Gcaud8723.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8723.t1
Unique NameGcaud8723.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length173
Homology
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A2V3IRF6_9FLOR (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRF6_9FLOR)

HSP 1 Score: 187 bits (474), Expect = 2.560e-58
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 0
Query:   76 KSSAKDVGKFIAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            +S   D GKFIAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVI PVGGVDITPIFWFA+MSFVHEILVGPQGLLVLLSQK
Sbjct:   27 RSPLIDAGKFIAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIPPVGGVDITPIFWFAVMSFVHEILVGPQGLLVLLSQK 123          
BLAST of Gcaud8723.t1 vs. uniprot
Match: R7Q9R6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9R6_CHOCR)

HSP 1 Score: 160 bits (406), Expect = 1.740e-46
Identity = 76/96 (79.17%), Postives = 84/96 (87.50%), Query Frame = 0
Query:   77 SSAKDVGKFIAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            S A   GK +AGP INLFNFVM+VR IL+WYP+TDLAK PWI+IAVPTEPLL ATRK+I PVGGVDI+PI WFA+MSFVHEILVGPQGLLVLL QK
Sbjct:  141 SLALSAGKILAGPGINLFNFVMVVRIILSWYPKTDLAKPPWIYIAVPTEPLLSATRKIIPPVGGVDISPIVWFAIMSFVHEILVGPQGLLVLLGQK 236          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A5J4YRT8_PORPP (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRT8_PORPP)

HSP 1 Score: 119 bits (297), Expect = 8.810e-31
Identity = 54/91 (59.34%), Postives = 73/91 (80.22%), Query Frame = 0
Query:   82 VGKFIAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            V +F+AGP I +FN VM+VR  L+WYP+T+ A+ PWI++   TEPLL+ATRKV+ P GGVD++PI W  L  F++EIL+GPQGLLVL++QK
Sbjct:   88 VAQFLAGPVIYVFNTVMLVRIPLSWYPKTE-AQPPWIYLVALTEPLLKATRKVVPPQGGVDVSPIIWLGLGLFLNEILIGPQGLLVLIAQK 177          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A7J7N194_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7N194_9MAGN)

HSP 1 Score: 118 bits (296), Expect = 1.870e-30
Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            I GP  + F F+ ++R I++WYP+  + K P++    PTEP+L+ TRK+IQP+GGVD+TP+ WFAL+SF++EILVGPQGLLVLLSQ+
Sbjct:  104 ILGPFFSAFGFLFVMRIIMSWYPKLPVGKLPYVLAYAPTEPILKQTRKIIQPLGGVDVTPVVWFALISFLNEILVGPQGLLVLLSQQ 190          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A443PI53_9MAGN (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PI53_9MAGN)

HSP 1 Score: 118 bits (296), Expect = 3.010e-30
Identity = 52/87 (59.77%), Postives = 70/87 (80.46%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            + GP ++ F F+ I+R I++WYP+  + K P++    PTEPLL  TRK+IQPVGGVD+TP+ WFA++SF++EILVGPQGLLVLLSQK
Sbjct:  123 LLGPLLSGFGFLFILRIIMSWYPKLPVGKFPYVIAYAPTEPLLSPTRKLIQPVGGVDVTPVVWFAIISFLNEILVGPQGLLVLLSQK 209          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A835S017_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S017_VANPL)

HSP 1 Score: 115 bits (289), Expect = 1.790e-29
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            I GP ++ F F+ I+R +++WYP+  + K P++ +  PTEP L  TRKVI P+GGVD+TP+ WF L+SF++EILVGPQGLLVLLSQK
Sbjct:   99 IIGPFLSAFGFLFIIRIVMSWYPKIPVEKFPYVIVYAPTEPFLVFTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQK 185          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A8J5FNE4_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FNE4_ZINOF)

HSP 1 Score: 116 bits (291), Expect = 2.230e-29
Identity = 51/87 (58.62%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            IAGP ++ F F+ I+R +++WYP+  + K P++    PTEP L  TRKVI P+GGVD+TP+ WF L+SF++EILVGPQGLLVLLSQK
Sbjct:  134 IAGPFLSAFGFLFIIRIVMSWYPKLPVKKFPFVVAYAPTEPFLSITRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQK 220          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A7N0UIX8_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UIX8_KALFE)

HSP 1 Score: 115 bits (289), Expect = 2.400e-29
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            + GP ++ F+F+ IVR +++WYP+  + K P++    PTEP+L  TRKVI PVGGVD+TP+ WF L+SF +EILVGPQGLLVLLSQ+
Sbjct:  110 VLGPLLSAFSFLFIVRIVMSWYPKLPIDKFPYVLAYAPTEPILVITRKVIPPVGGVDVTPVVWFGLLSFANEILVGPQGLLVLLSQQ 196          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A834LL60_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LL60_RHOSS)

HSP 1 Score: 112 bits (279), Expect = 8.490e-29
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 0
Query:   88 GPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            GP ++ F F+ I+R +++WYP+  + K P++    PTEPLL  TRKVI P+ GVD+TP+ WF L+SF+ EILVGPQGLLVLLSQK
Sbjct:   33 GPFLSAFGFLFILRIVMSWYPKLPVEKFPYVLAYAPTEPLLSPTRKVIPPLAGVDVTPVVWFGLISFLSEILVGPQGLLVLLSQK 117          
BLAST of Gcaud8723.t1 vs. uniprot
Match: A0A059BB65_EUCGR (Uncharacterized protein n=3 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BB65_EUCGR)

HSP 1 Score: 114 bits (286), Expect = 9.210e-29
Identity = 50/87 (57.47%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   86 IAGPCINLFNFVMIVRTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFALMSFVHEILVGPQGLLVLLSQK 172
            I GP ++ F F+ +VR +++WYP+  + K P++    PTEPLL  TRK+I P+GGVD+TP+ WF L+SF++EILVGPQGLLVLLSQK
Sbjct:  121 ILGPFLSAFAFLFVVRIVMSWYPKLPVGKFPYVIAYAPTEPLLIPTRKLIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQK 207          
The following BLAST results are available for this feature:
BLAST of Gcaud8723.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRF6_9FLOR2.560e-5892.78Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
R7Q9R6_CHOCR1.740e-4679.17Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YRT8_PORPP8.810e-3159.34Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A7J7N194_9MAGN1.870e-3057.47Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A443PI53_9MAGN3.010e-3059.77Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B C... [more]
A0A835S017_VANPL1.790e-2957.47Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A8J5FNE4_ZINOF2.230e-2958.62Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A7N0UIX8_KALFE2.400e-2957.47Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
A0A834LL60_RHOSS8.490e-2957.65Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
A0A059BB65_EUCGR9.210e-2957.47Uncharacterized protein n=3 Tax=Eucalyptus grandis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003425CCB3/YggTPFAMPF02325YGGTcoord: 91..158
e-value: 1.1E-13
score: 51.3
IPR003425CCB3/YggTPANTHERPTHR33219YLMG HOMOLOG PROTEIN 2, CHLOROPLASTICcoord: 57..172
NoneNo IPR availablePANTHERPTHR33219:SF11PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTICcoord: 57..172
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..84
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 146..169
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..107
NoneNo IPR availableTMHMMTMhelixcoord: 147..169
NoneNo IPR availableTMHMMTMhelixcoord: 85..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_61_length_58397_cov_4.831458contigNODE_61_length_58397_cov_4.831458:33447..34145 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1Gcaud8723.t1Gracilaria caudata M_176_S67 malemRNANODE_61_length_58397_cov_4.831458 33447..34145 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MILPVQPILVFFRDEKRKITQVEDSSTRKKYGGNSSQLQATQTSLHQHML
SFKNSFLVSAFQRFTEEVSAMFEEKKSSAKDVGKFIAGPCINLFNFVMIV
RTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFA
LMSFVHEILVGPQGLLVLLSQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003425CCB3/YggT