Gcaud2002.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2002.t1
Unique Name	Gcaud2002.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	758

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:70806..73079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705591.1
PFAMs	PHM7_cyt,RSN1_7TM,RSN1_TM
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K21989
Evalue	8.19e-82
EggNOG OGs	COG5594@1\|root,KOG1134@2759\|Eukaryota
Description	ion transport
COG category	I
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2002	Gcaud2002	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 70806..73079 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2002.t1.start1	Gcaud2002.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 70806..70808 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2002.t1.CDS1	Gcaud2002.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 70806..73079 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2002.t1.exon1	Gcaud2002.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 70806..73079 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2002.t1.stop1	Gcaud2002.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 73077..73079 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2002.t1	Gcaud2002.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 70806..73079 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+

mRNA sequence

>Gcaud2002.t1 ID=Gcaud2002.t1|Name=Gcaud2002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=758bp
MALDSETGGFLMGLGIAAAAAIVLTLAFCILRTRVPDVYYHRRLLNTLKP
YDDYNGERVGLTHPPPSDSFFGWIKPLFVTPESEVARKIGLDAAMFLRFL
RTCLIILAIVGTFSVVILMPVFGTGRINDTLTEPDDPDRVSGLKIVSLAN
VPPRNGRLWVVTITEFVVAAVVMYFLRADYKAYADYRREYRNSETPVNYA
LAVLDIPEESRNEEAIRRRFELVVPGQVSEVVIMKQCAKAAKLKTKLEAA
VTKRELAEYIKSVKGVSPEFRPGFCGCMMCHKPKVDSLEYWQEEQEKLSK
ELLDAGNEAALTPSAILVLSNKRAASVLAQANVATCATAWNISRAGEPNN
INWAAFSVPSYQAEIRSIAVAAFVVVFTLFWTIPATAIASLFSLKKLSEL
DAFKWTSKIEEASPRLSQLIEGLLPVIVMSVLISLIPTLFRVVVSQERVV
SYSVVERKTRDYFYFFTVYGSFFVIVLGSAVLQDLPGIIDDPVQIIDSLA
SGVPGNGIFFATFITWQALFSLPLVMSGIVRVILRFILLKISKTERQQRK
ARTGGGLFQFFRYSGHAMLIMFLALMFTSFSPLVPLCGIVYFGVALLGFK
YMLLFSCHQPWEGGGDMYPGAYWGTVIGLVLKQVVVIAVLGLKRGPAQAI
VCIIPTIATILLSMIIAQRYQRIAEHGSLHDMFENSSKLDEIPSIYQGLY
KQPGATVPEFANLNGVEQATDTYQAPDYGTESDGLESEHPNEQVGYVPDR
AAKREEV*

spliced messenger RNA

>Gcaud2002.t1 ID=Gcaud2002.t1|Name=Gcaud2002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGACAGCGAAACCGGTGGTTTCCTTATGGGCCTTGGTATTGC
CGCTGCTGCTGCAATCGTGTTGACGCTTGCCTTTTGCATCCTGCGTACCC
GAGTTCCAGACGTTTACTACCATCGACGCTTGTTAAACACTCTCAAGCCA
TACGACGATTACAATGGCGAACGCGTCGGTCTTACGCATCCACCTCCGTC
CGACTCTTTCTTCGGATGGATCAAACCGCTTTTCGTCACTCCCGAAAGCG
AAGTCGCTCGTAAGATCGGCTTGGATGCCGCCATGTTTCTTCGTTTTCTT
CGTACATGTTTAATCATTCTTGCTATCGTCGGCACCTTCTCAGTCGTCAT
TCTCATGCCTGTGTTTGGTACCGGACGAATCAATGACACCCTTACAGAGC
CGGATGACCCCGATCGAGTATCGGGTTTGAAAATCGTCTCACTTGCAAAT
GTTCCGCCCAGGAATGGTCGATTGTGGGTTGTTACTATCACTGAGTTTGT
TGTGGCCGCCGTTGTCATGTACTTCTTGAGGGCTGATTACAAGGCGTACG
CGGACTATCGACGCGAGTATCGAAACTCTGAAACACCTGTCAACTATGCC
TTGGCTGTGCTTGATATCCCGGAAGAAAGTCGTAACGAAGAAGCCATTCG
TCGTCGATTCGAGCTTGTTGTCCCGGGTCAAGTTTCTGAAGTCGTCATCA
TGAAACAGTGTGCAAAGGCTGCCAAGCTGAAGACCAAGCTGGAAGCCGCC
GTCACCAAACGCGAGCTTGCAGAGTACATCAAGTCAGTCAAAGGAGTCAG
CCCTGAGTTCCGTCCCGGATTTTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACTCTCTGGAGTACTGGCAGGAGGAGCAGGAGAAGCTCAGCAAG
GAACTGCTTGACGCCGGTAACGAAGCTGCTCTTACTCCGTCCGCCATTCT
TGTTTTGAGCAACAAACGTGCTGCGTCCGTACTTGCACAGGCTAATGTGG
CCACTTGCGCTACTGCCTGGAACATATCTCGCGCGGGCGAGCCGAACAAT
ATCAATTGGGCGGCGTTTTCTGTTCCGAGTTATCAAGCAGAAATACGTTC
TATTGCGGTTGCTGCATTCGTCGTCGTTTTTACGTTGTTCTGGACCATTC
CTGCCACAGCTATTGCTAGTTTGTTCAGTTTGAAGAAGCTCAGTGAATTG
GACGCGTTCAAATGGACCAGCAAAATCGAGGAGGCTAGTCCTCGGCTGTC
ACAGCTAATTGAAGGTTTGCTTCCAGTCATCGTTATGTCTGTCCTCATCA
GTTTGATTCCTACTCTATTTCGGGTTGTGGTGAGCCAAGAACGTGTTGTT
TCGTACTCGGTTGTGGAAAGGAAGACAAGAGACTACTTCTATTTCTTTAC
CGTGTATGGTTCTTTCTTTGTGATTGTCCTTGGAAGTGCTGTCCTTCAAG
ATTTGCCTGGAATAATTGATGATCCGGTTCAGATCATTGACTCCTTGGCA
AGTGGTGTGCCCGGGAATGGTATATTCTTTGCGACCTTCATCACTTGGCA
GGCGCTTTTCTCGTTGCCATTGGTGATGAGTGGTATTGTGAGAGTTATTC
TTCGCTTTATCCTGCTGAAGATATCCAAGACTGAACGTCAACAACGCAAG
GCTCGCACCGGTGGTGGCTTGTTCCAATTCTTCCGCTACTCTGGGCATGC
GATGCTCATAATGTTCCTTGCGCTGATGTTCACGAGTTTCTCTCCCCTGG
TTCCTCTTTGCGGTATAGTGTATTTTGGTGTTGCACTCCTTGGGTTCAAG
TACATGTTGCTATTCAGTTGCCATCAACCTTGGGAGGGCGGAGGTGATAT
GTACCCCGGTGCCTACTGGGGTACAGTTATCGGACTCGTGCTCAAGCAAG
TGGTGGTAATTGCTGTGCTTGGTCTGAAGAGAGGGCCTGCTCAAGCAATT
GTGTGTATCATTCCCACAATTGCAACAATCCTATTGTCGATGATTATTGC
TCAGCGCTACCAGAGGATTGCTGAGCATGGAAGCTTGCATGACATGTTTG
AGAACTCATCAAAACTTGATGAAATTCCAAGCATATACCAGGGTTTGTAC
AAGCAGCCTGGTGCCACAGTCCCAGAGTTTGCAAACTTGAATGGTGTTGA
GCAAGCGACTGACACCTACCAAGCCCCAGATTATGGAACAGAAAGTGATG
GTCTTGAGTCTGAGCATCCAAACGAACAAGTCGGATACGTCCCAGATCGT
GCTGCGAAGAGAGAGGAAGTGTAA

protein sequence of Gcaud2002.t1

>Gcaud2002.t1 ID=Gcaud2002.t1|Name=Gcaud2002.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=758bp
MALDSETGGFLMGLGIAAAAAIVLTLAFCILRTRVPDVYYHRRLLNTLKP
YDDYNGERVGLTHPPPSDSFFGWIKPLFVTPESEVARKIGLDAAMFLRFL
RTCLIILAIVGTFSVVILMPVFGTGRINDTLTEPDDPDRVSGLKIVSLAN
VPPRNGRLWVVTITEFVVAAVVMYFLRADYKAYADYRREYRNSETPVNYA
LAVLDIPEESRNEEAIRRRFELVVPGQVSEVVIMKQCAKAAKLKTKLEAA
VTKRELAEYIKSVKGVSPEFRPGFCGCMMCHKPKVDSLEYWQEEQEKLSK
ELLDAGNEAALTPSAILVLSNKRAASVLAQANVATCATAWNISRAGEPNN
INWAAFSVPSYQAEIRSIAVAAFVVVFTLFWTIPATAIASLFSLKKLSEL
DAFKWTSKIEEASPRLSQLIEGLLPVIVMSVLISLIPTLFRVVVSQERVV
SYSVVERKTRDYFYFFTVYGSFFVIVLGSAVLQDLPGIIDDPVQIIDSLA
SGVPGNGIFFATFITWQALFSLPLVMSGIVRVILRFILLKISKTERQQRK
ARTGGGLFQFFRYSGHAMLIMFLALMFTSFSPLVPLCGIVYFGVALLGFK
YMLLFSCHQPWEGGGDMYPGAYWGTVIGLVLKQVVVIAVLGLKRGPAQAI
VCIIPTIATILLSMIIAQRYQRIAEHGSLHDMFENSSKLDEIPSIYQGLY
KQPGATVPEFANLNGVEQATDTYQAPDYGTESDGLESEHPNEQVGYVPDR
AAKREEV*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2002.t1 ID=Gcaud2002.t1|Name=Gcaud2002.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTCGACAGCGAAACCGGTGGTTTCCTTATGGGCCTTGGTATTGC
CGCTGCTGCTGCAATCGTGTTGACGCTTGCCTTTTGCATCCTGCGTACCC
GAGTTCCAGACGTTTACTACCATCGACGCTTGTTAAACACTCTCAAGCCA
TACGACGATTACAATGGCGAACGCGTCGGTCTTACGCATCCACCTCCGTC
CGACTCTTTCTTCGGATGGATCAAACCGCTTTTCGTCACTCCCGAAAGCG
AAGTCGCTCGTAAGATCGGCTTGGATGCCGCCATGTTTCTTCGTTTTCTT
CGTACATGTTTAATCATTCTTGCTATCGTCGGCACCTTCTCAGTCGTCAT
TCTCATGCCTGTGTTTGGTACCGGACGAATCAATGACACCCTTACAGAGC
CGGATGACCCCGATCGAGTATCGGGTTTGAAAATCGTCTCACTTGCAAAT
GTTCCGCCCAGGAATGGTCGATTGTGGGTTGTTACTATCACTGAGTTTGT
TGTGGCCGCCGTTGTCATGTACTTCTTGAGGGCTGATTACAAGGCGTACG
CGGACTATCGACGCGAGTATCGAAACTCTGAAACACCTGTCAACTATGCC
TTGGCTGTGCTTGATATCCCGGAAGAAAGTCGTAACGAAGAAGCCATTCG
TCGTCGATTCGAGCTTGTTGTCCCGGGTCAAGTTTCTGAAGTCGTCATCA
TGAAACAGTGTGCAAAGGCTGCCAAGCTGAAGACCAAGCTGGAAGCCGCC
GTCACCAAACGCGAGCTTGCAGAGTACATCAAGTCAGTCAAAGGAGTCAG
CCCTGAGTTCCGTCCCGGATTTTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACTCTCTGGAGTACTGGCAGGAGGAGCAGGAGAAGCTCAGCAAG
GAACTGCTTGACGCCGGTAACGAAGCTGCTCTTACTCCGTCCGCCATTCT
TGTTTTGAGCAACAAACGTGCTGCGTCCGTACTTGCACAGGCTAATGTGG
CCACTTGCGCTACTGCCTGGAACATATCTCGCGCGGGCGAGCCGAACAAT
ATCAATTGGGCGGCGTTTTCTGTTCCGAGTTATCAAGCAGAAATACGTTC
TATTGCGGTTGCTGCATTCGTCGTCGTTTTTACGTTGTTCTGGACCATTC
CTGCCACAGCTATTGCTAGTTTGTTCAGTTTGAAGAAGCTCAGTGAATTG
GACGCGTTCAAATGGACCAGCAAAATCGAGGAGGCTAGTCCTCGGCTGTC
ACAGCTAATTGAAGGTTTGCTTCCAGTCATCGTTATGTCTGTCCTCATCA
GTTTGATTCCTACTCTATTTCGGGTTGTGGTGAGCCAAGAACGTGTTGTT
TCGTACTCGGTTGTGGAAAGGAAGACAAGAGACTACTTCTATTTCTTTAC
CGTGTATGGTTCTTTCTTTGTGATTGTCCTTGGAAGTGCTGTCCTTCAAG
ATTTGCCTGGAATAATTGATGATCCGGTTCAGATCATTGACTCCTTGGCA
AGTGGTGTGCCCGGGAATGGTATATTCTTTGCGACCTTCATCACTTGGCA
GGCGCTTTTCTCGTTGCCATTGGTGATGAGTGGTATTGTGAGAGTTATTC
TTCGCTTTATCCTGCTGAAGATATCCAAGACTGAACGTCAACAACGCAAG
GCTCGCACCGGTGGTGGCTTGTTCCAATTCTTCCGCTACTCTGGGCATGC
GATGCTCATAATGTTCCTTGCGCTGATGTTCACGAGTTTCTCTCCCCTGG
TTCCTCTTTGCGGTATAGTGTATTTTGGTGTTGCACTCCTTGGGTTCAAG
TACATGTTGCTATTCAGTTGCCATCAACCTTGGGAGGGCGGAGGTGATAT
GTACCCCGGTGCCTACTGGGGTACAGTTATCGGACTCGTGCTCAAGCAAG
TGGTGGTAATTGCTGTGCTTGGTCTGAAGAGAGGGCCTGCTCAAGCAATT
GTGTGTATCATTCCCACAATTGCAACAATCCTATTGTCGATGATTATTGC
TCAGCGCTACCAGAGGATTGCTGAGCATGGAAGCTTGCATGACATGTTTG
AGAACTCATCAAAACTTGATGAAATTCCAAGCATATACCAGGGTTTGTAC
AAGCAGCCTGGTGCCACAGTCCCAGAGTTTGCAAACTTGAATGGTGTTGA
GCAAGCGACTGACACCTACCAAGCCCCAGATTATGGAACAGAAAGTGATG
GTCTTGAGTCTGAGCATCCAAACGAACAAGTCGGATACGTCCCAGATCGT
GCTGCGAAGAGAGAGGAAGTGTAA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+

>Gcaud2002.t1 ID=Gcaud2002.t1|Name=Gcaud2002.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2274bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:70806..73079+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTCGACAGCGAAACCGGTGGTTTCCTTATGGGCCTTGGTATTGC
CGCTGCTGCTGCAATCGTGTTGACGCTTGCCTTTTGCATCCTGCGTACCC
GAGTTCCAGACGTTTACTACCATCGACGCTTGTTAAACACTCTCAAGCCA
TACGACGATTACAATGGCGAACGCGTCGGTCTTACGCATCCACCTCCGTC
CGACTCTTTCTTCGGATGGATCAAACCGCTTTTCGTCACTCCCGAAAGCG
AAGTCGCTCGTAAGATCGGCTTGGATGCCGCCATGTTTCTTCGTTTTCTT
CGTACATGTTTAATCATTCTTGCTATCGTCGGCACCTTCTCAGTCGTCAT
TCTCATGCCTGTGTTTGGTACCGGACGAATCAATGACACCCTTACAGAGC
CGGATGACCCCGATCGAGTATCGGGTTTGAAAATCGTCTCACTTGCAAAT
GTTCCGCCCAGGAATGGTCGATTGTGGGTTGTTACTATCACTGAGTTTGT
TGTGGCCGCCGTTGTCATGTACTTCTTGAGGGCTGATTACAAGGCGTACG
CGGACTATCGACGCGAGTATCGAAACTCTGAAACACCTGTCAACTATGCC
TTGGCTGTGCTTGATATCCCGGAAGAAAGTCGTAACGAAGAAGCCATTCG
TCGTCGATTCGAGCTTGTTGTCCCGGGTCAAGTTTCTGAAGTCGTCATCA
TGAAACAGTGTGCAAAGGCTGCCAAGCTGAAGACCAAGCTGGAAGCCGCC
GTCACCAAACGCGAGCTTGCAGAGTACATCAAGTCAGTCAAAGGAGTCAG
CCCTGAGTTCCGTCCCGGATTTTGTGGATGCATGATGTGCCACAAACCCA
AGGTGGACTCTCTGGAGTACTGGCAGGAGGAGCAGGAGAAGCTCAGCAAG
GAACTGCTTGACGCCGGTAACGAAGCTGCTCTTACTCCGTCCGCCATTCT
TGTTTTGAGCAACAAACGTGCTGCGTCCGTACTTGCACAGGCTAATGTGG
CCACTTGCGCTACTGCCTGGAACATATCTCGCGCGGGCGAGCCGAACAAT
ATCAATTGGGCGGCGTTTTCTGTTCCGAGTTATCAAGCAGAAATACGTTC
TATTGCGGTTGCTGCATTCGTCGTCGTTTTTACGTTGTTCTGGACCATTC
CTGCCACAGCTATTGCTAGTTTGTTCAGTTTGAAGAAGCTCAGTGAATTG
GACGCGTTCAAATGGACCAGCAAAATCGAGGAGGCTAGTCCTCGGCTGTC
ACAGCTAATTGAAGGTTTGCTTCCAGTCATCGTTATGTCTGTCCTCATCA
GTTTGATTCCTACTCTATTTCGGGTTGTGGTGAGCCAAGAACGTGTTGTT
TCGTACTCGGTTGTGGAAAGGAAGACAAGAGACTACTTCTATTTCTTTAC
CGTGTATGGTTCTTTCTTTGTGATTGTCCTTGGAAGTGCTGTCCTTCAAG
ATTTGCCTGGAATAATTGATGATCCGGTTCAGATCATTGACTCCTTGGCA
AGTGGTGTGCCCGGGAATGGTATATTCTTTGCGACCTTCATCACTTGGCA
GGCGCTTTTCTCGTTGCCATTGGTGATGAGTGGTATTGTGAGAGTTATTC
TTCGCTTTATCCTGCTGAAGATATCCAAGACTGAACGTCAACAACGCAAG
GCTCGCACCGGTGGTGGCTTGTTCCAATTCTTCCGCTACTCTGGGCATGC
GATGCTCATAATGTTCCTTGCGCTGATGTTCACGAGTTTCTCTCCCCTGG
TTCCTCTTTGCGGTATAGTGTATTTTGGTGTTGCACTCCTTGGGTTCAAG
TACATGTTGCTATTCAGTTGCCATCAACCTTGGGAGGGCGGAGGTGATAT
GTACCCCGGTGCCTACTGGGGTACAGTTATCGGACTCGTGCTCAAGCAAG
TGGTGGTAATTGCTGTGCTTGGTCTGAAGAGAGGGCCTGCTCAAGCAATT
GTGTGTATCATTCCCACAATTGCAACAATCCTATTGTCGATGATTATTGC
TCAGCGCTACCAGAGGATTGCTGAGCATGGAAGCTTGCATGACATGTTTG
AGAACTCATCAAAACTTGATGAAATTCCAAGCATATACCAGGGTTTGTAC
AAGCAGCCTGGTGCCACAGTCCCAGAGTTTGCAAACTTGAATGGTGTTGA
GCAAGCGACTGACACCTACCAAGCCCCAGATTATGGAACAGAAAGTGATG
GTCTTGAGTCTGAGCATCCAAACGAACAAGTCGGATACGTCCCAGATCGT
GCTGCGAAGAGAGAGGAAGTGTAA