Gcaud35.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud35.t1
Unique NameGcaud35.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_6129_length_1279_cov_8.408249contigNODE_6129_length_1279_cov_8.408249:2..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud35Gcaud35Gracilaria caudata M_176_S67 malegeneNODE_6129_length_1279_cov_8.408249 2..377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud35.t1.CDS1Gcaud35.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_6129_length_1279_cov_8.408249 2..377 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud35.t1.exon1Gcaud35.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_6129_length_1279_cov_8.408249 2..377 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud35.t1.stop1Gcaud35.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_6129_length_1279_cov_8.408249 375..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud35.t1Gcaud35.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_6129_length_1279_cov_8.408249 2..377 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud35.t1 ID=Gcaud35.t1|Name=Gcaud35.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=126bp
XVGATKKGRALKAMTAKKRTKAKMSTSTPLVLDEEKDDVSSMVDTETAGV
TNAETKRQGCPATDVGGDVLESSTPVSRPRHRQISSVKQLAGSKRKYRAL
NTISDEEQELGGRRRNRSLPKRYRQ*
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spliced messenger RNA

>Gcaud35.t1 ID=Gcaud35.t1|Name=Gcaud35.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp|location=Sequence derived from alignment at NODE_6129_length_1279_cov_8.408249:2..377+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGTGGGTGCTACGAAAAAAGGTCGAGCGTTGAAAGCTATGACGGCCAAAA
AGCGGACAAAGGCCAAGATGTCTACGTCAACTCCTCTAGTTTTGGACGAA
GAAAAGGATGATGTATCATCTATGGTTGACACTGAGACCGCAGGCGTTAC
GAATGCAGAAACGAAAAGACAAGGATGTCCTGCAACGGATGTTGGTGGAG
ATGTGCTGGAAAGTAGTACTCCTGTTTCGAGGCCACGACATCGCCAAATC
TCGTCCGTGAAACAGTTGGCAGGTTCTAAGAGAAAGTATCGCGCTTTGAA
CACCATTTCTGATGAGGAACAGGAGCTTGGAGGCAGGCGCAGGAACCGAA
GCCTCCCCAAGCGCTACAGACAGTGA
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protein sequence of Gcaud35.t1

>Gcaud35.t1 ID=Gcaud35.t1|Name=Gcaud35.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=126bp
XVGATKKGRALKAMTAKKRTKAKMSTSTPLVLDEEKDDVSSMVDTETAGV
TNAETKRQGCPATDVGGDVLESSTPVSRPRHRQISSVKQLAGSKRKYRAL
NTISDEEQELGGRRRNRSLPKRYRQ*
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mRNA from alignment at NODE_6129_length_1279_cov_8.408249:2..377+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud35.t1 ID=Gcaud35.t1|Name=Gcaud35.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp|location=Sequence derived from alignment at NODE_6129_length_1279_cov_8.408249:2..377+ (Gracilaria caudata M_176_S67 male)
AGTGGGTGCTACGAAAAAAGGTCGAGCGTTGAAAGCTATGACGGCCAAAA
AGCGGACAAAGGCCAAGATGTCTACGTCAACTCCTCTAGTTTTGGACGAA
GAAAAGGATGATGTATCATCTATGGTTGACACTGAGACCGCAGGCGTTAC
GAATGCAGAAACGAAAAGACAAGGATGTCCTGCAACGGATGTTGGTGGAG
ATGTGCTGGAAAGTAGTACTCCTGTTTCGAGGCCACGACATCGCCAAATC
TCGTCCGTGAAACAGTTGGCAGGTTCTAAGAGAAAGTATCGCGCTTTGAA
CACCATTTCTGATGAGGAACAGGAGCTTGGAGGCAGGCGCAGGAACCGAA
GCCTCCCCAAGCGCTACAGACAGTGA
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Coding sequence (CDS) from alignment at NODE_6129_length_1279_cov_8.408249:2..377+

>Gcaud35.t1 ID=Gcaud35.t1|Name=Gcaud35.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=376bp|location=Sequence derived from alignment at NODE_6129_length_1279_cov_8.408249:2..377+ (Gracilaria caudata M_176_S67 male)
AGTGGGTGCTACGAAAAAAGGTCGAGCGTTGAAAGCTATGACGGCCAAAA
AGCGGACAAAGGCCAAGATGTCTACGTCAACTCCTCTAGTTTTGGACGAA
GAAAAGGATGATGTATCATCTATGGTTGACACTGAGACCGCAGGCGTTAC
GAATGCAGAAACGAAAAGACAAGGATGTCCTGCAACGGATGTTGGTGGAG
ATGTGCTGGAAAGTAGTACTCCTGTTTCGAGGCCACGACATCGCCAAATC
TCGTCCGTGAAACAGTTGGCAGGTTCTAAGAGAAAGTATCGCGCTTTGAA
CACCATTTCTGATGAGGAACAGGAGCTTGGAGGCAGGCGCAGGAACCGAA
GCCTCCCCAAGCGCTACAGACAGTGA
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