Gcaud1996.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1996.t1
Unique NameGcaud1996.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:56285..56893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708955.1
PFAMsAlba
Max annot lvl2759|Eukaryota
Evalue4e-19
EggNOG OGs2CZ1U@1|root,2S7WJ@2759|Eukaryota
DescriptionAlba
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1996Gcaud1996Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 56285..56893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1Gcaud1996.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 56285..56893 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1.stop1Gcaud1996.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 56285..56287 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1.CDS1Gcaud1996.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 56285..56505 -
Gcaud1996.t1.CDS2Gcaud1996.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 56605..56893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1.exon1Gcaud1996.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 56285..56505 -
Gcaud1996.t1.exon2Gcaud1996.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 56605..56893 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1.intron1Gcaud1996.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5_length_105932_cov_4.447794 56506..56604 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1996.t1.start1Gcaud1996.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 56891..56893 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MTPSASVDTAVVDAVPENDPHQVVQIKQQAAHQQNGSTCRRIQVSREKRP
VHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRT
SLVQPTKGHSSNPKAKIQIWLTRIEQPHDDNFTNNHSHSPADDAGDTNPR
ASSPTPPNSHQANPSSQTS*
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spliced messenger RNA

>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:56285..56893- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACCTTCCGCCTCTGTCGACACCGCTGTTGTCGATGCCGTGCCGGA
GAACGATCCTCATCAGGTCGTTCAAATCAAACAACAAGCGGCTCACCAAC
AGAACGGAAGCACATGCCGACGCATTCAGGTATCGCGTGAGAAACGCCCA
GTCCATTTCTTCGTCTCTCTGGCGAAGAAGTTTCTGCATTCCGATACGCG
AATCGAGTTGAGTGGTCTGGGGTTGGCCGTCGTCAACGTTGTTACAATCG
CTGAACTCCTACGCGAAGAAAGCATTGCAACCATTGATGAGATTCGAACG
TCGTTGGTACAACCGACAAAGGGACATTCGTCCAACCCGAAGGCAAAGAT
CCAGATATGGCTCACTCGCATCGAGCAACCACACGACGATAACTTCACTA
ACAACCACTCACACTCTCCTGCCGATGACGCGGGAGACACCAACCCTCGC
GCCTCCTCCCCGACCCCACCTAACTCACATCAAGCCAACCCCTCCTCACA
AACGTCGTGA
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protein sequence of Gcaud1996.t1

>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MTPSASVDTAVVDAVPENDPHQVVQIKQQAAHQQNGSTCRRIQVSREKRP
VHFFVSLAKKFLHSDTRIELSGLGLAVVNVVTIAELLREESIATIDEIRT
SLVQPTKGHSSNPKAKIQIWLTRIEQPHDDNFTNNHSHSPADDAGDTNPR
ASSPTPPNSHQANPSSQTS*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:56285..56893-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=609bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:56285..56893- (Gracilaria caudata M_176_S67 male)
ATGACACCTTCCGCCTCTGTCGACACCGCTGTTGTCGATGCCGTGCCGGA
GAACGATCCTCATCAGGTCGTTCAAATCAAACAACAAGCGGCTCACCAAC
AGAACGGAAGCACATGCCGACGCATTCAGGTATCGCGTGAGAAACGCCCA
GTCCATTTCTTCGTCTCTCTGGCGAAGAAGTTTCTGCATTCCGATACGCG
AATCGAGTTGAGTGGTCTGGGGTTGGCCGTCGTCAACGTTGTTACAATCG
CTGAACTCCTACGCGAAGAAAGCATTGCAACCATTGATGGTACGTGCGAT
GAAAGCGTCTGCTGCCCGCCTTCACACGTTCGCATGCGCCGGTGTTCTGA
CCATTCTGTGTTTGTGTTTGTTTATGTTGTGATGACAGAGATTCGAACGT
CGTTGGTACAACCGACAAAGGGACATTCGTCCAACCCGAAGGCAAAGATC
CAGATATGGCTCACTCGCATCGAGCAACCACACGACGATAACTTCACTAA
CAACCACTCACACTCTCCTGCCGATGACGCGGGAGACACCAACCCTCGCG
CCTCCTCCCCGACCCCACCTAACTCACATCAAGCCAACCCCTCCTCACAA
ACGTCGTGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:56285..56893-

>Gcaud1996.t1 ID=Gcaud1996.t1|Name=Gcaud1996.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:56285..56893- (Gracilaria caudata M_176_S67 male)
ATGACACCTTCCGCCTCTGTCGACACCGCTGTTGTCGATGCCGTGCCGGA
GAACGATCCTCATCAGGTCGTTCAAATCAAACAACAAGCGGCTCACCAAC
AGAACGGAAGCACATGCCGACGCATTCAGGTATCGCGTGAGAAACGCCCA
GTCCATTTCTTCGTCTCTCTGGCGAAGAAGTTTCTGCATTCCGATACGCG
AATCGAGTTGAGTGGTCTGGGGTTGGCCGTCGTCAACGTTGTTACAATCG
CTGAACTCCTACGCGAAGAAAGCATTGCAACCATTGATGAGATTCGAACG
TCGTTGGTACAACCGACAAAGGGACATTCGTCCAACCCGAAGGCAAAGAT
CCAGATATGGCTCACTCGCATCGAGCAACCACACGACGATAACTTCACTA
ACAACCACTCACACTCTCCTGCCGATGACGCGGGAGACACCAACCCTCGC
GCCTCCTCCCCGACCCCACCTAACTCACATCAAGCCAACCCCTCCTCACA
AACGTCGTGA
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