Gcaud1986.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1986.t1
Unique NameGcaud1986.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length211
Homology
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A2V3IYU2_9FLOR (18S rRNA aminocarboxypropyltransferase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYU2_9FLOR)

HSP 1 Score: 262 bits (670), Expect = 1.580e-85
Identity = 124/166 (74.70%), Postives = 144/166 (86.75%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSDDPFWGLGNSDDE 166
            MLRTLRISQ+H GVVL+P+GTRAIS++DA+LV+  GLGVVDCSWAR+DEV F+RLKSG DRLLPFL+AANP+NYGKPLRLTCAEALAGGL+IMGF +SA QVL KF WGDSFW++N +LLE+Y  C  SEEVV VQNAYI  CE+EVEERK+ DDPFWG  +  DE
Sbjct:   65 MLRTLRISQKHHGVVLSPMGTRAISRSDAALVQEAGLGVVDCSWARIDEVPFNRLKSGTDRLLPFLVAANPINYGKPLRLTCAEALAGGLFIMGFVDSARQVLEKFAWGDSFWKVNEELLEKYSRCETSEEVVGVQNAYIKTCEQEVEERKKHDDPFWGSEDEADE 230          
BLAST of Gcaud1986.t1 vs. uniprot
Match: R7Q6P0_CHOCR (18S rRNA aminocarboxypropyltransferase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6P0_CHOCR)

HSP 1 Score: 204 bits (520), Expect = 1.120e-62
Identity = 100/164 (60.98%), Postives = 127/164 (77.44%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSD-DPFWGLGNS 163
            ++R++R +   PGVVL+P G  AIS+ DA ++ S GLGVVDCSWAR+DEV FDRL+SGADRLLPFLIAANPVNYGKPLRL+CAEALA  L+I GF   A  V++KFVWGD F+ LN +LL+ Y +C   +EVV+VQN YI  CE+EV ERK+ + +PF  + +S
Sbjct:   22 IVRSVRPTTSIPGVVLSPQGANAISREDAPMIASAGLGVVDCSWARLDEVPFDRLRSGADRLLPFLIAANPVNYGKPLRLSCAEALAAALHIAGFGEEARNVMAKFVWGDGFFTLNKELLDAYADCKNGKEVVSVQNEYIETCEREVRERKEREYNPFPDMTSS 185          
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A1X2IIL5_9FUNG (18S rRNA aminocarboxypropyltransferase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IIL5_9FUNG)

HSP 1 Score: 177 bits (448), Expect = 5.300e-52
Identity = 83/154 (53.90%), Postives = 112/154 (72.73%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSD 154
            ML+TL++SQR  G+V +PVG +A+S  D S+VE  G GVVDCSWAR+DEV F ++K   DRLLP+L+A NPVNYGKP +L CAEALA   Y+ GF +    ++SKF WG +F+++N  LL +Y  C  S EVVAVQN Y+A+ E++ E RK+ +
Sbjct:   26 MLKTLKLSQRFRGIVASPVGEKAVSPADRSIVEQYGAGVVDCSWARIDEVPFTKIKGPTDRLLPYLVATNPVNYGKPWKLNCAEALAAIFYVTGFPDHGEALMSKFKWGHAFYKVNAGLLNRYAKCKDSTEVVAVQNEYLASLEED-ERRKEKE 178          
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A168NCS2_ABSGL (18S rRNA aminocarboxypropyltransferase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168NCS2_ABSGL)

HSP 1 Score: 177 bits (449), Expect = 2.060e-51
Identity = 83/154 (53.90%), Postives = 112/154 (72.73%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSD 154
            ML+TL++SQR  G+V +PVG +A+S  D S+VE  G GVVDCSWAR+DEV F +++  +DRLLP+L+A NPVNYGKP +L CAEALA   Y+ GF +    ++SKF WG +F+++N  LL +Y  C  S EVVAVQN Y+A+ E++ E RK  D
Sbjct:   61 MLKTLKLSQRFRGIVASPVGEKAVSPADRSIVEQYGAGVVDCSWARIDEVPFSKIRGPSDRLLPYLVATNPVNYGKPWKLNCAEALAAIFYVTGFPDHGEALMSKFKWGHAFYKVNAGLLNRYAKCKDSTEVVAVQNEYLASLEED-ERRKDKD 213          
BLAST of Gcaud1986.t1 vs. uniprot
Match: UPI0006D4EE9B (ribosome biogenesis protein TSR3 homolog n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EE9B)

HSP 1 Score: 173 bits (439), Expect = 7.550e-51
Identity = 80/155 (51.61%), Postives = 108/155 (69.68%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSDD 155
            M++TLR+ QR  G+VL+P+G + IS  D  +VE  G  VVDCSWA+++E  F+++K+   RLLPFL+AANP+NYGKP++L+C EALA   YI GF   A   LS+F WGDSF  LN +LL++Y  C   EEVV  QNAY+A C++E   R  + D
Sbjct:   69 MIKTLRLQQRFNGIVLSPMGIKCISPLDKEIVERFGAAVVDCSWAKIEETPFEQMKTSNPRLLPFLVAANPINYGKPIKLSCVEALAALFYITGFQEEAEHYLSQFTWGDSFIHLNQELLDRYAACKDGEEVVMAQNAYLAECDEERNRRTLTPD 223          
BLAST of Gcaud1986.t1 vs. uniprot
Match: F1A507_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A507_DICPU)

HSP 1 Score: 171 bits (433), Expect = 7.670e-51
Identity = 75/145 (51.72%), Postives = 105/145 (72.41%), Query Frame = 0
Query:    2 LRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKE 146
            ++++ ++ +  G+VLTP   ++IS  D  +V+  G+ VVDCSWA++D + F +++ G DRLLPFLIAANPVNYGKP +LTC EA+A  L+I GF    HQ+L  F WG SF+++N DLLEQY+ C  S+EVV VQN +I  CE+E
Sbjct:   25 IKSINLTHKFKGIVLTPSAKQSISPADKDIVQQLGVSVVDCSWAKLDTIPFGKMRGGHDRLLPFLIAANPVNYGKPFKLTCVEAVAACLFITGFIQEGHQILGGFKWGSSFYKVNRDLLEQYQKCTSSQEVVNVQNEFIKKCEEE 169          
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A0L0HU98_SPIPD (18S rRNA aminocarboxypropyltransferase n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HU98_SPIPD)

HSP 1 Score: 175 bits (444), Expect = 7.950e-51
Identity = 76/152 (50.00%), Postives = 110/152 (72.37%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQ 152
            ++RTL+I QR  G+VL+P GT+++S  D S++E  GL VVDCSWAR++EV F++++S  +RLLP+L+AANPVNYGKP +L C EALA   +I G     H +LSKF WG +FW++NG L E+Y++C  S EVV  QN Y+    +E ++ ++
Sbjct:   50 LIRTLKIGQRFKGIVLSPKGTQSVSPADRSIIEGAGLCVVDCSWARIEEVPFEKIRSPHERLLPYLVAANPVNYGKPFKLNCVEALAACFFITGLDEHGHTLLSKFKWGHAFWEINGALFEKYKSCRSSAEVVETQNEYLQQINQEYKDHRE 201          
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A367JD18_RHIAZ (18S rRNA aminocarboxypropyltransferase n=5 Tax=Rhizopus TaxID=4842 RepID=A0A367JD18_RHIAZ)

HSP 1 Score: 174 bits (441), Expect = 3.180e-50
Identity = 86/167 (51.50%), Postives = 114/167 (68.26%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSDDPFWGLGNSDDEE 167
            ML TL++ QR  G+V +PVG +A+S  D  +VE  G GVVDCSWAR+DEV F +++   DRLLP+L+A NPVNYGKP +L CAEALA   YI GF     ++LSKF WG +F ++NG LL +Y  C  S EVVAVQN Y+A  + E +ER +      GL +SD+++
Sbjct:   92 MLTTLKLGQRFRGIVASPVGEKAVSPADRKIVEMYGAGVVDCSWARIDEVPFTKIRGPTDRLLPYLVATNPVNYGKPWKLNCAEALAAIFYITGFPEHGEELLSKFKWGHAFKKVNGGLLSRYAKCKDSTEVVAVQNEYLA--QLEADERSKEASKTEGLDDSDNDD 256          
BLAST of Gcaud1986.t1 vs. uniprot
Match: A0A8H7BR99_9FUNG (18S rRNA aminocarboxypropyltransferase n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BR99_9FUNG)

HSP 1 Score: 172 bits (436), Expect = 3.220e-50
Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 0
Query:    1 MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERK--QSDDPFWGLGNSD 164
            ML+TL++SQR  G+V +PVG +A+S  D S+VE  G  VVDCSWAR+DEV F +++  +DRLLP+L+A NPVNYGKP +L CAEALA   YI GF      +L+KF WG +F ++NG LL +Y  C  S EVV+VQN Y+   E+E   RK  Q+ +   G G SD
Sbjct:   26 MLKTLKLSQRFRGIVASPVGEKAVSPADRSIVEMYGAAVVDCSWARIDEVPFSKIRGPSDRLLPYLVATNPVNYGKPWKLNCAEALAAIFYITGFPEHGEALLAKFKWGHAFKKVNGGLLAKYAKCKDSTEVVSVQNEYLRQLEEEDNRRKNEQASNNITGDGLSD 191          
BLAST of Gcaud1986.t1 vs. uniprot
Match: Q55G49_DICDI (18S rRNA aminocarboxypropyltransferase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55G49_DICDI)

HSP 1 Score: 175 bits (444), Expect = 4.140e-50
Identity = 87/183 (47.54%), Postives = 123/183 (67.21%), Query Frame = 0
Query:    2 LRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEVSFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAHQVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEERKQSDD-PFWGL----------GNSDDEESRSEDY 173
            ++++ ++ +  G+VLTP   ++IS  D  +V++ G+ VVDCSWA+VD + F ++K G DRLLPFLIAANPVNYGKP +LTC EA+A  L+I GFT   HQVL  F WG SF+++N DL E+Y  C  S+EVV +QN +IA CE++ ++R  + +   +GL           N DDEE+  EDY
Sbjct:   89 VKSINLTHKFKGIVLTPSAKQSISPADRDIVQNLGVSVVDCSWAKVDSIPFGKMKGGHDRLLPFLIAANPVNYGKPFKLTCVEAVAACLFITGFTAEGHQVLGGFKWGSSFYKVNKDLFEKYILCANSQEVVQIQNEFIAKCEQDQKDRAANIEYDEFGLQLNPNRILRTNNDDDEENGDEDY 271          
The following BLAST results are available for this feature:
BLAST of Gcaud1986.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYU2_9FLOR1.580e-8574.7018S rRNA aminocarboxypropyltransferase n=1 Tax=Gra... [more]
R7Q6P0_CHOCR1.120e-6260.9818S rRNA aminocarboxypropyltransferase n=1 Tax=Cho... [more]
A0A1X2IIL5_9FUNG5.300e-5253.9018S rRNA aminocarboxypropyltransferase n=1 Tax=Abs... [more]
A0A168NCS2_ABSGL2.060e-5153.9018S rRNA aminocarboxypropyltransferase n=1 Tax=Abs... [more]
UPI0006D4EE9B7.550e-5151.61ribosome biogenesis protein TSR3 homolog n=1 Tax=H... [more]
F1A507_DICPU7.670e-5151.72Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A0L0HU98_SPIPD7.950e-5150.0018S rRNA aminocarboxypropyltransferase n=2 Tax=Spi... [more]
A0A367JD18_RHIAZ3.180e-5051.5018S rRNA aminocarboxypropyltransferase n=5 Tax=Rhi... [more]
A0A8H7BR99_9FUNG3.220e-5051.8118S rRNA aminocarboxypropyltransferase n=1 Tax=Apo... [more]
Q55G49_DICDI4.140e-5047.5418S rRNA aminocarboxypropyltransferase n=1 Tax=Dic... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR00717716S/18S rRNA aminocarboxypropyltransferase Tsr3, C-terminalPFAMPF04034Ribo_biogen_Ccoord: 14..140
e-value: 9.5E-51
score: 170.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 162..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..178
IPR02296816S/18S rRNA aminocarboxypropyltransferase Tsr3PANTHERPTHR20426RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOGcoord: 1..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:22697..23329 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1986.t1Gcaud1986.t1Gracilaria caudata M_176_S67 malemRNANODE_5_length_105932_cov_4.447794 22697..23329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1986.t1 ID=Gcaud1986.t1|Name=Gcaud1986.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=211bp
MLRTLRISQRHPGVVLTPVGTRAISKTDASLVESCGLGVVDCSWARVDEV
SFDRLKSGADRLLPFLIAANPVNYGKPLRLTCAEALAGGLYIMGFTNSAH
QVLSKFVWGDSFWQLNGDLLEQYRNCNKSEEVVAVQNAYIAACEKEVEER
KQSDDPFWGLGNSDDEESRSEDYGADVESEVDKEVCNANVEIMLDAMRVT
TDEGEVHSRN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007177Tsr3_C
IPR022968Tsr3-like