
Sbjct:  156 ALKRLMKELTQLTALDRQPGGCRALHAFECEPVDESDLFLWELRLYDFSAED-PIAVDLRRRR-LEHMTLRMHFPPEYPNAPPFVYMVRPRLKEHTGYVLSGGGICMELLTPSGWSPATSIDALVHSVRAMLMAGNARLHSTEQSTKESDYTYEGARRDFEHILAVHGKH 323          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A6P6YLZ7_DERPT (ubiquitin-conjugating enzyme E2 Q2-like n=2 Tax=Dermatophagoides TaxID=6953 RepID=A0A6P6YLZ7_DERPT)

HSP 1 Score: 114 bits (286), Expect = 5.450e-25
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  130 ATTTLMKQLSILQGMDT-RRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  +   D+ +R  F    V D+LY WNV L   +  D ++  DL+ L D +G   I L + F  +YP  PPF+RV SP+++GG+V   G +CMELLT  GW+  YS++ + +QI A L+ GKAR+   I   H   Y+   A    R++V +H
Sbjct:  376 ATDRLMKELRDIYRCDSFKRKVFEVHLVNDNLYEWNVHLKKVD-PDSQLHSDLQALKDKEGHDHITLNVTFKENYPFEPPFIRVASPFISGGYVLGGGALCMELLTKQGWSSAYSMEAIILQISATLVKGKARI---IFNGHRGQYSLARAQQSFRSLVSIH 533          
BLAST of Gcaud8729.t1 vs. uniprot
Match: G7MDU5_MACMU (UBC core domain-containing protein (Fragment) n=1 Tax=Macaca mulatta TaxID=9544 RepID=G7MDU5_MACMU)

HSP 1 Score: 111 bits (277), Expect = 1.050e-24
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 0
Query:  130 ATTTLMKQL-SILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  I +    +   +  + V D LY WNV L  D   D  +  DL+ L + +G   I L   F  ++P  PPFVRVVSP ++GG+V   G ICMELLT  GW+  YS++ V +QI A L+ GKARV    +KS    Y+   A   ++++V++H
Sbjct:  167 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLVD--QDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQ---YSLTRAQQSYKSLVQIH 323          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A8C0G703_CHEAB (Ubiquitin conjugating enzyme E2 Q1 n=3 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0G703_CHEAB)

HSP 1 Score: 107 bits (268), Expect = 2.330e-24
Identity = 63/162 (38.89%), Postives = 93/162 (57.41%), Query Frame = 0
Query:  130 ATTTLMKQL-SILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQ---LELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  I +    +   +  + V+D LY WNV L   +  D  +  DL+ L + +GI    L   F  ++P  PPFVRVVSP ++GG+V   G ICMELLT  GW+  YS++ V +QI A L+ GKARV    +K+    Y+   A   ++++V++H
Sbjct:   47 ATDRLMKELRDIYRSPSFKGGNYAVELVSDSLYDWNVKLLKVD-EDSALHNDLQILKEKEGIDFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKNQ---YSLTRAQQSYKSLVQIH 204          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A7J8BJA4_ROUAE (Ubiquitin conjugating enzyme E2 Q1 n=4 Tax=Laurasiatheria TaxID=314145 RepID=A0A7J8BJA4_ROUAE)

HSP 1 Score: 108 bits (269), Expect = 3.070e-24
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 0
Query:  130 ATTTLMKQL-SILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  I +    +   +  + V D LY WNV L   +  D  +  DL+ L + +G   I L   F  ++P  PPFVRVVSP ++GG+V   G ICMELLT  GW+  YS++ V +QI A L+ GKARV    +KS    Y+   A   ++++V++H
Sbjct:   83 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVD-QDSALHSDLQTLKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQ---YSLTRAQQSYKSLVQIH 240          
BLAST of Gcaud8729.t1 vs. uniprot
Match: A0A2K5J0K4_COLAP (Ubiquitin conjugating enzyme E2 Q1 n=17 Tax=Amniota TaxID=32524 RepID=A0A2K5J0K4_COLAP)

HSP 1 Score: 107 bits (268), Expect = 4.190e-24
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 0
Query:  130 ATTTLMKQL-SILQGMDTRRDGFTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  I +    +   +  + V D LY WNV L   +  D  +  DL+ L + +G   I L   F  ++P  PPFVRVVSP ++GG+V   G ICMELLT  GW+  YS++ V +QI A L+ GKARV    +KS    Y+   A   ++++V++H
Sbjct:   82 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVD-QDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQ---YSLTRAQQSYKSLVQIH 239          
BLAST of Gcaud8729.t1 vs. uniprot
Match: UPI00196676EA (ubiquitin-conjugating enzyme E2 Q1 n=2 Tax=Polypteridae TaxID=8289 RepID=UPI00196676EA)

HSP 1 Score: 110 bits (274), Expect = 4.660e-24
Identity = 64/162 (39.51%), Postives = 96/162 (59.26%), Query Frame = 0
Query:  130 ATTTLMKQLSILQGMDTRRDG-FTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDG---IQLELRFPGDYPNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRALLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVH 287
            AT  LMK+L  +   ++ + G +T + V+D LY WNV L   +  D  +  DL+ L + +G   I L   F  ++P  PPFVRVVSP ++GG+V   G ICMELLT  GW+  YS++ + +QI A L+ GKARV    +KS    Y+   A   ++++V++H
Sbjct:  198 ATDRLMKELRDIYKSESFKAGNYTVELVSDSLYDWNVKLLKVD-QDSALHTDLQILKEKEGTDFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESIIMQINATLVKGKARVQFGANKSQ---YSLTRAQQSYKSLVQIH 355          
The following BLAST results are available for this feature:
BLAST of Gcaud8729.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRF4_9FLOR5.380e-12955.83UBC core domain-containing protein n=1 Tax=Gracila... [more]
R7QDU1_CHOCR9.890e-6353.40UBC core domain-containing protein n=1 Tax=Chondru... [more]
A0A1Y3BIP5_EURMA3.470e-2739.51Ubiquitin-conjugating enzyme E2 Q2-like protein n=... [more]
A0A0M0JRC4_9EUKA5.390e-2640.59Ubiquitin-conjugating enzyme e2q-like protein n=1 ... [more]
A0A6P6YLZ7_DERPT5.450e-2539.51ubiquitin-conjugating enzyme E2 Q2-like n=2 Tax=De... [more]
G7MDU5_MACMU1.050e-2440.12UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A8C0G703_CHEAB2.330e-2438.89Ubiquitin conjugating enzyme E2 Q1 n=3 Tax=Chelono... [more]
A0A7J8BJA4_ROUAE3.070e-2439.51Ubiquitin conjugating enzyme E2 Q1 n=4 Tax=Laurasi... [more]
A0A2K5J0K4_COLAP4.190e-2439.51Ubiquitin conjugating enzyme E2 Q1 n=17 Tax=Amniot... [more]
UPI00196676EA4.660e-2439.51ubiquitin-conjugating enzyme E2 Q1 n=2 Tax=Polypte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 132..296
e-value: 6.5E-4
score: 19.3
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 140..293
NoneNo IPR availablePANTHERPTHR24068:SF350UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEINcoord: 140..293
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 126..290
e-value: 1.0E-32
score: 115.1
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 129..259
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 191..254
e-value: 9.5E-10
score: 38.3
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 129..300
score: 18.295704

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_61_length_58397_cov_4.831458contigNODE_61_length_58397_cov_4.831458:45473..46537 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8729.t1Gcaud8729.t1Gracilaria caudata M_176_S67 malemRNANODE_61_length_58397_cov_4.831458 45473..46537 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8729.t1 ID=Gcaud8729.t1|Name=Gcaud8729.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=305bp
MDTHALEALRAWKPGEGTANISSCQSKPPVVVYDGSHGSSFTARALFEFP
DGGRFYLLLSGSKDNVLSHASRIYDNNNSNAAAASTARAKAATAALRVEP
DFLSTANSAKRKRPPPCAAKDPIFAPTRIATTTLMKQLSILQGMDTRRDG
FTAQPVADDLYRWNVMLYFDNVSDCEIAEDLKHLPDYDGIQLELRFPGDY
PNVPPFVRVVSPYVTGGHVASHGGICMELLTTSGWAPVYSLDLVCIQIRA
LLIHGKARVHRRIHKSHAQAYTYEGALSDHRNIVRVHRWHVHDPNRTKSK
KQRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2