Gcaud8727.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8727.t1
Unique Name	Gcaud8727.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:42081..43101 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP013CT
Preferred name	YHM2
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15100
KEGG TC	2.A.29.7
GOs	GO:0000002,GO:0003674,GO:0003676,GO:0003677,GO:0005215,GO:0005310,GO:0005342,GO:0005371,GO:0005469,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006842,GO:0006843,GO:0006855,GO:0006996,GO:0007005,GO:0008150,GO:0008509,GO:0008514,GO:0009295,GO:0009987,GO:0015075,GO:0015138,GO:0015141,GO:0015142,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015742,GO:0015744,GO:0015746,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0034220,GO:0035674,GO:0042221,GO:0042493,GO:0042645,GO:0042891,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051181,GO:0051234,GO:0055085,GO:0070013,GO:0071422,GO:0071702,GO:0071840,GO:0097159,GO:0098656,GO:1901363,GO:1903825,GO:1905039,GO:1990542,GO:1990546
Evalue	6.31e-113
EggNOG OGs	KOG0756@1\|root,KOG0756@2759\|Eukaryota
Description	mitochondrial tricarboxylic acid transmembrane transport
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8727	Gcaud8727	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 42081..43101 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1	Gcaud8727.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 42081..43101 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1.start1	Gcaud8727.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 42081..42083 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1.CDS1	Gcaud8727.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 42081..42173 +
Gcaud8727.t1.CDS2	Gcaud8727.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 42268..43101 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1.exon1	Gcaud8727.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 42081..42173 +
Gcaud8727.t1.exon2	Gcaud8727.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 42268..43101 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1.intron1	Gcaud8727.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_61_length_58397_cov_4.831458 42174..42267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8727.t1.stop1	Gcaud8727.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 43099..43101 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+

mRNA sequence

>Gcaud8727.t1 ID=Gcaud8727.t1|Name=Gcaud8727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=309bp
MHSQRDPLKVIPNHGQKREIAAARGRVDIRNVAIGAGLQMFEVSTLGQPF
ENMKVMMAAHRNDTLMDACRRLYSARGISGFWQGLIPWAWIEALTKGGVL
LFSQHEINKVGKGIGCSSELSNALGGVGGGVCQAYSTMGICCFMKTVEVT
RSKAGPGGQKSTLSVAADILKRDGILGMYKGVNAVALRQATNWGSRFGFS
RVIESAIRGKNREGSLTKTERLASSVVGGALACWNQPFEVVRVEMQRADG
GPGTRTIGGAIRQIYESSGLRGFYRGVTPRVGLSAYLTTVMVFGGDEVRS
YLKKRGQR*

spliced messenger RNA

>Gcaud8727.t1 ID=Gcaud8727.t1|Name=Gcaud8727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=927bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCCCAACGAGATCCGCTAAAGGTTATTCCCAATCATGGCCAAAA
AAGGGAAATAGCTGCCGCTCGAGGAAGAGTAGACATCCGGAATGTTGCGA
TTGGCGCAGGTTTGCAGATGTTTGAAGTTTCAACTCTAGGTCAGCCATTT
GAGAATATGAAGGTTATGATGGCAGCTCATAGAAATGATACGTTGATGGA
TGCGTGCAGACGCCTTTATTCTGCTCGTGGAATCTCTGGGTTCTGGCAAG
GGCTTATTCCATGGGCATGGATAGAGGCTTTGACAAAAGGAGGAGTGTTG
TTGTTTTCACAGCATGAAATAAACAAAGTAGGAAAAGGAATCGGGTGTAG
TTCAGAGCTTTCAAATGCTCTGGGAGGTGTTGGCGGTGGTGTATGCCAGG
CATATTCAACAATGGGTATTTGTTGTTTCATGAAGACGGTCGAAGTGACA
CGGTCAAAAGCGGGGCCAGGGGGTCAAAAGAGCACGCTGTCCGTTGCTGC
CGACATCCTCAAACGGGATGGTATCCTGGGCATGTACAAGGGCGTGAACG
CAGTTGCGTTAAGGCAGGCTACGAACTGGGGTTCTCGATTTGGGTTCTCT
CGAGTCATCGAGTCAGCGATCAGAGGAAAGAACAGAGAAGGAAGTCTTAC
AAAAACAGAAAGGTTGGCGTCAAGTGTAGTTGGAGGGGCTTTGGCATGTT
GGAATCAGCCTTTTGAAGTCGTCCGCGTTGAAATGCAAAGAGCAGATGGC
GGTCCGGGAACGAGGACGATCGGTGGAGCCATCCGACAAATATATGAATC
TAGTGGGTTACGAGGATTTTATAGGGGAGTCACTCCTCGAGTAGGTTTAT
CAGCGTACTTGACAACAGTGATGGTTTTTGGGGGAGATGAAGTTCGAAGT
TACTTGAAAAAGCGCGGGCAAAGGTAG

protein sequence of Gcaud8727.t1

>Gcaud8727.t1 ID=Gcaud8727.t1|Name=Gcaud8727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=309bp
MHSQRDPLKVIPNHGQKREIAAARGRVDIRNVAIGAGLQMFEVSTLGQPF
ENMKVMMAAHRNDTLMDACRRLYSARGISGFWQGLIPWAWIEALTKGGVL
LFSQHEINKVGKGIGCSSELSNALGGVGGGVCQAYSTMGICCFMKTVEVT
RSKAGPGGQKSTLSVAADILKRDGILGMYKGVNAVALRQATNWGSRFGFS
RVIESAIRGKNREGSLTKTERLASSVVGGALACWNQPFEVVRVEMQRADG
GPGTRTIGGAIRQIYESSGLRGFYRGVTPRVGLSAYLTTVMVFGGDEVRS
YLKKRGQR*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8727.t1 ID=Gcaud8727.t1|Name=Gcaud8727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1021bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+ (Gracilaria caudata M_176_S67 male)
ATGCATTCCCAACGAGATCCGCTAAAGGTTATTCCCAATCATGGCCAAAA
AAGGGAAATAGCTGCCGCTCGAGGAAGAGTAGACATCCGGAATGTAAGGA
TTGCGCCAAGCTTCGGATCGCGGACAATCGAAATGTCCGTCAAGCTGCAG
AGTACGAGCTAACGAAAATAGAAATTTATGCGAGCAGGTTGCGATTGGCG
CAGGTTTGCAGATGTTTGAAGTTTCAACTCTAGGTCAGCCATTTGAGAAT
ATGAAGGTTATGATGGCAGCTCATAGAAATGATACGTTGATGGATGCGTG
CAGACGCCTTTATTCTGCTCGTGGAATCTCTGGGTTCTGGCAAGGGCTTA
TTCCATGGGCATGGATAGAGGCTTTGACAAAAGGAGGAGTGTTGTTGTTT
TCACAGCATGAAATAAACAAAGTAGGAAAAGGAATCGGGTGTAGTTCAGA
GCTTTCAAATGCTCTGGGAGGTGTTGGCGGTGGTGTATGCCAGGCATATT
CAACAATGGGTATTTGTTGTTTCATGAAGACGGTCGAAGTGACACGGTCA
AAAGCGGGGCCAGGGGGTCAAAAGAGCACGCTGTCCGTTGCTGCCGACAT
CCTCAAACGGGATGGTATCCTGGGCATGTACAAGGGCGTGAACGCAGTTG
CGTTAAGGCAGGCTACGAACTGGGGTTCTCGATTTGGGTTCTCTCGAGTC
ATCGAGTCAGCGATCAGAGGAAAGAACAGAGAAGGAAGTCTTACAAAAAC
AGAAAGGTTGGCGTCAAGTGTAGTTGGAGGGGCTTTGGCATGTTGGAATC
AGCCTTTTGAAGTCGTCCGCGTTGAAATGCAAAGAGCAGATGGCGGTCCG
GGAACGAGGACGATCGGTGGAGCCATCCGACAAATATATGAATCTAGTGG
GTTACGAGGATTTTATAGGGGAGTCACTCCTCGAGTAGGTTTATCAGCGT
ACTTGACAACAGTGATGGTTTTTGGGGGAGATGAAGTTCGAAGTTACTTG
AAAAAGCGCGGGCAAAGGTAG

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+

>Gcaud8727.t1 ID=Gcaud8727.t1|Name=Gcaud8727.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=927bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:42081..43101+ (Gracilaria caudata M_176_S67 male)
ATGCATTCCCAACGAGATCCGCTAAAGGTTATTCCCAATCATGGCCAAAA
AAGGGAAATAGCTGCCGCTCGAGGAAGAGTAGACATCCGGAATGTTGCGA
TTGGCGCAGGTTTGCAGATGTTTGAAGTTTCAACTCTAGGTCAGCCATTT
GAGAATATGAAGGTTATGATGGCAGCTCATAGAAATGATACGTTGATGGA
TGCGTGCAGACGCCTTTATTCTGCTCGTGGAATCTCTGGGTTCTGGCAAG
GGCTTATTCCATGGGCATGGATAGAGGCTTTGACAAAAGGAGGAGTGTTG
TTGTTTTCACAGCATGAAATAAACAAAGTAGGAAAAGGAATCGGGTGTAG
TTCAGAGCTTTCAAATGCTCTGGGAGGTGTTGGCGGTGGTGTATGCCAGG
CATATTCAACAATGGGTATTTGTTGTTTCATGAAGACGGTCGAAGTGACA
CGGTCAAAAGCGGGGCCAGGGGGTCAAAAGAGCACGCTGTCCGTTGCTGC
CGACATCCTCAAACGGGATGGTATCCTGGGCATGTACAAGGGCGTGAACG
CAGTTGCGTTAAGGCAGGCTACGAACTGGGGTTCTCGATTTGGGTTCTCT
CGAGTCATCGAGTCAGCGATCAGAGGAAAGAACAGAGAAGGAAGTCTTAC
AAAAACAGAAAGGTTGGCGTCAAGTGTAGTTGGAGGGGCTTTGGCATGTT
GGAATCAGCCTTTTGAAGTCGTCCGCGTTGAAATGCAAAGAGCAGATGGC
GGTCCGGGAACGAGGACGATCGGTGGAGCCATCCGACAAATATATGAATC
TAGTGGGTTACGAGGATTTTATAGGGGAGTCACTCCTCGAGTAGGTTTAT
CAGCGTACTTGACAACAGTGATGGTTTTTGGGGGAGATGAAGTTCGAAGT
TACTTGAAAAAGCGCGGGCAAAGGTAG