Gcaud2227.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2227.t1
Unique NameGcaud2227.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_11630_length_479_cov_12.907216contigNODE_11630_length_479_cov_12.907216:2..378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2227Gcaud2227Gracilaria caudata M_176_S67 malegeneNODE_11630_length_479_cov_12.907216 2..378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2227.t1.CDS1Gcaud2227.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_11630_length_479_cov_12.907216 2..378 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2227.t1.exon1Gcaud2227.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_11630_length_479_cov_12.907216 2..378 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2227.t1.start1Gcaud2227.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_11630_length_479_cov_12.907216 376..378 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2227.t1Gcaud2227.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_11630_length_479_cov_12.907216 2..378 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2227.t1 ID=Gcaud2227.t1|Name=Gcaud2227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
MSGSQRTEALKNTSSVVLKELHRIEATAWGTSIVNVIKPDDLTNIVTLAS
LRKAYLQLCLLVHPDKGGSCNTAKATKCTQILAKCFEVAKDFIAQHQQAS
SSAVVPRNLRYYGFNDEDYPRDNGIX
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spliced messenger RNA

>Gcaud2227.t1 ID=Gcaud2227.t1|Name=Gcaud2227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp|location=Sequence derived from alignment at NODE_11630_length_479_cov_12.907216:2..378- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGATCTCAACGCACCGAAGCACTGAAGAACACCTCCTCCGTTGT
ACTCAAAGAGTTACATCGTATCGAAGCAACAGCATGGGGAACGTCAATTG
TTAACGTAATCAAACCCGACGACTTGACTAACATTGTCACTCTTGCAAGT
CTTCGAAAGGCTTATCTACAGTTATGCCTACTCGTTCATCCTGATAAAGG
TGGTTCATGCAACACGGCAAAGGCTACAAAATGTACTCAAATACTTGCGA
AGTGTTTTGAGGTTGCCAAGGACTTCATTGCACAACACCAGCAAGCAAGT
TCCTCTGCAGTTGTACCTAGAAATCTACGATATTATGGATTCAACGACGA
GGACTATCCGCGAGATAATGGAATTAG
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protein sequence of Gcaud2227.t1

>Gcaud2227.t1 ID=Gcaud2227.t1|Name=Gcaud2227.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
MSGSQRTEALKNTSSVVLKELHRIEATAWGTSIVNVIKPDDLTNIVTLAS
LRKAYLQLCLLVHPDKGGSCNTAKATKCTQILAKCFEVAKDFIAQHQQAS
SSAVVPRNLRYYGFNDEDYPRDNGIX
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mRNA from alignment at NODE_11630_length_479_cov_12.907216:2..378-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2227.t1 ID=Gcaud2227.t1|Name=Gcaud2227.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=377bp|location=Sequence derived from alignment at NODE_11630_length_479_cov_12.907216:2..378- (Gracilaria caudata M_176_S67 male)
ATGTCAGGATCTCAACGCACCGAAGCACTGAAGAACACCTCCTCCGTTGT
ACTCAAAGAGTTACATCGTATCGAAGCAACAGCATGGGGAACGTCAATTG
TTAACGTAATCAAACCCGACGACTTGACTAACATTGTCACTCTTGCAAGT
CTTCGAAAGGCTTATCTACAGTTATGCCTACTCGTTCATCCTGATAAAGG
TGGTTCATGCAACACGGCAAAGGCTACAAAATGTACTCAAATACTTGCGA
AGTGTTTTGAGGTTGCCAAGGACTTCATTGCACAACACCAGCAAGCAAGT
TCCTCTGCAGTTGTACCTAGAAATCTACGATATTATGGATTCAACGACGA
GGACTATCCGCGAGATAATGGAATTAG
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Coding sequence (CDS) from alignment at NODE_11630_length_479_cov_12.907216:2..378-

>Gcaud2227.t1 ID=Gcaud2227.t1|Name=Gcaud2227.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=377bp|location=Sequence derived from alignment at NODE_11630_length_479_cov_12.907216:2..378- (Gracilaria caudata M_176_S67 male)
ATGTCAGGATCTCAACGCACCGAAGCACTGAAGAACACCTCCTCCGTTGT
ACTCAAAGAGTTACATCGTATCGAAGCAACAGCATGGGGAACGTCAATTG
TTAACGTAATCAAACCCGACGACTTGACTAACATTGTCACTCTTGCAAGT
CTTCGAAAGGCTTATCTACAGTTATGCCTACTCGTTCATCCTGATAAAGG
TGGTTCATGCAACACGGCAAAGGCTACAAAATGTACTCAAATACTTGCGA
AGTGTTTTGAGGTTGCCAAGGACTTCATTGCACAACACCAGCAAGCAAGT
TCCTCTGCAGTTGTACCTAGAAATCTACGATATTATGGATTCAACGACGA
GGACTATCCGCGAGATAATGGAATTAG
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