Gcaud8038.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8038.t1
Unique NameGcaud8038.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length245
Homology
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A2V3INT1_9FLOR (60S ribosomal protein L6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT1_9FLOR)

HSP 1 Score: 350 bits (897), Expect = 3.540e-120
Identity = 174/213 (81.69%), Postives = 193/213 (90.61%), Query Frame = 0
Query:   32 MGLSRDARRRAKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            MG SRDARRRAKEAPTKPVLQT+ KKIGGEKNGGERTV+VNKGPKWYPADDIKKPVPSR+H HKP KLRSSI  G++LILLAGRL+G RVI L QL SG LLVTGPYS+NRIPLRRV+QAYVIATST++DVSAVD+SKFDDAYFKRVKAK  +DVMETDE  AKY+PTEER+ADQK V+QVLVP+IEKEP+MTSYLK+RF L+RGM PH M F
Sbjct:    1 MGKSRDARRRAKEAPTKPVLQTITKKIGGEKNGGERTVIVNKGPKWYPADDIKKPVPSRKHAHKPPKLRSSIKPGSVLILLAGRLQGCRVIFLKQLKSGMLLVTGPYSVNRIPLRRVNQAYVIATSTSVDVSAVDVSKFDDAYFKRVKAKKNADVMETDEEAAKYAPTEERIADQKAVDQVLVPVIEKEPLMTSYLKNRFTLRRGMNPHVMSF 213          
BLAST of Gcaud8038.t1 vs. uniprot
Match: R7QHE3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHE3_CHOCR)

HSP 1 Score: 265 bits (678), Expect = 1.480e-86
Identity = 128/199 (64.32%), Postives = 160/199 (80.40%), Query Frame = 0
Query:   47 TKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETDEGEA-KYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            ++PV+QT+ K IGGEKNGG R V+   GPKWYPADD++ PVPSR+H+HKPTKLR+ I+ GTILILLAG  RGSRV+ L QL SG LLVTGPYS+NRIP++RV+QAYVIATST ++VS  D++KFDD YFKR K    S VME DEG+A K +PT+E++ADQK ++ VLVP IEK P ++SYLK +F L +G +PHEM F
Sbjct:   36 SEPVVQTITKPIGGEKNGGTREVIKKTGPKWYPADDVRAPVPSRKHVHKPTKLRAGITPGTILILLAGANRGSRVVFLKQLSSGLLLVTGPYSVNRIPIKRVEQAYVIATSTKIEVSGCDVAKFDDEYFKRDKGSKASVVMEVDEGDASKKTPTQEKIADQKAIDAVLVPAIEKVPQLSSYLKVKFTLSKGQYPHEMKF 234          
BLAST of Gcaud8038.t1 vs. uniprot
Match: Q7XY83_GRIJA (Ribosome protein L6 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY83_GRIJA)

HSP 1 Score: 251 bits (642), Expect = 2.370e-81
Identity = 126/211 (59.72%), Postives = 161/211 (76.30%), Query Frame = 0
Query:   35 SRDARRRAKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETD---EGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEM 242
            SR+AR RAK+      ++ + K IGG KNGG R V   KGPKWYPADD K PVPSR+++HKPTKLR SI +GTI+ILLAG  RGSRV+ L QL SG+LLVTGPY++NRIPL RVDQ YVIATST++DVS VD+ K D+AYF++ + K  +DVME D   + E K    E R+ADQK ++ VL+P+IEKEP+++SYLK +F+LK+G +PH M
Sbjct:    4 SRNARTRAKQVVIPEPIKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTKLRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKKIDNAYFRKPQKKKKTDVMEVDTAKKDEQKTKAIEARIADQKAIDAVLLPVIEKEPLLSSYLKVKFSLKKGQYPHAM 214          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A7S3A2Q9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Q9_9RHOD)

HSP 1 Score: 233 bits (593), Expect = 6.430e-74
Identity = 123/217 (56.68%), Postives = 157/217 (72.35%), Query Frame = 0
Query:   32 MGLSRDARRRAKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTS----DVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            + ++RD RR AKEA   PV   V K IGGEKNGG+R  +V     +YPADD+KKP+PSR+HIHKPTKLRSSI+ GTILILLAG  RG RV+ L QL +G LLVTGPYS+N +PLR+VDQAYVIATST +DVS VD+SKFD  YFK+ K+K +     D M  +  E K    E +VADQK V+  ++  ++KE M+ +YL +RF+L +G +PH+M F
Sbjct:    2 VSMNRDRRRAAKEAAATPVKAAVEKPIGGEKNGGKR--LVQPKAAYYPADDVKKPLPSRKHIHKPTKLRSSITPGTILILLAGNHRGKRVVFLKQLDTGLLLVTGPYSVNGVPLRKVDQAYVIATSTKIDVSGVDVSKFDGKYFKKDKSKKSKKTEEDFMAVEGAEKKSEIPEGKVADQKTVDSAIMTELKKEEMLIAYLGARFSLTKGQYPHKMVF 216          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A1X6PCS6_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCS6_PORUM)

HSP 1 Score: 220 bits (560), Expect = 5.320e-69
Identity = 112/205 (54.63%), Postives = 141/205 (68.78%), Query Frame = 0
Query:   40 RRAKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            +R K    +    T+ KKIGG+KNGGERT+    G KWY AD++K PV SR+H+HKP KLR+S+  G +LILL+GR R  RV+ LG LPSG LLVTGPY+IN +P+RRVD AYVIATST +DVS VD+SK+DDAYFKR K  S  DV    E  AK    E ++ADQK V+  L+  I+K+ ++  YL S F L  G  PHE+ F
Sbjct:    8 QRVKRKAAQETTTTITKKIGGDKNGGERTITKTVGSKWYNADNVKTPVASRKHVHKPRKLRASLKPGAVLILLSGRHRAKRVVMLGSLPSGLLLVTGPYAINGVPMRRVDAAYVIATSTIVDVSGVDVSKYDDAYFKRTKKPSGVDV--DMEESAKRPVPEHKIADQKAVDAALIAEIKKDSLLKPYLSSLFTLTDGQAPHELKF 210          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A397IYP9_9GLOM (60S ribosomal protein L6 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IYP9_9GLOM)

HSP 1 Score: 196 bits (498), Expect = 3.390e-59
Identity = 109/212 (51.42%), Postives = 145/212 (68.40%), Query Frame = 0
Query:   39 RRRAKEAPTKPVLQTV-IKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVS-AVDISKFDDAYFKRVKAKSTSDVMET----DEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            R++A+   T+  ++T   K IGGEKNG ER + + K P++YPA+DI +P  SR+ ++KPTKLR +I+ GTILIL+AGR RG RV+ L QL SG LLVTGP+ IN +PLRRV+QAYVIATST +D+S A  + KFDDAYFK+ K      V E     DE + K    E R +DQK V++ +  +I+K P +  YL SRF+L RG FPH + F
Sbjct:   31 RKKAQVPKTEAKVETTKTKPIGGEKNGKERLIPLEKAPRFYPAEDIPRPKKSRK-VNKPTKLRPTITPGTILILVAGRYRGKRVVFLKQLASGLLLVTGPFRINGVPLRRVNQAYVIATSTKVDISTACPLDKFDDAYFKKAKESKKRKVTEKEFFEDEQKKKKPLPETRASDQKEVDKNITAVIKKTPHLRDYLHSRFSLSRGQFPHNLEF 241          
BLAST of Gcaud8038.t1 vs. uniprot
Match: Q9SMI5_CYAPA (60S ribosomal protein L6 n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q9SMI5_CYAPA)

HSP 1 Score: 191 bits (484), Expect = 2.040e-57
Identity = 108/216 (50.00%), Postives = 147/216 (68.06%), Query Frame = 0
Query:   38 ARR--RAKEAPTKPVLQTV---IKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKA----KSTSDVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            ARR  +AK+ PTK  +      +K+I G+KNG  RT++  K PK+YPA+D  KP+ +R    KPTKLR+SI  GT+LI+LAGR RG RV+ L QL SG LLVTGPY +N +PLRRV+Q+YVIATST +DVS VD+ KFDD YFK+ KA    K      +++E + +  P  ER  DQK V+  ++  ++K+ ++ +YL +RF L +G FPHEM F
Sbjct:    5 ARRWTKAKKQPTKKAVAAPAPKVKQIKGDKNGKTRTILP-KAPKYYPAEDTPKPL-NRHKTLKPTKLRASIVPGTVLIVLAGRYRGKRVVFLKQLASGLLLVTGPYKLNGVPLRRVNQSYVIATSTKVDVSKVDVKKFDDNYFKKPKAAAAKKGEDAFFQSEEKKKEIKP--ERKTDQKAVDASIIAAVKKDKVLRAYLHARFTLTKGQFPHEMKF 216          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A1Y1Y938_9FUNG (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y938_9FUNG)

HSP 1 Score: 191 bits (485), Expect = 2.830e-57
Identity = 103/207 (49.76%), Postives = 143/207 (69.08%), Query Frame = 0
Query:   42 AKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDI-SKFDDAYFKR---VKAKSTSDVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            A++A   P     +K + GEKNG ER V +NK  +WYPA+D+ +P  SR+ + KPTKLR++I+ GT+L+LLAGR RG RV+ L QL SG LLVTGPY +N +PLRRV+QAYV+ATST +D+S V++ +KFDDAYFK+    KAK T +    +E + K  P E R ADQK V++ ++  + + P + SYL + F L++G  PH M F
Sbjct:   35 AEKAAAAPATTKTVK-VNGEKNGSERVVSLNKASRWYPAEDVAQPKASRK-VAKPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVNVDAKFDDAYFKKEKAAKAKGTEEEFFGEEQKKKVIP-ESRSADQKSVDKEILAAVSQVPHLRSYLNASFTLRKGQAPHSMKF 238          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A0D7BU19_9AGAR (60S ribosomal protein L6 n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BU19_9AGAR)

HSP 1 Score: 189 bits (481), Expect = 1.140e-56
Identity = 107/224 (47.77%), Postives = 152/224 (67.86%), Query Frame = 0
Query:   26 TKLVLTMGLSRDARRRAKEAPTKPVLQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDIS-KFDDAYF-KRVKAKSTS---DVMETDEGEAKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            +KL    GL +  ++  K A T+P  +T+ K IGGEKNGG+RTV   K  ++YPA+D+  P  SR+ +H PT LRS+I+ GT+LILLAGR RG RV+ L  L SG LLVTGP+ IN +PLRRV+QAYVIATST++D+SA+ +  KF D+YF K  K K+TS   +  E  + + K +  E +VADQK V++ ++  ++K   ++ YL + + L +G FPH+M F
Sbjct:   17 SKLAAKRGLYKGQKKTEKIA-TEPRPETIEKSIGGEKNGGKRTVPTTKASRFYPAEDVSVPKKSRKAVHAPT-LRSTITPGTVLILLAGRFRGKRVVFLKALESGLLLVTGPFKINGVPLRRVNQAYVIATSTSVDLSALSLDEKFTDSYFTKSEKKKATSAEAEFFEEGKPKTKEALPESKVADQKTVDEAVLSAVKKSDNLSKYLSASWGLSKGQFPHQMVF 238          
BLAST of Gcaud8038.t1 vs. uniprot
Match: A0A397TD96_9GLOM (Ribosomal protein L6e-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TD96_9GLOM)

HSP 1 Score: 188 bits (478), Expect = 3.420e-56
Identity = 97/195 (49.74%), Postives = 132/195 (67.69%), Query Frame = 0
Query:   53 TVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLRSSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQAYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETDEGE---AKYSPTEERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF 244
            T  K+I G  NGGER + + K P++YPA+D+  P  SR+ ++KPTKLR+SI+ GTILILL GR RG RV+ L QL SG LLVTGP+ +N +PL+RV+QAYVIATST +D+S+  + KFDD+YFKR K            GE    K   +E R  DQK +++ L+  ++KEP    YL++RF+L +G FPH + F
Sbjct:   47 TKTKQIKGNNNGGERVIPIEKAPRFYPAEDVPHPKKSRK-VNKPTKLRASITPGTILILLTGRFRGKRVVFLNQLKSGLLLVTGPFKVNGVPLKRVNQAYVIATSTKVDISSCSVDKFDDSYFKREKEPKXXXXXXXXXGEDQNQKKVVSEARANDQKEIDKQLLDSLKKEPHFYDYLRARFSLTKGQFPHHLAF 240          
The following BLAST results are available for this feature:
BLAST of Gcaud8038.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INT1_9FLOR3.540e-12081.6960S ribosomal protein L6 n=1 Tax=Gracilariopsis ch... [more]
R7QHE3_CHOCR1.480e-8664.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
Q7XY83_GRIJA2.370e-8159.72Ribosome protein L6 n=1 Tax=Griffithsia japonica T... [more]
A0A7S3A2Q9_9RHOD6.430e-7456.68Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PCS6_PORUM5.320e-6954.63Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A397IYP9_9GLOM3.390e-5951.4260S ribosomal protein L6 n=1 Tax=Diversispora epig... [more]
Q9SMI5_CYAPA2.040e-5750.0060S ribosomal protein L6 n=1 Tax=Cyanophora parado... [more]
A0A1Y1Y938_9FUNG2.830e-5749.76Ribosomal_L6e_N domain-containing protein n=2 Tax=... [more]
A0A0D7BU19_9AGAR1.140e-5647.7760S ribosomal protein L6 n=1 Tax=Cylindrobasidium ... [more]
A0A397TD96_9GLOM3.420e-5649.74Ribosomal protein L6e-domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 101..183
e-value: 1.8E-8
score: 36.3
IPR00091560S ribosomal protein L6EPFAMPF01159Ribosomal_L6ecoord: 140..244
e-value: 1.2E-31
score: 109.5
IPR00091560S ribosomal protein L6EPANTHERPTHR1071560S RIBOSOMAL PROTEIN L6coord: 36..244
NoneNo IPR availablePANTHERPTHR10715:SF060S RIBOSOMAL PROTEIN L6coord: 36..244
IPR041997Ribosomal Protein L6, KOW domainCDDcd13156KOW_RPL6coord: 95..244
e-value: 9.47363E-78
score: 229.357
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 101..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_612_length_20883_cov_4.409052contigNODE_612_length_20883_cov_4.409052:11884..12803 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8038.t1Gcaud8038.t1Gracilaria caudata M_176_S67 malemRNANODE_612_length_20883_cov_4.409052 11884..12803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8038.t1 ID=Gcaud8038.t1|Name=Gcaud8038.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=245bp
MHWSHLDDVDHIAFPRKGDVRDLLLTKLVLTMGLSRDARRRAKEAPTKPV
LQTVIKKIGGEKNGGERTVVVNKGPKWYPADDIKKPVPSRRHIHKPTKLR
SSISAGTILILLAGRLRGSRVICLGQLPSGKLLVTGPYSINRIPLRRVDQ
AYVIATSTALDVSAVDISKFDDAYFKRVKAKSTSDVMETDEGEAKYSPTE
ERVADQKVVEQVLVPIIEKEPMMTSYLKSRFALKRGMFPHEMHF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014722Rib_L2_dom2
IPR00091560S_ribosomal_L6E
IPR041997KOW_RPL6
IPR008991Translation_prot_SH3-like_sf