Gcaud8723.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8723.t1
Unique NameGcaud8723.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_61_length_58397_cov_4.831458contigNODE_61_length_58397_cov_4.831458:33447..34145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009351702.1
PFAMsYGGT
Max annot lvl35493|Streptophyta
KEGG koko:K02221
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
Evalue9.62e-31
EggNOG OGsCOG0762@1|root,2S21M@2759|Eukaryota,37UHZ@33090|Viridiplantae,3GJP8@35493|Streptophyta,4JPE5@91835|fabids
DescriptionYGGT family
COG categoryS
BRITEko00000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8723Gcaud8723Gracilaria caudata M_176_S67 malegeneNODE_61_length_58397_cov_4.831458 33447..34145 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1Gcaud8723.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_61_length_58397_cov_4.831458 33447..34145 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1.start1Gcaud8723.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_61_length_58397_cov_4.831458 33447..33449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1.CDS1Gcaud8723.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 33447..33461 +
Gcaud8723.t1.CDS2Gcaud8723.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 33569..33796 +
Gcaud8723.t1.CDS3Gcaud8723.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_61_length_58397_cov_4.831458 33870..34145 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1.exon1Gcaud8723.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 33447..33461 +
Gcaud8723.t1.exon2Gcaud8723.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 33569..33796 +
Gcaud8723.t1.exon3Gcaud8723.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_61_length_58397_cov_4.831458 33870..34145 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1.intron1Gcaud8723.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_61_length_58397_cov_4.831458 33462..33568 +
Gcaud8723.t1.intron2Gcaud8723.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_61_length_58397_cov_4.831458 33797..33869 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8723.t1.stop1Gcaud8723.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_61_length_58397_cov_4.831458 34143..34145 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=173bp
MILPVQPILVFFRDEKRKITQVEDSSTRKKYGGNSSQLQATQTSLHQHML
SFKNSFLVSAFQRFTEEVSAMFEEKKSSAKDVGKFIAGPCINLFNFVMIV
RTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFA
LMSFVHEILVGPQGLLVLLSQK*
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spliced messenger RNA

>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:33447..34145+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATTACCCGTGCAACCAATTCTAGTTTTCTTTCGAGACGAGAAAAG
GAAAATCACGCAAGTTGAAGATTCGAGTACCCGCAAGAAGTATGGTGGCA
ACAGCAGTCAACTACAAGCTACCCAAACTAGCCTTCATCAACACATGCTT
TCTTTCAAGAACTCATTCCTCGTATCAGCATTTCAAAGATTCACGGAGGA
GGTATCAGCCATGTTCGAAGAAAAGAAATCCAGTGCCAAAGATGTCGGCA
AATTTATTGCCGGTCCATGCATCAATTTATTCAACTTCGTCATGATTGTA
AGGACAATTCTCACCTGGTATCCTCAGACGGATCTGGCAAAGAAGCCGTG
GATATTTATCGCTGTGCCGACCGAACCTCTGCTTCGAGCCACACGAAAAG
TAATCCAACCCGTAGGTGGGGTGGACATTACCCCTATTTTCTGGTTTGCG
CTCATGTCTTTTGTGCATGAGATCTTGGTGGGTCCGCAGGGATTGCTGGT
ATTATTATCTCAGAAATGA
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protein sequence of Gcaud8723.t1

>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=173bp
MILPVQPILVFFRDEKRKITQVEDSSTRKKYGGNSSQLQATQTSLHQHML
SFKNSFLVSAFQRFTEEVSAMFEEKKSSAKDVGKFIAGPCINLFNFVMIV
RTILTWYPQTDLAKKPWIFIAVPTEPLLRATRKVIQPVGGVDITPIFWFA
LMSFVHEILVGPQGLLVLLSQK*
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mRNA from alignment at NODE_61_length_58397_cov_4.831458:33447..34145+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=699bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:33447..34145+ (Gracilaria caudata M_176_S67 male)
ATGATATTACCCGTGGTATGTGGTCCGCAACAAGATTTGGTCCCTTTCTA
CCCCCGCAAACTTTTTGGACTTCGTGCTGATCTTTGCGCTTCCCCGTTTT
GCTTGGAGCGAGAGCGCTGCAGCAACCAATTCTAGTTTTCTTTCGAGACG
AGAAAAGGAAAATCACGCAAGTTGAAGATTCGAGTACCCGCAAGAAGTAT
GGTGGCAACAGCAGTCAACTACAAGCTACCCAAACTAGCCTTCATCAACA
CATGCTTTCTTTCAAGAACTCATTCCTCGTATCAGCATTTCAAAGATTCA
CGGAGGAGGTATCAGCCATGTTCGAAGAAAAGAAATCCAGTGCCAAAGAT
GTCCATAGAAAGTGTTGATGCATTGAACTCACTTCCTGCGATGACACTCG
CACTAGATTCTCCTCTTCTGCAGGTCGGCAAATTTATTGCCGGTCCATGC
ATCAATTTATTCAACTTCGTCATGATTGTAAGGACAATTCTCACCTGGTA
TCCTCAGACGGATCTGGCAAAGAAGCCGTGGATATTTATCGCTGTGCCGA
CCGAACCTCTGCTTCGAGCCACACGAAAAGTAATCCAACCCGTAGGTGGG
GTGGACATTACCCCTATTTTCTGGTTTGCGCTCATGTCTTTTGTGCATGA
GATCTTGGTGGGTCCGCAGGGATTGCTGGTATTATTATCTCAGAAATGA
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Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:33447..34145+

>Gcaud8723.t1 ID=Gcaud8723.t1|Name=Gcaud8723.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=519bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:33447..34145+ (Gracilaria caudata M_176_S67 male)
ATGATATTACCCGTGCAACCAATTCTAGTTTTCTTTCGAGACGAGAAAAG
GAAAATCACGCAAGTTGAAGATTCGAGTACCCGCAAGAAGTATGGTGGCA
ACAGCAGTCAACTACAAGCTACCCAAACTAGCCTTCATCAACACATGCTT
TCTTTCAAGAACTCATTCCTCGTATCAGCATTTCAAAGATTCACGGAGGA
GGTATCAGCCATGTTCGAAGAAAAGAAATCCAGTGCCAAAGATGTCGGCA
AATTTATTGCCGGTCCATGCATCAATTTATTCAACTTCGTCATGATTGTA
AGGACAATTCTCACCTGGTATCCTCAGACGGATCTGGCAAAGAAGCCGTG
GATATTTATCGCTGTGCCGACCGAACCTCTGCTTCGAGCCACACGAAAAG
TAATCCAACCCGTAGGTGGGGTGGACATTACCCCTATTTTCTGGTTTGCG
CTCATGTCTTTTGTGCATGAGATCTTGGTGGGTCCGCAGGGATTGCTGGT
ATTATTATCTCAGAAATGA
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