Gcaud8730.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8730.t1
Unique Name	Gcaud8730.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:46659..47825 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0184034
PFAMs	Epimerase
Max annot lvl	554915\|Amoebozoa
Evalue	4.74e-33
EggNOG OGs	COG0451@1\|root,KOG1430@2759\|Eukaryota,3XCAD@554915\|Amoebozoa
Description	GDP-mannose 4,6 dehydratase
COG category	GM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8730	Gcaud8730	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 46659..47825 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8730.t1.stop1	Gcaud8730.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 46659..46661 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8730.t1.CDS1	Gcaud8730.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 46659..47825 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8730.t1.exon1	Gcaud8730.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 46659..47825 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8730.t1.start1	Gcaud8730.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 47823..47825 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8730.t1	Gcaud8730.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 46659..47825 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:46659..47825-
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:46659..47825-

mRNA sequence

>Gcaud8730.t1 ID=Gcaud8730.t1|Name=Gcaud8730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MSSYLSSSSSNQTIVVTGGTGYIGYALLCEIRDRFMDTLTPICIARASSD
IVRLQRLLDYPSTHDTVIICDLQDVDSLRNGVKNADIVVHLAADMDFFPR
KGKKISTVNVQGTQNLLSACAAEAEASRRAIRFVYVSSTEVIGRTNGISK
ADESHPLNPESEYAQTKMYAERIVQDYSQQLDTVIVRPTGVYGPDERFFF
YELMQMIAYGLTVVVPSPMSGRISFTHIDDVVGGILACATHSSAPGNTYN
LCPNETVTFMSIIQTLADVLKYPRPLLVLPESIGRLLIRIIAPLMNAGKS
RVFIYHPKTVSESVCHREYSNDKVRRELGFEPQYTILEGVAETLRYELQV
GSIKRSAIPPVFKRCLDLACVLAFAVRRIFLHRHQARH*

spliced messenger RNA

>Gcaud8730.t1 ID=Gcaud8730.t1|Name=Gcaud8730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:46659..47825- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGTATCTGTCCTCGAGTAGCTCGAATCAAACAATTGTGGTGAC
GGGAGGAACTGGGTACATTGGTTACGCTCTTCTATGTGAAATTCGAGATC
GCTTTATGGACACTCTAACTCCAATATGTATCGCAAGAGCTTCTTCAGAT
ATAGTGCGATTGCAGCGGCTATTGGATTACCCGAGCACCCATGACACTGT
TATCATTTGCGATCTTCAGGACGTTGATTCTTTGAGAAATGGGGTCAAGA
ATGCAGACATTGTTGTGCACCTCGCCGCTGATATGGATTTCTTCCCGAGG
AAAGGAAAGAAGATATCCACAGTCAACGTTCAAGGCACTCAAAATCTTCT
CAGTGCATGCGCAGCTGAAGCAGAGGCTTCCCGAAGAGCAATCCGCTTTG
TGTACGTTTCTTCCACAGAGGTCATAGGTCGAACGAACGGTATATCGAAG
GCCGATGAGTCACACCCTCTCAATCCTGAATCAGAATATGCGCAAACAAA
GATGTACGCCGAAAGAATTGTTCAAGACTACAGCCAGCAACTTGATACAG
TTATTGTTCGTCCAACTGGGGTTTACGGGCCTGACGAACGCTTCTTCTTT
TATGAACTCATGCAAATGATTGCGTATGGTCTAACTGTTGTTGTCCCGTC
CCCCATGTCTGGACGGATTTCCTTTACTCACATTGACGATGTTGTCGGTG
GTATCTTGGCGTGCGCGACCCACTCATCTGCGCCAGGAAATACCTACAAT
CTATGTCCCAACGAAACAGTGACATTTATGTCAATTATACAAACATTGGC
AGACGTGCTGAAGTATCCTCGCCCTTTACTCGTTCTGCCGGAATCTATTG
GTAGACTTCTAATCCGCATAATCGCTCCGCTAATGAATGCGGGTAAGTCG
CGAGTCTTTATTTATCATCCCAAAACCGTATCCGAATCCGTGTGTCATCG
TGAGTATTCCAACGATAAAGTCCGGCGTGAACTCGGTTTCGAACCACAAT
ACACTATTCTGGAAGGAGTAGCAGAGACCCTGAGGTACGAGCTTCAAGTC
GGAAGCATAAAACGATCAGCAATCCCTCCAGTTTTCAAAAGATGCCTTGA
TCTGGCCTGTGTTTTGGCTTTTGCTGTTCGTCGAATATTCCTTCATCGCC
ACCAGGCCAGACATTGA

protein sequence of Gcaud8730.t1

>Gcaud8730.t1 ID=Gcaud8730.t1|Name=Gcaud8730.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MSSYLSSSSSNQTIVVTGGTGYIGYALLCEIRDRFMDTLTPICIARASSD
IVRLQRLLDYPSTHDTVIICDLQDVDSLRNGVKNADIVVHLAADMDFFPR
KGKKISTVNVQGTQNLLSACAAEAEASRRAIRFVYVSSTEVIGRTNGISK
ADESHPLNPESEYAQTKMYAERIVQDYSQQLDTVIVRPTGVYGPDERFFF
YELMQMIAYGLTVVVPSPMSGRISFTHIDDVVGGILACATHSSAPGNTYN
LCPNETVTFMSIIQTLADVLKYPRPLLVLPESIGRLLIRIIAPLMNAGKS
RVFIYHPKTVSESVCHREYSNDKVRRELGFEPQYTILEGVAETLRYELQV
GSIKRSAIPPVFKRCLDLACVLAFAVRRIFLHRHQARH*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:46659..47825-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8730.t1 ID=Gcaud8730.t1|Name=Gcaud8730.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:46659..47825- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGTATCTGTCCTCGAGTAGCTCGAATCAAACAATTGTGGTGAC
GGGAGGAACTGGGTACATTGGTTACGCTCTTCTATGTGAAATTCGAGATC
GCTTTATGGACACTCTAACTCCAATATGTATCGCAAGAGCTTCTTCAGAT
ATAGTGCGATTGCAGCGGCTATTGGATTACCCGAGCACCCATGACACTGT
TATCATTTGCGATCTTCAGGACGTTGATTCTTTGAGAAATGGGGTCAAGA
ATGCAGACATTGTTGTGCACCTCGCCGCTGATATGGATTTCTTCCCGAGG
AAAGGAAAGAAGATATCCACAGTCAACGTTCAAGGCACTCAAAATCTTCT
CAGTGCATGCGCAGCTGAAGCAGAGGCTTCCCGAAGAGCAATCCGCTTTG
TGTACGTTTCTTCCACAGAGGTCATAGGTCGAACGAACGGTATATCGAAG
GCCGATGAGTCACACCCTCTCAATCCTGAATCAGAATATGCGCAAACAAA
GATGTACGCCGAAAGAATTGTTCAAGACTACAGCCAGCAACTTGATACAG
TTATTGTTCGTCCAACTGGGGTTTACGGGCCTGACGAACGCTTCTTCTTT
TATGAACTCATGCAAATGATTGCGTATGGTCTAACTGTTGTTGTCCCGTC
CCCCATGTCTGGACGGATTTCCTTTACTCACATTGACGATGTTGTCGGTG
GTATCTTGGCGTGCGCGACCCACTCATCTGCGCCAGGAAATACCTACAAT
CTATGTCCCAACGAAACAGTGACATTTATGTCAATTATACAAACATTGGC
AGACGTGCTGAAGTATCCTCGCCCTTTACTCGTTCTGCCGGAATCTATTG
GTAGACTTCTAATCCGCATAATCGCTCCGCTAATGAATGCGGGTAAGTCG
CGAGTCTTTATTTATCATCCCAAAACCGTATCCGAATCCGTGTGTCATCG
TGAGTATTCCAACGATAAAGTCCGGCGTGAACTCGGTTTCGAACCACAAT
ACACTATTCTGGAAGGAGTAGCAGAGACCCTGAGGTACGAGCTTCAAGTC
GGAAGCATAAAACGATCAGCAATCCCTCCAGTTTTCAAAAGATGCCTTGA
TCTGGCCTGTGTTTTGGCTTTTGCTGTTCGTCGAATATTCCTTCATCGCC
ACCAGGCCAGACATTGA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:46659..47825-

>Gcaud8730.t1 ID=Gcaud8730.t1|Name=Gcaud8730.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1167bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:46659..47825- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGTATCTGTCCTCGAGTAGCTCGAATCAAACAATTGTGGTGAC
GGGAGGAACTGGGTACATTGGTTACGCTCTTCTATGTGAAATTCGAGATC
GCTTTATGGACACTCTAACTCCAATATGTATCGCAAGAGCTTCTTCAGAT
ATAGTGCGATTGCAGCGGCTATTGGATTACCCGAGCACCCATGACACTGT
TATCATTTGCGATCTTCAGGACGTTGATTCTTTGAGAAATGGGGTCAAGA
ATGCAGACATTGTTGTGCACCTCGCCGCTGATATGGATTTCTTCCCGAGG
AAAGGAAAGAAGATATCCACAGTCAACGTTCAAGGCACTCAAAATCTTCT
CAGTGCATGCGCAGCTGAAGCAGAGGCTTCCCGAAGAGCAATCCGCTTTG
TGTACGTTTCTTCCACAGAGGTCATAGGTCGAACGAACGGTATATCGAAG
GCCGATGAGTCACACCCTCTCAATCCTGAATCAGAATATGCGCAAACAAA
GATGTACGCCGAAAGAATTGTTCAAGACTACAGCCAGCAACTTGATACAG
TTATTGTTCGTCCAACTGGGGTTTACGGGCCTGACGAACGCTTCTTCTTT
TATGAACTCATGCAAATGATTGCGTATGGTCTAACTGTTGTTGTCCCGTC
CCCCATGTCTGGACGGATTTCCTTTACTCACATTGACGATGTTGTCGGTG
GTATCTTGGCGTGCGCGACCCACTCATCTGCGCCAGGAAATACCTACAAT
CTATGTCCCAACGAAACAGTGACATTTATGTCAATTATACAAACATTGGC
AGACGTGCTGAAGTATCCTCGCCCTTTACTCGTTCTGCCGGAATCTATTG
GTAGACTTCTAATCCGCATAATCGCTCCGCTAATGAATGCGGGTAAGTCG
CGAGTCTTTATTTATCATCCCAAAACCGTATCCGAATCCGTGTGTCATCG
TGAGTATTCCAACGATAAAGTCCGGCGTGAACTCGGTTTCGAACCACAAT
ACACTATTCTGGAAGGAGTAGCAGAGACCCTGAGGTACGAGCTTCAAGTC
GGAAGCATAAAACGATCAGCAATCCCTCCAGTTTTCAAAAGATGCCTTGA
TCTGGCCTGTGTTTTGGCTTTTGCTGTTCGTCGAATATTCCTTCATCGCC
ACCAGGCCAGACATTGA