Gcaud8726.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8726.t1
Unique Name	Gcaud8726.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	579

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:39246..40982 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8726	Gcaud8726	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 39246..40982 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8726.t1.start1	Gcaud8726.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 39246..39248 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8726.t1.CDS1	Gcaud8726.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 39246..40982 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8726.t1.exon1	Gcaud8726.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 39246..40982 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8726.t1.stop1	Gcaud8726.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 40980..40982 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8726.t1	Gcaud8726.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 39246..40982 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+

mRNA sequence

>Gcaud8726.t1 ID=Gcaud8726.t1|Name=Gcaud8726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp
MDPLFSDLDNGMSPDNTKDFEEMMSKTLELGNLSAQTMSSTLHLPGLSEC
QGDGSSEHATAVENIEVSPYFPPPSPVSPDVSFLALNFDPKDQAEESVNL
QEQSEGDADQVHKRIRYPTQPNSLGNMSPSPHELPLDAFAVGQSNRKSIG
IRETQETPDAKNGMILGRELAKYVTEYANRQVYFRAQSQEETPFESNGEL
FPEKRLHTNQSTQQAVILKRNVLKDENTEHGLQALLQLLSESSGPPRKKA
KIDHRLRYVMEPEFAVHTTNKTVATPGVIDAIAKEFSGKNVSEQQNTAQL
TPQLPNDAWTDLLRTGDKDDMMYNAPAPGAVRRQVSECSPLTLQPDAMPI
MQPSGADLKLRLATPLDDAWFLSPNPATPVNSGSIHRAEYPNDPGFVASN
ETKHATNISNKLAQPCSVVPQIGPQIEILYPNALRNKSPKAVRCLLRATG
DDIVSKIDLYWSHFHDYRASAERAGRLLREKSVRFERRKRMGPEVPAIEK
KAIRAQRNRERSQALRRYHKQRMGDLEAVSGQLKLYNSVARSLINCLLEE
PQSLELVQEYFGSHECSEELLTYLRSSL*

spliced messenger RNA

>Gcaud8726.t1 ID=Gcaud8726.t1|Name=Gcaud8726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCGCTGTTTTCAGATTTGGATAACGGGATGTCTCCTGATAATAC
GAAGGATTTCGAAGAAATGATGAGCAAAACTCTTGAGCTTGGCAATCTGT
CGGCTCAAACTATGTCCAGCACGCTCCACTTACCCGGTTTGAGCGAATGT
CAGGGTGACGGTTCTAGTGAACATGCCACGGCCGTGGAAAATATTGAAGT
CAGTCCATACTTTCCTCCTCCTAGTCCGGTTTCCCCGGATGTATCGTTCC
TTGCATTGAATTTCGATCCGAAAGATCAAGCTGAAGAAAGTGTGAACCTA
CAGGAGCAGTCTGAGGGGGATGCTGATCAGGTCCATAAACGGATAAGGTA
CCCTACTCAACCTAATTCGTTAGGTAATATGTCACCCAGTCCTCACGAAT
TACCATTGGATGCTTTCGCTGTAGGGCAGTCGAACCGAAAAAGCATTGGA
ATAAGGGAAACACAGGAAACCCCCGACGCGAAAAACGGTATGATACTCGG
GCGAGAGCTGGCAAAGTACGTAACGGAATATGCAAATCGGCAGGTGTATT
TCAGAGCACAGAGCCAGGAGGAGACTCCTTTTGAGAGCAATGGCGAGCTT
TTCCCTGAGAAGAGATTACATACGAACCAGTCAACCCAACAAGCTGTAAT
ACTTAAGCGGAACGTTCTCAAGGACGAGAATACTGAGCACGGACTTCAAG
CGCTTCTTCAACTTCTGAGTGAATCATCAGGTCCACCGAGGAAAAAGGCA
AAGATAGATCATCGTCTTAGATACGTTATGGAACCAGAATTTGCTGTCCA
TACAACGAACAAAACTGTGGCAACTCCGGGGGTTATAGACGCTATTGCGA
AAGAATTCTCTGGAAAGAATGTATCGGAGCAGCAAAACACGGCACAACTG
ACGCCTCAGTTGCCTAACGATGCTTGGACGGATCTTCTAAGAACTGGAGA
TAAGGATGACATGATGTACAACGCTCCTGCCCCGGGAGCAGTCCGTCGGC
AAGTTTCCGAATGTTCTCCACTCACACTTCAACCCGATGCAATGCCGATA
ATGCAACCCTCGGGGGCGGATCTGAAGCTGAGACTGGCGACACCCCTTGA
TGATGCATGGTTCCTCTCTCCGAATCCCGCAACTCCCGTGAACAGCGGGA
GTATCCATCGCGCAGAATACCCTAATGATCCTGGGTTCGTTGCTTCAAAC
GAAACGAAGCACGCTACGAACATTTCAAACAAACTCGCGCAACCTTGCTC
TGTTGTTCCCCAAATTGGTCCACAGATTGAAATTCTTTACCCAAATGCTT
TACGAAACAAGTCACCAAAAGCCGTTCGATGCCTTCTTCGCGCCACCGGA
GACGATATTGTATCGAAAATTGACTTATACTGGTCGCACTTTCATGACTA
TCGCGCCTCAGCTGAACGAGCCGGGCGTTTGCTGCGAGAAAAGAGTGTGA
GGTTCGAGAGACGTAAGCGAATGGGCCCGGAAGTCCCAGCGATTGAGAAG
AAGGCAATTCGAGCTCAGAGAAATCGAGAACGGAGTCAAGCTTTGCGTCG
TTATCATAAGCAACGAATGGGAGATCTTGAGGCCGTAAGTGGACAGCTCA
AGCTCTACAATTCAGTTGCAAGATCGCTAATTAACTGCTTATTAGAAGAA
CCCCAATCACTGGAGTTGGTTCAGGAGTATTTTGGTTCTCATGAATGCAG
TGAAGAGCTCTTGACATACTTGCGAAGTTCTCTCTGA

protein sequence of Gcaud8726.t1

>Gcaud8726.t1 ID=Gcaud8726.t1|Name=Gcaud8726.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=579bp
MDPLFSDLDNGMSPDNTKDFEEMMSKTLELGNLSAQTMSSTLHLPGLSEC
QGDGSSEHATAVENIEVSPYFPPPSPVSPDVSFLALNFDPKDQAEESVNL
QEQSEGDADQVHKRIRYPTQPNSLGNMSPSPHELPLDAFAVGQSNRKSIG
IRETQETPDAKNGMILGRELAKYVTEYANRQVYFRAQSQEETPFESNGEL
FPEKRLHTNQSTQQAVILKRNVLKDENTEHGLQALLQLLSESSGPPRKKA
KIDHRLRYVMEPEFAVHTTNKTVATPGVIDAIAKEFSGKNVSEQQNTAQL
TPQLPNDAWTDLLRTGDKDDMMYNAPAPGAVRRQVSECSPLTLQPDAMPI
MQPSGADLKLRLATPLDDAWFLSPNPATPVNSGSIHRAEYPNDPGFVASN
ETKHATNISNKLAQPCSVVPQIGPQIEILYPNALRNKSPKAVRCLLRATG
DDIVSKIDLYWSHFHDYRASAERAGRLLREKSVRFERRKRMGPEVPAIEK
KAIRAQRNRERSQALRRYHKQRMGDLEAVSGQLKLYNSVARSLINCLLEE
PQSLELVQEYFGSHECSEELLTYLRSSL*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8726.t1 ID=Gcaud8726.t1|Name=Gcaud8726.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1737bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+ (Gracilaria caudata M_176_S67 male)
ATGGATCCGCTGTTTTCAGATTTGGATAACGGGATGTCTCCTGATAATAC
GAAGGATTTCGAAGAAATGATGAGCAAAACTCTTGAGCTTGGCAATCTGT
CGGCTCAAACTATGTCCAGCACGCTCCACTTACCCGGTTTGAGCGAATGT
CAGGGTGACGGTTCTAGTGAACATGCCACGGCCGTGGAAAATATTGAAGT
CAGTCCATACTTTCCTCCTCCTAGTCCGGTTTCCCCGGATGTATCGTTCC
TTGCATTGAATTTCGATCCGAAAGATCAAGCTGAAGAAAGTGTGAACCTA
CAGGAGCAGTCTGAGGGGGATGCTGATCAGGTCCATAAACGGATAAGGTA
CCCTACTCAACCTAATTCGTTAGGTAATATGTCACCCAGTCCTCACGAAT
TACCATTGGATGCTTTCGCTGTAGGGCAGTCGAACCGAAAAAGCATTGGA
ATAAGGGAAACACAGGAAACCCCCGACGCGAAAAACGGTATGATACTCGG
GCGAGAGCTGGCAAAGTACGTAACGGAATATGCAAATCGGCAGGTGTATT
TCAGAGCACAGAGCCAGGAGGAGACTCCTTTTGAGAGCAATGGCGAGCTT
TTCCCTGAGAAGAGATTACATACGAACCAGTCAACCCAACAAGCTGTAAT
ACTTAAGCGGAACGTTCTCAAGGACGAGAATACTGAGCACGGACTTCAAG
CGCTTCTTCAACTTCTGAGTGAATCATCAGGTCCACCGAGGAAAAAGGCA
AAGATAGATCATCGTCTTAGATACGTTATGGAACCAGAATTTGCTGTCCA
TACAACGAACAAAACTGTGGCAACTCCGGGGGTTATAGACGCTATTGCGA
AAGAATTCTCTGGAAAGAATGTATCGGAGCAGCAAAACACGGCACAACTG
ACGCCTCAGTTGCCTAACGATGCTTGGACGGATCTTCTAAGAACTGGAGA
TAAGGATGACATGATGTACAACGCTCCTGCCCCGGGAGCAGTCCGTCGGC
AAGTTTCCGAATGTTCTCCACTCACACTTCAACCCGATGCAATGCCGATA
ATGCAACCCTCGGGGGCGGATCTGAAGCTGAGACTGGCGACACCCCTTGA
TGATGCATGGTTCCTCTCTCCGAATCCCGCAACTCCCGTGAACAGCGGGA
GTATCCATCGCGCAGAATACCCTAATGATCCTGGGTTCGTTGCTTCAAAC
GAAACGAAGCACGCTACGAACATTTCAAACAAACTCGCGCAACCTTGCTC
TGTTGTTCCCCAAATTGGTCCACAGATTGAAATTCTTTACCCAAATGCTT
TACGAAACAAGTCACCAAAAGCCGTTCGATGCCTTCTTCGCGCCACCGGA
GACGATATTGTATCGAAAATTGACTTATACTGGTCGCACTTTCATGACTA
TCGCGCCTCAGCTGAACGAGCCGGGCGTTTGCTGCGAGAAAAGAGTGTGA
GGTTCGAGAGACGTAAGCGAATGGGCCCGGAAGTCCCAGCGATTGAGAAG
AAGGCAATTCGAGCTCAGAGAAATCGAGAACGGAGTCAAGCTTTGCGTCG
TTATCATAAGCAACGAATGGGAGATCTTGAGGCCGTAAGTGGACAGCTCA
AGCTCTACAATTCAGTTGCAAGATCGCTAATTAACTGCTTATTAGAAGAA
CCCCAATCACTGGAGTTGGTTCAGGAGTATTTTGGTTCTCATGAATGCAG
TGAAGAGCTCTTGACATACTTGCGAAGTTCTCTCTGA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+

>Gcaud8726.t1 ID=Gcaud8726.t1|Name=Gcaud8726.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1737bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:39246..40982+ (Gracilaria caudata M_176_S67 male)
ATGGATCCGCTGTTTTCAGATTTGGATAACGGGATGTCTCCTGATAATAC
GAAGGATTTCGAAGAAATGATGAGCAAAACTCTTGAGCTTGGCAATCTGT
CGGCTCAAACTATGTCCAGCACGCTCCACTTACCCGGTTTGAGCGAATGT
CAGGGTGACGGTTCTAGTGAACATGCCACGGCCGTGGAAAATATTGAAGT
CAGTCCATACTTTCCTCCTCCTAGTCCGGTTTCCCCGGATGTATCGTTCC
TTGCATTGAATTTCGATCCGAAAGATCAAGCTGAAGAAAGTGTGAACCTA
CAGGAGCAGTCTGAGGGGGATGCTGATCAGGTCCATAAACGGATAAGGTA
CCCTACTCAACCTAATTCGTTAGGTAATATGTCACCCAGTCCTCACGAAT
TACCATTGGATGCTTTCGCTGTAGGGCAGTCGAACCGAAAAAGCATTGGA
ATAAGGGAAACACAGGAAACCCCCGACGCGAAAAACGGTATGATACTCGG
GCGAGAGCTGGCAAAGTACGTAACGGAATATGCAAATCGGCAGGTGTATT
TCAGAGCACAGAGCCAGGAGGAGACTCCTTTTGAGAGCAATGGCGAGCTT
TTCCCTGAGAAGAGATTACATACGAACCAGTCAACCCAACAAGCTGTAAT
ACTTAAGCGGAACGTTCTCAAGGACGAGAATACTGAGCACGGACTTCAAG
CGCTTCTTCAACTTCTGAGTGAATCATCAGGTCCACCGAGGAAAAAGGCA
AAGATAGATCATCGTCTTAGATACGTTATGGAACCAGAATTTGCTGTCCA
TACAACGAACAAAACTGTGGCAACTCCGGGGGTTATAGACGCTATTGCGA
AAGAATTCTCTGGAAAGAATGTATCGGAGCAGCAAAACACGGCACAACTG
ACGCCTCAGTTGCCTAACGATGCTTGGACGGATCTTCTAAGAACTGGAGA
TAAGGATGACATGATGTACAACGCTCCTGCCCCGGGAGCAGTCCGTCGGC
AAGTTTCCGAATGTTCTCCACTCACACTTCAACCCGATGCAATGCCGATA
ATGCAACCCTCGGGGGCGGATCTGAAGCTGAGACTGGCGACACCCCTTGA
TGATGCATGGTTCCTCTCTCCGAATCCCGCAACTCCCGTGAACAGCGGGA
GTATCCATCGCGCAGAATACCCTAATGATCCTGGGTTCGTTGCTTCAAAC
GAAACGAAGCACGCTACGAACATTTCAAACAAACTCGCGCAACCTTGCTC
TGTTGTTCCCCAAATTGGTCCACAGATTGAAATTCTTTACCCAAATGCTT
TACGAAACAAGTCACCAAAAGCCGTTCGATGCCTTCTTCGCGCCACCGGA
GACGATATTGTATCGAAAATTGACTTATACTGGTCGCACTTTCATGACTA
TCGCGCCTCAGCTGAACGAGCCGGGCGTTTGCTGCGAGAAAAGAGTGTGA
GGTTCGAGAGACGTAAGCGAATGGGCCCGGAAGTCCCAGCGATTGAGAAG
AAGGCAATTCGAGCTCAGAGAAATCGAGAACGGAGTCAAGCTTTGCGTCG
TTATCATAAGCAACGAATGGGAGATCTTGAGGCCGTAAGTGGACAGCTCA
AGCTCTACAATTCAGTTGCAAGATCGCTAATTAACTGCTTATTAGAAGAA
CCCCAATCACTGGAGTTGGTTCAGGAGTATTTTGGTTCTCATGAATGCAG
TGAAGAGCTCTTGACATACTTGCGAAGTTCTCTCTGA