Gcaud1978.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1978.t1
Unique NameGcaud1978.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:6021..6533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog136037.KDR12335
Preferred nameGOLT1B
PFAMsGot1
Max annot lvl33208|Metazoa
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.86e-47
EggNOG OGsCOG0284@1|root,KOG1743@2759|Eukaryota,3A47E@33154|Opisthokonta,3BPD7@33208|Metazoa,3D67H@33213|Bilateria,41Z7N@6656|Arthropoda,3SMFP@50557|Insecta
DescriptionIt is involved in the biological process described with vesicle-mediated transport
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1978Gcaud1978Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 6021..6533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1Gcaud1978.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 6021..6533 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1.stop1Gcaud1978.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 6021..6023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1.CDS1Gcaud1978.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 6021..6065 -
Gcaud1978.t1.CDS2Gcaud1978.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 6147..6533 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1.exon1Gcaud1978.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 6021..6065 -
Gcaud1978.t1.exon2Gcaud1978.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 6147..6533 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1.intron1Gcaud1978.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5_length_105932_cov_4.447794 6066..6146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1978.t1.start1Gcaud1978.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 6531..6533 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1978.t1 ID=Gcaud1978.t1|Name=Gcaud1978.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=144bp
MSSPFAITDVRKIGIGLTAFGLAFSVLGVALFFDKGLLAMGNVLYLSGVM
MIIGPTRSVRFFFQKRKAKASVFFFTGMAFVLFGLPMIGMAVELFGFVNL
FGDFFPVVIAFLRRAPVFGKLLGLPVVRNIADRLAGSSTKLPV*
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spliced messenger RNA

>Gcaud1978.t1 ID=Gcaud1978.t1|Name=Gcaud1978.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:6021..6533- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCGCCTTTCGCTATAACAGATGTACGAAAGATCGGAATCGGTCT
CACCGCGTTCGGTCTAGCGTTTTCTGTTCTTGGCGTTGCGCTGTTCTTCG
ATAAGGGCCTCTTGGCCATGGGCAATGTGTTGTATCTCTCTGGGGTCATG
ATGATAATTGGTCCGACTCGTTCTGTGCGCTTCTTCTTCCAGAAACGAAA
AGCAAAGGCATCTGTCTTCTTCTTCACTGGCATGGCTTTCGTGCTGTTTG
GTCTCCCGATGATTGGTATGGCCGTCGAGCTCTTTGGTTTCGTCAACTTG
TTCGGAGACTTCTTTCCTGTGGTGATTGCGTTTCTAAGAAGAGCTCCCGT
ATTTGGCAAGCTTCTCGGATTGCCTGTTGTTAGAAATATAGCCGACCGAT
TAGCGGGTTCTAGTACCAAGCTACCGGTGTAA
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protein sequence of Gcaud1978.t1

>Gcaud1978.t1 ID=Gcaud1978.t1|Name=Gcaud1978.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MSSPFAITDVRKIGIGLTAFGLAFSVLGVALFFDKGLLAMGNVLYLSGVM
MIIGPTRSVRFFFQKRKAKASVFFFTGMAFVLFGLPMIGMAVELFGFVNL
FGDFFPVVIAFLRRAPVFGKLLGLPVVRNIADRLAGSSTKLPV*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:6021..6533-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1978.t1 ID=Gcaud1978.t1|Name=Gcaud1978.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=513bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:6021..6533- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGCCTTTCGCTATAACAGATGTACGAAAGATCGGAATCGGTCT
CACCGCGTTCGGTCTAGCGTTTTCTGTTCTTGGCGTTGCGCTGTTCTTCG
ATAAGGGCCTCTTGGCCATGGGCAATGTGTTGTATCTCTCTGGGGTCATG
ATGATAATTGGTCCGACTCGTTCTGTGCGCTTCTTCTTCCAGAAACGAAA
AGCAAAGGCATCTGTCTTCTTCTTCACTGGCATGGCTTTCGTGCTGTTTG
GTCTCCCGATGATTGGTATGGCCGTCGAGCTCTTTGGTTTCGTCAACTTG
TTCGGAGACTTCTTTCCTGTGGTGATTGCGTTTCTAAGAAGAGCTCCCGT
ATTTGGCAAGCTTCTCGGATTGCCTGTTGTTAGAAATGTGCGTTCAACTT
CCCTTTCGTTGACGTCTAGGTCTATGCTGACTTTTGATCTCTTCTTCCCG
TGGTATGCGCGCATGCAGATAGCCGACCGATTAGCGGGTTCTAGTACCAA
GCTACCGGTGTAA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:6021..6533-

>Gcaud1978.t1 ID=Gcaud1978.t1|Name=Gcaud1978.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=432bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:6021..6533- (Gracilaria caudata M_176_S67 male)
ATGTCGTCGCCTTTCGCTATAACAGATGTACGAAAGATCGGAATCGGTCT
CACCGCGTTCGGTCTAGCGTTTTCTGTTCTTGGCGTTGCGCTGTTCTTCG
ATAAGGGCCTCTTGGCCATGGGCAATGTGTTGTATCTCTCTGGGGTCATG
ATGATAATTGGTCCGACTCGTTCTGTGCGCTTCTTCTTCCAGAAACGAAA
AGCAAAGGCATCTGTCTTCTTCTTCACTGGCATGGCTTTCGTGCTGTTTG
GTCTCCCGATGATTGGTATGGCCGTCGAGCTCTTTGGTTTCGTCAACTTG
TTCGGAGACTTCTTTCCTGTGGTGATTGCGTTTCTAAGAAGAGCTCCCGT
ATTTGGCAAGCTTCTCGGATTGCCTGTTGTTAGAAATATAGCCGACCGAT
TAGCGGGTTCTAGTACCAAGCTACCGGTGTAA
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