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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708789.1 |
| Preferred name | SPG21 |
| PFAMs | Abhydrolase_1 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K19367 |
| KEGG Pathway | ko04144,map04144 |
| GOs | GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005829,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009987,GO:0012505,GO:0023052,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0031410,GO:0031982,GO:0042609,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050896,GO:0051716,GO:0065007,GO:0097708 |
| Evalue | 1.37e-80 |
| EggNOG OGs | 28HE8@1|root,2QPSD@2759|Eukaryota |
| Description | Spastic paraplegia 21 (Autosomal recessive, Mast syndrome) |
| COG category | S |
| BRITE | ko00000,ko00001 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1982.t1.stop1 | Gcaud1982.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_5_length_105932_cov_4.447794 11819..11821 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud1982.t1.start1 | Gcaud1982.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_5_length_105932_cov_4.447794 14261..14263 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud1982.t1 ID=Gcaud1982.t1|Name=Gcaud1982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=815bp MELTYSQPYANFRAWVPRNRLPIGHSNPNQWIYYDWGPRSYPEPIICLHS LIGSAESYFYQLIELAPLGYRVLTVHIPVYWSVPEFCDALHIFLETLSIR RAHFYGAGLGGFLALHYAARRPERVVSLILTHSFLSTANLNLPIPYSVSV LKWLPSFLVQSTMRAILPRGRTTVQLANAAEFAIGHTLRCNRETLASRLA LSLSTTSVIDRILVPGQRITLIDTLDRSPAALQLSDDTASQLPRARRALL KRGADFPYLSVPEDVNVHLVVHMRRNAPKPGGPVPVPPPAKPRPLPPSIL RRKNKREMERQAAASLEEIERRAHSAVQQVEALNLQRFKQQIAHLKDHLP ERDEAFLAAVMNHCEGDLDLAIINVRNNIYDDAFYDNYKKEAFKSACEAI REEENQKHPIETNRKEESNDASKDQAMEADGERMVSGGTGSHKDRSEDGD SVSSSTGGHPLGGRHASSSKANVPDVLVPDESERLAQQTSSEEHDAIPIP ALHSSIQDVQDTAVNDDAPDKDGEPLQTRLSSMETIIREEVDVDYTSSST GRDSPVERDSRKLSRSSSRTHRRARCRPYSVDEEGLNDYVSSEKVGMRST GTFVGRGPAPLRNYSESTITGDWMRAPLQPREEDEDGEEDEDEGRGKGGG NFEPASGASLLDADEDPLELPKHSSPRSPGDRRRGIYRSRSKSSVRQYAQ GNGSTRDPRSFSWKSMFPKETEVDPSAGDKQPDRGEDMQNPSKGAVFGKA TGDEWDSYRSGEDPLVSAGEMDPLEENGGEGLGPEVSLEKGSEEQERLRA WRMSAEEASSSVRR* back to topspliced messenger RNA >Gcaud1982.t1 ID=Gcaud1982.t1|Name=Gcaud1982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..14263- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGCTGACCTACTCGCAGCCGTACGCCAACTTCCGTGCATGGGTTCC GCGTAATCGTCTGCCTATCGGCCATTCTAACCCCAACCAGTGGATTTATT ACGACTGGGGTCCACGCTCCTATCCCGAGCCCATCATATGTCTGCACTCG CTCATCGGCTCTGCGGAATCCTACTTCTACCAGCTTATAGAACTAGCACC TCTGGGTTATCGCGTTCTCACCGTGCACATCCCGGTATACTGGTCCGTGC CGGAATTTTGCGATGCGCTGCACATCTTCTTGGAGACTCTCTCTATCCGC AGAGCTCATTTTTATGGCGCGGGGCTAGGCGGTTTCTTGGCGCTGCACTA TGCCGCTCGACGTCCGGAACGCGTTGTGTCGCTTATTCTTACGCACTCTT TTCTTTCTACGGCCAATCTTAACTTACCTATTCCGTACTCGGTTTCTGTT CTAAAGTGGTTACCTAGCTTTTTGGTGCAAAGTACCATGCGAGCCATCCT GCCAAGGGGGCGAACTACCGTGCAACTAGCGAATGCTGCCGAGTTCGCAA TAGGACATACCCTTCGGTGCAACCGTGAAACCCTTGCGTCTCGCCTCGCA CTCTCTTTATCCACCACTTCCGTGATCGATAGGATACTTGTTCCAGGGCA GCGAATTACCTTAATTGACACTCTAGACCGCTCCCCTGCAGCCCTTCAGT TATCAGATGATACCGCTTCCCAGTTACCTCGGGCAAGGAGAGCGCTTCTG AAACGCGGTGCAGATTTCCCATACCTTTCAGTTCCTGAGGACGTCAATGT TCACCTTGTGGTTCACATGCGCCGCAATGCACCCAAACCTGGCGGGCCTG TACCAGTCCCACCTCCGGCAAAGCCAAGGCCCCTTCCGCCTTCTATATTG CGCAGAAAGAACAAGAGGGAGATGGAAAGACAGGCTGCAGCGTCATTGGA AGAAATCGAAAGAAGAGCTCACTCTGCTGTCCAACAAGTAGAAGCGCTAA ATCTTCAACGCTTCAAACAACAGATTGCCCATTTGAAAGACCACTTACCT GAAAGAGACGAGGCATTTCTTGCAGCTGTTATGAACCACTGCGAAGGAGA TCTCGATCTTGCCATTATAAACGTTCGGAATAACATATATGATGATGCCT TTTATGACAACTACAAAAAGGAAGCATTCAAGAGCGCCTGTGAAGCCATT CGGGAAGAAGAGAATCAGAAACACCCAATTGAAACGAACCGAAAAGAAGA ATCGAATGATGCGTCCAAGGATCAAGCAATGGAAGCAGACGGGGAGCGCA TGGTATCTGGTGGTACCGGTAGTCATAAGGACCGCAGTGAAGATGGTGAC TCTGTTTCTTCAAGTACAGGGGGGCATCCACTCGGCGGTCGACATGCATC ATCCTCGAAAGCTAATGTTCCAGACGTTCTTGTCCCTGATGAGTCTGAAA GACTCGCACAACAAACTAGCAGTGAGGAACATGATGCCATTCCCATTCCA GCTTTACATTCATCAATTCAAGATGTTCAAGATACTGCTGTGAACGACGA CGCACCGGATAAGGATGGTGAACCCCTGCAAACGAGGCTCAGTAGTATGG AAACGATAATCCGTGAAGAGGTTGACGTTGATTACACATCATCAAGTACG GGGAGGGATTCACCAGTGGAGCGTGACTCAAGAAAACTTAGTCGATCGAG TAGCAGAACTCATCGACGAGCGCGATGCCGTCCGTATTCTGTGGATGAGG AGGGGTTAAATGATTACGTTTCATCAGAAAAGGTTGGTATGCGTTCTACT GGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAATTATTCAGAATC TACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGCCTCGAGAAGAGG ATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGTAAGGGAGGAGGT AACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGCCGACGAAGACCC ACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGGGTGACCGAAGAC GTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGGCAGTATGCACAG GGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATGGAAAAGTATGTT CCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACAAGCAACCTGACC GAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTTTTCGGGAAGGCC ACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGATCCACTAGTTTC AGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGGAAGGCCTGGGAC CTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAGCGGTTAAGGGCC TGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCGTCGATGA back to topprotein sequence of Gcaud1982.t1 >Gcaud1982.t1 ID=Gcaud1982.t1|Name=Gcaud1982.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=815bp
MELTYSQPYANFRAWVPRNRLPIGHSNPNQWIYYDWGPRSYPEPIICLHS LIGSAESYFYQLIELAPLGYRVLTVHIPVYWSVPEFCDALHIFLETLSIR RAHFYGAGLGGFLALHYAARRPERVVSLILTHSFLSTANLNLPIPYSVSV LKWLPSFLVQSTMRAILPRGRTTVQLANAAEFAIGHTLRCNRETLASRLA LSLSTTSVIDRILVPGQRITLIDTLDRSPAALQLSDDTASQLPRARRALL KRGADFPYLSVPEDVNVHLVVHMRRNAPKPGGPVPVPPPAKPRPLPPSIL RRKNKREMERQAAASLEEIERRAHSAVQQVEALNLQRFKQQIAHLKDHLP ERDEAFLAAVMNHCEGDLDLAIINVRNNIYDDAFYDNYKKEAFKSACEAI REEENQKHPIETNRKEESNDASKDQAMEADGERMVSGGTGSHKDRSEDGD SVSSSTGGHPLGGRHASSSKANVPDVLVPDESERLAQQTSSEEHDAIPIP ALHSSIQDVQDTAVNDDAPDKDGEPLQTRLSSMETIIREEVDVDYTSSST GRDSPVERDSRKLSRSSSRTHRRARCRPYSVDEEGLNDYVSSEKVGMRST GTFVGRGPAPLRNYSESTITGDWMRAPLQPREEDEDGEEDEDEGRGKGGG NFEPASGASLLDADEDPLELPKHSSPRSPGDRRRGIYRSRSKSSVRQYAQ GNGSTRDPRSFSWKSMFPKETEVDPSAGDKQPDRGEDMQNPSKGAVFGKA TGDEWDSYRSGEDPLVSAGEMDPLEENGGEGLGPEVSLEKGSEEQERLRA WRMSAEEASSSVRR* back to topmRNA from alignment at NODE_5_length_105932_cov_4.447794:11819..14263- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud1982.t1 ID=Gcaud1982.t1|Name=Gcaud1982.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2445bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..14263- (Gracilaria caudata M_176_S67 male) ATGGAGCTGACCTACTCGCAGCCGTACGCCAACTTCCGTGCATGGGTTCC
GCGTAATCGTCTGCCTATCGGCCATTCTAACCCCAACCAGTGGATTTATT
ACGACTGGGGTCCACGCTCCTATCCCGAGCCCATCATATGTCTGCACTCG
CTCATCGGCTCTGCGGAATCCTACTTCTACCAGCTTATAGAACTAGCACC
TCTGGGTTATCGCGTTCTCACCGTGCACATCCCGGTATACTGGTCCGTGC
CGGAATTTTGCGATGCGCTGCACATCTTCTTGGAGACTCTCTCTATCCGC
AGAGCTCATTTTTATGGCGCGGGGCTAGGCGGTTTCTTGGCGCTGCACTA
TGCCGCTCGACGTCCGGAACGCGTTGTGTCGCTTATTCTTACGCACTCTT
TTCTTTCTACGGCCAATCTTAACTTACCTATTCCGTACTCGGTTTCTGTT
CTAAAGTGGTTACCTAGCTTTTTGGTGCAAAGTACCATGCGAGCCATCCT
GCCAAGGGGGCGAACTACCGTGCAACTAGCGAATGCTGCCGAGTTCGCAA
TAGGACATACCCTTCGGTGCAACCGTGAAACCCTTGCGTCTCGCCTCGCA
CTCTCTTTATCCACCACTTCCGTGATCGATAGGATACTTGTTCCAGGGCA
GCGAATTACCTTAATTGACACTCTAGACCGCTCCCCTGCAGCCCTTCAGT
TATCAGATGATACCGCTTCCCAGTTACCTCGGGCAAGGAGAGCGCTTCTG
AAACGCGGTGCAGATTTCCCATACCTTTCAGTTCCTGAGGACGTCAATGT
TCACCTTGTGGTTCACATGCGCCGCAATGCACCCAAACCTGGCGGGCCTG
TACCAGTCCCACCTCCGGCAAAGCCAAGGCCCCTTCCGCCTTCTATATTG
CGCAGAAAGAACAAGAGGGAGATGGAAAGACAGGCTGCAGCGTCATTGGA
AGAAATCGAAAGAAGAGCTCACTCTGCTGTCCAACAAGTAGAAGCGCTAA
ATCTTCAACGCTTCAAACAACAGATTGCCCATTTGAAAGACCACTTACCT
GAAAGAGACGAGGCATTTCTTGCAGCTGTTATGAACCACTGCGAAGGAGA
TCTCGATCTTGCCATTATAAACGTTCGGAATAACATATATGATGATGCCT
TTTATGACAACTACAAAAAGGAAGCATTCAAGAGCGCCTGTGAAGCCATT
CGGGAAGAAGAGAATCAGAAACACCCAATTGAAACGAACCGAAAAGAAGA
ATCGAATGATGCGTCCAAGGATCAAGCAATGGAAGCAGACGGGGAGCGCA
TGGTATCTGGTGGTACCGGTAGTCATAAGGACCGCAGTGAAGATGGTGAC
TCTGTTTCTTCAAGTACAGGGGGGCATCCACTCGGCGGTCGACATGCATC
ATCCTCGAAAGCTAATGTTCCAGACGTTCTTGTCCCTGATGAGTCTGAAA
GACTCGCACAACAAACTAGCAGTGAGGAACATGATGCCATTCCCATTCCA
GCTTTACATTCATCAATTCAAGATGTTCAAGATACTGCTGTGAACGACGA
CGCACCGGATAAGGATGGTGAACCCCTGCAAACGAGGCTCAGTAGTATGG
AAACGATAATCCGTGAAGAGGTTGACGTTGATTACACATCATCAAGTACG
GGGAGGGATTCACCAGTGGAGCGTGACTCAAGAAAACTTAGTCGATCGAG
TAGCAGAACTCATCGACGAGCGCGATGCCGTCCGTATTCTGTGGATGAGG
AGGGGTTAAATGATTACGTTTCATCAGAAAAGGTTGGTATGCGTTCTACT
GGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAATTATTCAGAATC
TACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGCCTCGAGAAGAGG
ATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGTAAGGGAGGAGGT
AACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGCCGACGAAGACCC
ACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGGGTGACCGAAGAC
GTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGGCAGTATGCACAG
GGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATGGAAAAGTATGTT
CCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACAAGCAACCTGACC
GAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTTTTCGGGAAGGCC
ACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGATCCACTAGTTTC
AGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGGAAGGCCTGGGAC
CTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAGCGGTTAAGGGCC
TGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCGTCGATGA back to topCoding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:11819..14263- >Gcaud1982.t1 ID=Gcaud1982.t1|Name=Gcaud1982.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2445bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:11819..14263- (Gracilaria caudata M_176_S67 male) ATGGAGCTGACCTACTCGCAGCCGTACGCCAACTTCCGTGCATGGGTTCC GCGTAATCGTCTGCCTATCGGCCATTCTAACCCCAACCAGTGGATTTATT ACGACTGGGGTCCACGCTCCTATCCCGAGCCCATCATATGTCTGCACTCG CTCATCGGCTCTGCGGAATCCTACTTCTACCAGCTTATAGAACTAGCACC TCTGGGTTATCGCGTTCTCACCGTGCACATCCCGGTATACTGGTCCGTGC CGGAATTTTGCGATGCGCTGCACATCTTCTTGGAGACTCTCTCTATCCGC AGAGCTCATTTTTATGGCGCGGGGCTAGGCGGTTTCTTGGCGCTGCACTA TGCCGCTCGACGTCCGGAACGCGTTGTGTCGCTTATTCTTACGCACTCTT TTCTTTCTACGGCCAATCTTAACTTACCTATTCCGTACTCGGTTTCTGTT CTAAAGTGGTTACCTAGCTTTTTGGTGCAAAGTACCATGCGAGCCATCCT GCCAAGGGGGCGAACTACCGTGCAACTAGCGAATGCTGCCGAGTTCGCAA TAGGACATACCCTTCGGTGCAACCGTGAAACCCTTGCGTCTCGCCTCGCA CTCTCTTTATCCACCACTTCCGTGATCGATAGGATACTTGTTCCAGGGCA GCGAATTACCTTAATTGACACTCTAGACCGCTCCCCTGCAGCCCTTCAGT TATCAGATGATACCGCTTCCCAGTTACCTCGGGCAAGGAGAGCGCTTCTG AAACGCGGTGCAGATTTCCCATACCTTTCAGTTCCTGAGGACGTCAATGT TCACCTTGTGGTTCACATGCGCCGCAATGCACCCAAACCTGGCGGGCCTG TACCAGTCCCACCTCCGGCAAAGCCAAGGCCCCTTCCGCCTTCTATATTG CGCAGAAAGAACAAGAGGGAGATGGAAAGACAGGCTGCAGCGTCATTGGA AGAAATCGAAAGAAGAGCTCACTCTGCTGTCCAACAAGTAGAAGCGCTAA ATCTTCAACGCTTCAAACAACAGATTGCCCATTTGAAAGACCACTTACCT GAAAGAGACGAGGCATTTCTTGCAGCTGTTATGAACCACTGCGAAGGAGA TCTCGATCTTGCCATTATAAACGTTCGGAATAACATATATGATGATGCCT TTTATGACAACTACAAAAAGGAAGCATTCAAGAGCGCCTGTGAAGCCATT CGGGAAGAAGAGAATCAGAAACACCCAATTGAAACGAACCGAAAAGAAGA ATCGAATGATGCGTCCAAGGATCAAGCAATGGAAGCAGACGGGGAGCGCA TGGTATCTGGTGGTACCGGTAGTCATAAGGACCGCAGTGAAGATGGTGAC TCTGTTTCTTCAAGTACAGGGGGGCATCCACTCGGCGGTCGACATGCATC ATCCTCGAAAGCTAATGTTCCAGACGTTCTTGTCCCTGATGAGTCTGAAA GACTCGCACAACAAACTAGCAGTGAGGAACATGATGCCATTCCCATTCCA GCTTTACATTCATCAATTCAAGATGTTCAAGATACTGCTGTGAACGACGA CGCACCGGATAAGGATGGTGAACCCCTGCAAACGAGGCTCAGTAGTATGG AAACGATAATCCGTGAAGAGGTTGACGTTGATTACACATCATCAAGTACG GGGAGGGATTCACCAGTGGAGCGTGACTCAAGAAAACTTAGTCGATCGAG TAGCAGAACTCATCGACGAGCGCGATGCCGTCCGTATTCTGTGGATGAGG AGGGGTTAAATGATTACGTTTCATCAGAAAAGGTTGGTATGCGTTCTACT GGAACTTTTGTAGGGCGCGGGCCTGCTCCTTTGAGAAATTATTCAGAATC TACTATTACAGGTGATTGGATGCGTGCTCCACTGCAGCCTCGAGAAGAGG ATGAGGATGGGGAAGAGGATGAGGATGAGGGGAGAGGTAAGGGAGGAGGT AACTTTGAACCTGCCAGCGGAGCAAGCTTGCTAGACGCCGACGAAGACCC ACTGGAACTACCAAAGCACAGCTCTCCGCGGTCCCCGGGTGACCGAAGAC GTGGTATCTACAGAAGCAGGAGTAAATCCTCAGTAAGGCAGTATGCACAG GGAAACGGCTCGACTCGAGACCCAAGGTCATTCTCATGGAAAAGTATGTT CCCGAAAGAGACTGAAGTCGATCCATCAGCAGGAGACAAGCAACCTGACC GAGGTGAGGATATGCAGAACCCGTCAAAGGGGGCTGTTTTCGGGAAGGCC ACCGGCGACGAATGGGACTCGTACAGAAGTGGGGAGGATCCACTAGTTTC AGCAGGGGAAATGGACCCTCTTGAAGAGAACGGAGGGGAAGGCCTGGGAC CTGAAGTGAGTTTGGAGAAAGGTAGCGAGGAACAAGAGCGGTTAAGGGCC TGGAGAATGTCTGCGGAAGAAGCGTCAAGCAGTGTTCGTCGATGA back to top
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