Gcaud1993.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1993.t1
Unique Name	Gcaud1993.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	523

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:44504..46072 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	70448.Q01D95
PFAMs	TPT
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K15283
KEGG TC	2.A.7.9
Evalue	8.72e-84
EggNOG OGs	KOG1441@1\|root,KOG1441@2759\|Eukaryota,37IB1@33090\|Viridiplantae,34JEM@3041\|Chlorophyta
Description	phosphate phosphoenolpyruvate translocator
COG category	EG
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1993	Gcaud1993	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 44504..46072 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1993.t1.start1	Gcaud1993.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 44504..44506 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1993.t1.CDS1	Gcaud1993.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 44504..46072 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1993.t1.exon1	Gcaud1993.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 44504..46072 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1993.t1.stop1	Gcaud1993.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 46070..46072 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1993.t1	Gcaud1993.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 44504..46072 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+

mRNA sequence

>Gcaud1993.t1 ID=Gcaud1993.t1|Name=Gcaud1993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=523bp
MAAAFVFTASPLTSFPSPRSVAVRTARFTAPRRRRHVPRAAAVGAGAGSA
QPSEPRRPDDLHLPRNVPSQPGAEDAQQHEQAEQADDAASAEPDSVSDVL
SFAQLSQPAISIDPVKKVPTSLIDASGALQIDDGSLQAVPVLPRRLVLRR
RKPLDIEFLKRQLRSGFDTGVGATVVLMLMFATWYWANTAFNVYNKQVLK
VFPYPLTCTVVQFAVAGAVMAATWLVRLKKPPKLNSFLFKAALPLACLHA
AGFLLTNMSLGKVSVAFTHTVKSTEPFFSVALTPSILGDVPTWGILASLF
PIVAGVALASLADASFNWIGFLAAIGSNLALQGRNILSKRLMDVGDKNSN
GNKRVQKPMSREEEDTLMSLDNVNLFSTMSILAFFVLLPVSLLWEGVPLF
GAAIALPAGLPVANLYTMLVLGGICRCLDVLTSYMILKRVSAVTHSVGNC
VKRAVVIVASIFFFKTKVTILSIVGTTMALLGVLFYSLIVSACKQNSFGP
DSPFCKPIYEIDELELTEGGGI*

spliced messenger RNA

>Gcaud1993.t1 ID=Gcaud1993.t1|Name=Gcaud1993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGCGTTTGTGTTCACCGCCTCGCCGCTCACTTCGTTCCCGTC
GCCACGAAGCGTTGCCGTGCGCACCGCGCGGTTTACCGCTCCGCGTCGTC
GACGGCATGTGCCCAGAGCGGCAGCTGTGggcgcgggcgccggctccgca
cagccgtctgagccgcgccggcCGGATGATCTTCATCTTCCCCGCAACGT
CCCGTCGCAGCCAGGTGCGGAAGATGCTCAGCAACACGAGCAGGCGGAAC
AGGCAGACGATGCTGCTTCGGCGGAGCCGGATTCAGTGTCGGATGTGCTG
TCGTTTGCACAGCTGTCTCAGCCGGCTATTAGCATTGATCCGGTGAAGAA
GGTGCCCACCTCTCTCATTGATGCTTCGGGCGCCTTGCAGATTGACGATG
GTTCCCTGCAGGCAGTGCCTGTTCTGCCGCGTCGGCTGGTGTTGCGACGG
AGGAAGCCTCTTGATATTGAATTCCTTAAGCGCCAGTTGCGGTCTGGATT
TGACACCGGTGTCGGAGCCACCGTCGTGTTGATGCTTATGTTCGCCACTT
GGTATTGGGCAAACACTGCCTTTAACGTGTACAACAAACAGGTGCTCAAG
GTGTTCCCATATCCCCTCACCTGCACTGTGGTTCAATTCGCAGTTGCCGG
CGCCGTTATGGCTGCTACCTGGCTTGTCCGGCTCAAGAAGCCTCCAAAGC
TCAATTCGTTCTTGTTTAAGGCCGCTTTGCCGCTGGCATGTCTTCATGCC
GCAGGTTTTTTGCTCACCAATATGTCACTGGGAAAAGTGTCCGTGGCGTT
CACACACACAGTCAAGAGTACTGAACCGTTTTTCTCTGTTGCGCTTACGC
CGTCAATTCTTGGAGATGTTCCCACCTGGGGTATTCTTGCCTCGCTGTTC
CCAATTGTTGCGGGCGTCGCATTAGCCTCATTGGCCGATGCCTCCTTCAA
TTGGATTGGATTTCTGGCCGCCATAGGCAGTAATCTGGCCTTGCAGGGTC
GCAACATATTGTCAAAACGGCTAATGGATGTTGGTGACAAAAACAGTAAT
GGAAACAAAAGAGTTCAAAAACCTATGTCAAGAGAAGAGGAAGATACGCT
CATGTCTCTTGACAACGTCAACTTGTTTTCAACAATGTCCATCCTTGCAT
TTTTCGTATTGCTTCCCGTTAGTTTGTTATGGGAAGGAGTACCACTTTTT
GGTGCGGCAATTGCACTACCAGCCGGTCTACCTGTGGCGAATTTGTATAC
TATGCTTGTGTTGGGTGGAATCTGCAGATGTCTGGACGTTTTGACCAGTT
ATATGATTCTCAAACGGGTGAGCGCTGTCACTCATTCGGTTGGAAATTGC
GTGAAGAGGGCTGTTGTCATTGTTGCTTCAATCTTCTTCTTCAAGACTAA
AGTGACTATACTCAGCATCGTCGGTACCACAATGGCTCTTCTCGGCGTTC
TGTTTTACTCGCTGATTGTTTCTGCGTGCAAGCAGAACAGCTTTGGGCCG
GATTCACCATTCTGCAAGCCAATATATGAAATCGATGAATTAGAACTGAC
GGAAGGAGGTGGTATCTAG

protein sequence of Gcaud1993.t1

>Gcaud1993.t1 ID=Gcaud1993.t1|Name=Gcaud1993.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=523bp
MAAAFVFTASPLTSFPSPRSVAVRTARFTAPRRRRHVPRAAAVGAGAGSA
QPSEPRRPDDLHLPRNVPSQPGAEDAQQHEQAEQADDAASAEPDSVSDVL
SFAQLSQPAISIDPVKKVPTSLIDASGALQIDDGSLQAVPVLPRRLVLRR
RKPLDIEFLKRQLRSGFDTGVGATVVLMLMFATWYWANTAFNVYNKQVLK
VFPYPLTCTVVQFAVAGAVMAATWLVRLKKPPKLNSFLFKAALPLACLHA
AGFLLTNMSLGKVSVAFTHTVKSTEPFFSVALTPSILGDVPTWGILASLF
PIVAGVALASLADASFNWIGFLAAIGSNLALQGRNILSKRLMDVGDKNSN
GNKRVQKPMSREEEDTLMSLDNVNLFSTMSILAFFVLLPVSLLWEGVPLF
GAAIALPAGLPVANLYTMLVLGGICRCLDVLTSYMILKRVSAVTHSVGNC
VKRAVVIVASIFFFKTKVTILSIVGTTMALLGVLFYSLIVSACKQNSFGP
DSPFCKPIYEIDELELTEGGGI*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1993.t1 ID=Gcaud1993.t1|Name=Gcaud1993.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1569bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCGCGTTTGTGTTCACCGCCTCGCCGCTCACTTCGTTCCCGTC
GCCACGAAGCGTTGCCGTGCGCACCGCGCGGTTTACCGCTCCGCGTCGTC
GACGGCATGTGCCCAGAGCGGCAGCTGTGggcgcgggcgccggctccgca
cagccgtctgagccgcgccggcCGGATGATCTTCATCTTCCCCGCAACGT
CCCGTCGCAGCCAGGTGCGGAAGATGCTCAGCAACACGAGCAGGCGGAAC
AGGCAGACGATGCTGCTTCGGCGGAGCCGGATTCAGTGTCGGATGTGCTG
TCGTTTGCACAGCTGTCTCAGCCGGCTATTAGCATTGATCCGGTGAAGAA
GGTGCCCACCTCTCTCATTGATGCTTCGGGCGCCTTGCAGATTGACGATG
GTTCCCTGCAGGCAGTGCCTGTTCTGCCGCGTCGGCTGGTGTTGCGACGG
AGGAAGCCTCTTGATATTGAATTCCTTAAGCGCCAGTTGCGGTCTGGATT
TGACACCGGTGTCGGAGCCACCGTCGTGTTGATGCTTATGTTCGCCACTT
GGTATTGGGCAAACACTGCCTTTAACGTGTACAACAAACAGGTGCTCAAG
GTGTTCCCATATCCCCTCACCTGCACTGTGGTTCAATTCGCAGTTGCCGG
CGCCGTTATGGCTGCTACCTGGCTTGTCCGGCTCAAGAAGCCTCCAAAGC
TCAATTCGTTCTTGTTTAAGGCCGCTTTGCCGCTGGCATGTCTTCATGCC
GCAGGTTTTTTGCTCACCAATATGTCACTGGGAAAAGTGTCCGTGGCGTT
CACACACACAGTCAAGAGTACTGAACCGTTTTTCTCTGTTGCGCTTACGC
CGTCAATTCTTGGAGATGTTCCCACCTGGGGTATTCTTGCCTCGCTGTTC
CCAATTGTTGCGGGCGTCGCATTAGCCTCATTGGCCGATGCCTCCTTCAA
TTGGATTGGATTTCTGGCCGCCATAGGCAGTAATCTGGCCTTGCAGGGTC
GCAACATATTGTCAAAACGGCTAATGGATGTTGGTGACAAAAACAGTAAT
GGAAACAAAAGAGTTCAAAAACCTATGTCAAGAGAAGAGGAAGATACGCT
CATGTCTCTTGACAACGTCAACTTGTTTTCAACAATGTCCATCCTTGCAT
TTTTCGTATTGCTTCCCGTTAGTTTGTTATGGGAAGGAGTACCACTTTTT
GGTGCGGCAATTGCACTACCAGCCGGTCTACCTGTGGCGAATTTGTATAC
TATGCTTGTGTTGGGTGGAATCTGCAGATGTCTGGACGTTTTGACCAGTT
ATATGATTCTCAAACGGGTGAGCGCTGTCACTCATTCGGTTGGAAATTGC
GTGAAGAGGGCTGTTGTCATTGTTGCTTCAATCTTCTTCTTCAAGACTAA
AGTGACTATACTCAGCATCGTCGGTACCACAATGGCTCTTCTCGGCGTTC
TGTTTTACTCGCTGATTGTTTCTGCGTGCAAGCAGAACAGCTTTGGGCCG
GATTCACCATTCTGCAAGCCAATATATGAAATCGATGAATTAGAACTGAC
GGAAGGAGGTGGTATCTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+

>Gcaud1993.t1 ID=Gcaud1993.t1|Name=Gcaud1993.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1569bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:44504..46072+ (Gracilaria caudata M_176_S67 male)
ATGGCTGCCGCGTTTGTGTTCACCGCCTCGCCGCTCACTTCGTTCCCGTC
GCCACGAAGCGTTGCCGTGCGCACCGCGCGGTTTACCGCTCCGCGTCGTC
GACGGCATGTGCCCAGAGCGGCAGCTGTGggcgcgggcgccggctccgca
cagccgtctgagccgcgccggcCGGATGATCTTCATCTTCCCCGCAACGT
CCCGTCGCAGCCAGGTGCGGAAGATGCTCAGCAACACGAGCAGGCGGAAC
AGGCAGACGATGCTGCTTCGGCGGAGCCGGATTCAGTGTCGGATGTGCTG
TCGTTTGCACAGCTGTCTCAGCCGGCTATTAGCATTGATCCGGTGAAGAA
GGTGCCCACCTCTCTCATTGATGCTTCGGGCGCCTTGCAGATTGACGATG
GTTCCCTGCAGGCAGTGCCTGTTCTGCCGCGTCGGCTGGTGTTGCGACGG
AGGAAGCCTCTTGATATTGAATTCCTTAAGCGCCAGTTGCGGTCTGGATT
TGACACCGGTGTCGGAGCCACCGTCGTGTTGATGCTTATGTTCGCCACTT
GGTATTGGGCAAACACTGCCTTTAACGTGTACAACAAACAGGTGCTCAAG
GTGTTCCCATATCCCCTCACCTGCACTGTGGTTCAATTCGCAGTTGCCGG
CGCCGTTATGGCTGCTACCTGGCTTGTCCGGCTCAAGAAGCCTCCAAAGC
TCAATTCGTTCTTGTTTAAGGCCGCTTTGCCGCTGGCATGTCTTCATGCC
GCAGGTTTTTTGCTCACCAATATGTCACTGGGAAAAGTGTCCGTGGCGTT
CACACACACAGTCAAGAGTACTGAACCGTTTTTCTCTGTTGCGCTTACGC
CGTCAATTCTTGGAGATGTTCCCACCTGGGGTATTCTTGCCTCGCTGTTC
CCAATTGTTGCGGGCGTCGCATTAGCCTCATTGGCCGATGCCTCCTTCAA
TTGGATTGGATTTCTGGCCGCCATAGGCAGTAATCTGGCCTTGCAGGGTC
GCAACATATTGTCAAAACGGCTAATGGATGTTGGTGACAAAAACAGTAAT
GGAAACAAAAGAGTTCAAAAACCTATGTCAAGAGAAGAGGAAGATACGCT
CATGTCTCTTGACAACGTCAACTTGTTTTCAACAATGTCCATCCTTGCAT
TTTTCGTATTGCTTCCCGTTAGTTTGTTATGGGAAGGAGTACCACTTTTT
GGTGCGGCAATTGCACTACCAGCCGGTCTACCTGTGGCGAATTTGTATAC
TATGCTTGTGTTGGGTGGAATCTGCAGATGTCTGGACGTTTTGACCAGTT
ATATGATTCTCAAACGGGTGAGCGCTGTCACTCATTCGGTTGGAAATTGC
GTGAAGAGGGCTGTTGTCATTGTTGCTTCAATCTTCTTCTTCAAGACTAA
AGTGACTATACTCAGCATCGTCGGTACCACAATGGCTCTTCTCGGCGTTC
TGTTTTACTCGCTGATTGTTTCTGCGTGCAAGCAGAACAGCTTTGGGCCG
GATTCACCATTCTGCAAGCCAATATATGAAATCGATGAATTAGAACTGAC
GGAAGGAGGTGGTATCTAG