Gcaud2009.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2009.t1
Unique Name	Gcaud2009.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:87124..88620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3712.Bo4g017310.1
PFAMs	Metallophos,PPP5,TPR_1,TPR_11,TPR_8
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K04460
KEGG Pathway	ko04010,map04010
GOs	GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005911,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0019538,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046686,GO:0046906,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051171,GO:0051172,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0065007,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071704,GO:0090056,GO:0097159,GO:0098827,GO:0104004,GO:0140096,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1902325
Evalue	1.89e-175
EggNOG OGs	COG0639@1\|root,KOG0376@2759\|Eukaryota,37IEQ@33090\|Viridiplantae,3GC8Z@35493\|Streptophyta,3HQHC@3699\|Brassicales
EC	3.1.3.16
Description	PPP5 TPR repeat region
COG category	U
BRITE	ko00000,ko00001,ko01000,ko01009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2009	Gcaud2009	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 87124..88620 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2009.t1.start1	Gcaud2009.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 87124..87126 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2009.t1.CDS1	Gcaud2009.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 87124..88620 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2009.t1.exon1	Gcaud2009.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 87124..88620 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2009.t1.stop1	Gcaud2009.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 88618..88620 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2009.t1	Gcaud2009.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 87124..88620 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+

mRNA sequence

>Gcaud2009.t1 ID=Gcaud2009.t1|Name=Gcaud2009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=499bp
MNADVLCEEKLDPVNQLKKQANQCFKSNRFHEAEELYTLALKQASTLEAD
GKTQAVLLGNRAFTRLKLEQYGFAINDATSALSHDPNYIKAYYRRGSAYF
ALSKYKDAKRDYAIIAQRIPENKDTAAKLRECEKRIKEAAFAKAIESDSL
RVRVCDTIDVASMQVPDSYEGPRIQPDGEITEQFVRDLIECFRKQKSLHV
KYAAMIVLAAKKIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLANAIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAIHLTRGNHE
SLNMNRIYGFEGEVRVKYTETIFNLFTETFQSLPLAYILDGSSTPDGRKA
FVVHGGLFSKDGVTIADINALNRKCEPDSGLMAEMLWSDPQEENGWGPSK
RGIGVAFGPDVTYRFLELNGLDIVVRSHEMKDAGFEVSANGRLITIFSAP
NYCDQMGNQGAYIRFKSDMEPSFVQFGAVPHPHVPPMQYASKLLMGSQ*

spliced messenger RNA

>Gcaud2009.t1 ID=Gcaud2009.t1|Name=Gcaud2009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCGGACGTGTTGTGTGAGGAAAAGCTCGACCCTGTCAATCAGCT
CAAGAAGCAGGCCAATCAATGCTTTAAGTCCAACCGCTTTCATGAGGCCG
AGGAACTCTACACCCTTGCGCTCAAGCAGGCTTCCACTCTAGAGGCTGAC
GGTAAAACCCAGGCCGTCTTGCTGGGCAATCGCGCGTTCACTAGACTTAA
GCTGGAGCAGTATGGATTCGCCATCAATGACGCCACCAGCGCTCTTTCGC
ACGATCCTAACTATATCAAGGCTTACTATCGCCGCGGAAGTGCTTATTTT
GCACTCAGCAAGTACAAGGACGCTAAGAGAGACTACGCTATCATTGCGCA
GAGAATTCCTGAAAACAAGGACACAGCCGCCAAGCTCAGGGAATGTGAAA
AGAGAATCAAGGAGGCTGCGTTTGCAAAGGCCATCGAAAGCGACTCGTTG
CGCGTCCGCGTCTGTGATACTATCGATGTCGCTTCCATGCAGGTGCCAGA
CTCTTATGAAGGGCCTCGAATACAACCCGATGGCGAGATCACTGAACAGT
TTGTGCGCGATCTCATCGAATGCTTCCGTAAGCAGAAGAGCTTGCACGTC
AAGTATGCTGCAATGATCGTGCTTGCCGCCAAGAAGATATTTGATCAATT
GCCCAACGTGGTTGAGTTGCCTGTCACCGCGGGCAACTCTATCACCGTCT
GTGGCGATGTTCATGGACAGTACTATGATTTGGCAAATGCCATTTTCGAA
CGCAATGGACTGCCGAGTGCGAAGAACCCGTACTTGTTTAACGGTGATTT
TGTGGATAGAGGATCCTTCAGCGTTGAGGTCATCCTCACTTTGTTGGCTT
TCAAGGCGTGGTGTCCCGAGGCCATACATCTCACACGCGGTAATCATGAG
TCGCTCAACATGAATCGCATTTACGGCTTTGAAGGCGAAGTAAGAGTCAA
GTATACCGAGACCATCTTCAATTTGTTCACTGAGACTTTTCAGAGCTTGC
CTTTGGCATATATTCTGGACGGAAGCAGCACGCCTGATGGACGAAAGGCT
TTCGTAGTACACGGTGGTCTGTTCTCAAAAGATGGCGTAACCATTGCAGA
CATAAACGCACTCAACCGAAAATGTGAGCCCGATTCGGGACTCATGGCCG
AAATGCTCTGGAGTGATCCGCAGGAGGAAAATGGCTGGGGTCCCTCGAAG
AGAGGCATTGGTGTGGCATTTGGCCCCGATGTCACATACCGCTTTTTGGA
GCTCAATGGTCTAGACATCGTCGTCAGGTCTCATGAAATGAAGGATGCCG
GTTTTGAAGTATCTGCGAATGGCCGACTAATAACAATTTTCTCTGCTCCT
AACTACTGTGACCAGATGGGAAACCAAGGTGCCTATATCCGATTTAAGTC
TGACATGGAGCCTTCTTTCGTCCAATTTGGGGCCGTACCACATCCGCATG
TTCCCCCGATGCAGTATGCGTCTAAGCTGCTTATGGGATCTCAGTGA

protein sequence of Gcaud2009.t1

>Gcaud2009.t1 ID=Gcaud2009.t1|Name=Gcaud2009.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=499bp
MNADVLCEEKLDPVNQLKKQANQCFKSNRFHEAEELYTLALKQASTLEAD
GKTQAVLLGNRAFTRLKLEQYGFAINDATSALSHDPNYIKAYYRRGSAYF
ALSKYKDAKRDYAIIAQRIPENKDTAAKLRECEKRIKEAAFAKAIESDSL
RVRVCDTIDVASMQVPDSYEGPRIQPDGEITEQFVRDLIECFRKQKSLHV
KYAAMIVLAAKKIFDQLPNVVELPVTAGNSITVCGDVHGQYYDLANAIFE
RNGLPSAKNPYLFNGDFVDRGSFSVEVILTLLAFKAWCPEAIHLTRGNHE
SLNMNRIYGFEGEVRVKYTETIFNLFTETFQSLPLAYILDGSSTPDGRKA
FVVHGGLFSKDGVTIADINALNRKCEPDSGLMAEMLWSDPQEENGWGPSK
RGIGVAFGPDVTYRFLELNGLDIVVRSHEMKDAGFEVSANGRLITIFSAP
NYCDQMGNQGAYIRFKSDMEPSFVQFGAVPHPHVPPMQYASKLLMGSQ*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2009.t1 ID=Gcaud2009.t1|Name=Gcaud2009.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+ (Gracilaria caudata M_176_S67 male)
ATGAATGCGGACGTGTTGTGTGAGGAAAAGCTCGACCCTGTCAATCAGCT
CAAGAAGCAGGCCAATCAATGCTTTAAGTCCAACCGCTTTCATGAGGCCG
AGGAACTCTACACCCTTGCGCTCAAGCAGGCTTCCACTCTAGAGGCTGAC
GGTAAAACCCAGGCCGTCTTGCTGGGCAATCGCGCGTTCACTAGACTTAA
GCTGGAGCAGTATGGATTCGCCATCAATGACGCCACCAGCGCTCTTTCGC
ACGATCCTAACTATATCAAGGCTTACTATCGCCGCGGAAGTGCTTATTTT
GCACTCAGCAAGTACAAGGACGCTAAGAGAGACTACGCTATCATTGCGCA
GAGAATTCCTGAAAACAAGGACACAGCCGCCAAGCTCAGGGAATGTGAAA
AGAGAATCAAGGAGGCTGCGTTTGCAAAGGCCATCGAAAGCGACTCGTTG
CGCGTCCGCGTCTGTGATACTATCGATGTCGCTTCCATGCAGGTGCCAGA
CTCTTATGAAGGGCCTCGAATACAACCCGATGGCGAGATCACTGAACAGT
TTGTGCGCGATCTCATCGAATGCTTCCGTAAGCAGAAGAGCTTGCACGTC
AAGTATGCTGCAATGATCGTGCTTGCCGCCAAGAAGATATTTGATCAATT
GCCCAACGTGGTTGAGTTGCCTGTCACCGCGGGCAACTCTATCACCGTCT
GTGGCGATGTTCATGGACAGTACTATGATTTGGCAAATGCCATTTTCGAA
CGCAATGGACTGCCGAGTGCGAAGAACCCGTACTTGTTTAACGGTGATTT
TGTGGATAGAGGATCCTTCAGCGTTGAGGTCATCCTCACTTTGTTGGCTT
TCAAGGCGTGGTGTCCCGAGGCCATACATCTCACACGCGGTAATCATGAG
TCGCTCAACATGAATCGCATTTACGGCTTTGAAGGCGAAGTAAGAGTCAA
GTATACCGAGACCATCTTCAATTTGTTCACTGAGACTTTTCAGAGCTTGC
CTTTGGCATATATTCTGGACGGAAGCAGCACGCCTGATGGACGAAAGGCT
TTCGTAGTACACGGTGGTCTGTTCTCAAAAGATGGCGTAACCATTGCAGA
CATAAACGCACTCAACCGAAAATGTGAGCCCGATTCGGGACTCATGGCCG
AAATGCTCTGGAGTGATCCGCAGGAGGAAAATGGCTGGGGTCCCTCGAAG
AGAGGCATTGGTGTGGCATTTGGCCCCGATGTCACATACCGCTTTTTGGA
GCTCAATGGTCTAGACATCGTCGTCAGGTCTCATGAAATGAAGGATGCCG
GTTTTGAAGTATCTGCGAATGGCCGACTAATAACAATTTTCTCTGCTCCT
AACTACTGTGACCAGATGGGAAACCAAGGTGCCTATATCCGATTTAAGTC
TGACATGGAGCCTTCTTTCGTCCAATTTGGGGCCGTACCACATCCGCATG
TTCCCCCGATGCAGTATGCGTCTAAGCTGCTTATGGGATCTCAGTGA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+

>Gcaud2009.t1 ID=Gcaud2009.t1|Name=Gcaud2009.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1497bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:87124..88620+ (Gracilaria caudata M_176_S67 male)
ATGAATGCGGACGTGTTGTGTGAGGAAAAGCTCGACCCTGTCAATCAGCT
CAAGAAGCAGGCCAATCAATGCTTTAAGTCCAACCGCTTTCATGAGGCCG
AGGAACTCTACACCCTTGCGCTCAAGCAGGCTTCCACTCTAGAGGCTGAC
GGTAAAACCCAGGCCGTCTTGCTGGGCAATCGCGCGTTCACTAGACTTAA
GCTGGAGCAGTATGGATTCGCCATCAATGACGCCACCAGCGCTCTTTCGC
ACGATCCTAACTATATCAAGGCTTACTATCGCCGCGGAAGTGCTTATTTT
GCACTCAGCAAGTACAAGGACGCTAAGAGAGACTACGCTATCATTGCGCA
GAGAATTCCTGAAAACAAGGACACAGCCGCCAAGCTCAGGGAATGTGAAA
AGAGAATCAAGGAGGCTGCGTTTGCAAAGGCCATCGAAAGCGACTCGTTG
CGCGTCCGCGTCTGTGATACTATCGATGTCGCTTCCATGCAGGTGCCAGA
CTCTTATGAAGGGCCTCGAATACAACCCGATGGCGAGATCACTGAACAGT
TTGTGCGCGATCTCATCGAATGCTTCCGTAAGCAGAAGAGCTTGCACGTC
AAGTATGCTGCAATGATCGTGCTTGCCGCCAAGAAGATATTTGATCAATT
GCCCAACGTGGTTGAGTTGCCTGTCACCGCGGGCAACTCTATCACCGTCT
GTGGCGATGTTCATGGACAGTACTATGATTTGGCAAATGCCATTTTCGAA
CGCAATGGACTGCCGAGTGCGAAGAACCCGTACTTGTTTAACGGTGATTT
TGTGGATAGAGGATCCTTCAGCGTTGAGGTCATCCTCACTTTGTTGGCTT
TCAAGGCGTGGTGTCCCGAGGCCATACATCTCACACGCGGTAATCATGAG
TCGCTCAACATGAATCGCATTTACGGCTTTGAAGGCGAAGTAAGAGTCAA
GTATACCGAGACCATCTTCAATTTGTTCACTGAGACTTTTCAGAGCTTGC
CTTTGGCATATATTCTGGACGGAAGCAGCACGCCTGATGGACGAAAGGCT
TTCGTAGTACACGGTGGTCTGTTCTCAAAAGATGGCGTAACCATTGCAGA
CATAAACGCACTCAACCGAAAATGTGAGCCCGATTCGGGACTCATGGCCG
AAATGCTCTGGAGTGATCCGCAGGAGGAAAATGGCTGGGGTCCCTCGAAG
AGAGGCATTGGTGTGGCATTTGGCCCCGATGTCACATACCGCTTTTTGGA
GCTCAATGGTCTAGACATCGTCGTCAGGTCTCATGAAATGAAGGATGCCG
GTTTTGAAGTATCTGCGAATGGCCGACTAATAACAATTTTCTCTGCTCCT
AACTACTGTGACCAGATGGGAAACCAAGGTGCCTATATCCGATTTAAGTC
TGACATGGAGCCTTCTTTCGTCCAATTTGGGGCCGTACCACATCCGCATG
TTCCCCCGATGCAGTATGCGTCTAAGCTGCTTATGGGATCTCAGTGA