Gcaud1990.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1990.t1
Unique Name	Gcaud1990.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	319

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:32607..33563 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1990	Gcaud1990	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 32607..33563 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1990.t1.stop1	Gcaud1990.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 32607..32609 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1990.t1.CDS1	Gcaud1990.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 32607..33563 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1990.t1.exon1	Gcaud1990.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 32607..33563 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1990.t1.start1	Gcaud1990.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 33561..33563 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1990.t1	Gcaud1990.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 32607..33563 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:32607..33563-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:32607..33563-

mRNA sequence

>Gcaud1990.t1 ID=Gcaud1990.t1|Name=Gcaud1990.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=319bp
MKWTPDEDIACAHAILSLEEVRNRRAVVKQGDHVEYDHNGRNSRRVDSES
SPIGVGKKAPAGNFGISQRMGAFKNQVSVVAVQVLKYTENSVRYRGNIGS
CFKPRVTSEVQSSELSDVEVSAIPPVMSKSPRPEYRNRTLVVPKLVGNDI
SEITAEAESQDSLRTVSIYDEESSPIPNGKERVKSQLPSEEPVPYVESGF
VKRAIRSYTLNVVKAGRDSDSIDEERDSVVNASGETTGSTISKPMQYSFS
ELADHSMVSSGSDSPTSGIGMKDIDPEGHYQAKEKRSSDFKNGYVARIAE
SFDYYIGHEQSGRRPGLQ*

spliced messenger RNA

>Gcaud1990.t1 ID=Gcaud1990.t1|Name=Gcaud1990.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:32607..33563- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTGGACACCCGATGAAGATATTGCCTGTGCCCATGCTATTCTGAG
CCTGGAGGAGGTTCGAAATCGAAGAGCCGTCGTCAAACAAGGGGATCATG
TTGAATATGATCACAATGGCAGAAATTCCAGACGGGTTGACTCAGAATCT
TCACCGATCGGTGTCGGCAAAAAGGCACCTGCAGGGAACTTCGGCATTAG
TCAGCGCATGGGAGCGTTCAAAAACCAGGTCAGCGTTGTCGCTGTCCAAG
TGCTGAAGTACACTGAGAACTCTGTGAGATATAGAGGAAACATTGGGTCT
TGCTTCAAGCCAAGAGTAACGAGTGAAGTCCAGTCTTCAGAACTTTCTGA
TGTGGAGGTGAGTGCGATACCTCCCGTGATGTCCAAGTCGCCACGGCCAG
AGTATAGAAACAGGACACTCGTGGTCCCGAAGCTGGTCGGAAATGACATA
AGTGAGATAACGGCGGAGGCAGAATCACAAGATTCGTTAAGGACCGTCTC
CATTTATGATGAGGAATCTTCACCAATTCCAAATGGAAAGGAACGAGTGA
AAAGTCAACTCCCTAGTGAAGAGCCTGTCCCTTACGTTGAGTCAGGTTTT
GTCAAACGCGCAATTCGATCCTATACGCTAAATGTTGTAAAAGCAGGGAG
GGACAGTGATTCTATTGACGAAGAAAGAGACTCCGTAGTGAATGCCTCGG
GCGAAACTACCGGTTCGACAATAAGCAAGCCCATGCAATACAGTTTTTCT
GAATTGGCTGATCATTCAATGGTATCGAGTGGAAGTGACTCACCAACATC
AGGGATTGGAATGAAAGACATTGATCCTGAAGGACACTATCAGGCCAAAG
AGAAGAGATCAAGTGATTTCAAGAATGGCTATGTGGCACGAATAGCGGAG
TCCTTTGACTACTACATTGGACACGAGCAGAGTGGAAGGCGCCCCGGCTT
GCAGTAA

protein sequence of Gcaud1990.t1

>Gcaud1990.t1 ID=Gcaud1990.t1|Name=Gcaud1990.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=319bp
MKWTPDEDIACAHAILSLEEVRNRRAVVKQGDHVEYDHNGRNSRRVDSES
SPIGVGKKAPAGNFGISQRMGAFKNQVSVVAVQVLKYTENSVRYRGNIGS
CFKPRVTSEVQSSELSDVEVSAIPPVMSKSPRPEYRNRTLVVPKLVGNDI
SEITAEAESQDSLRTVSIYDEESSPIPNGKERVKSQLPSEEPVPYVESGF
VKRAIRSYTLNVVKAGRDSDSIDEERDSVVNASGETTGSTISKPMQYSFS
ELADHSMVSSGSDSPTSGIGMKDIDPEGHYQAKEKRSSDFKNGYVARIAE
SFDYYIGHEQSGRRPGLQ*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:32607..33563-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1990.t1 ID=Gcaud1990.t1|Name=Gcaud1990.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:32607..33563- (Gracilaria caudata M_176_S67 male)
ATGAAGTGGACACCCGATGAAGATATTGCCTGTGCCCATGCTATTCTGAG
CCTGGAGGAGGTTCGAAATCGAAGAGCCGTCGTCAAACAAGGGGATCATG
TTGAATATGATCACAATGGCAGAAATTCCAGACGGGTTGACTCAGAATCT
TCACCGATCGGTGTCGGCAAAAAGGCACCTGCAGGGAACTTCGGCATTAG
TCAGCGCATGGGAGCGTTCAAAAACCAGGTCAGCGTTGTCGCTGTCCAAG
TGCTGAAGTACACTGAGAACTCTGTGAGATATAGAGGAAACATTGGGTCT
TGCTTCAAGCCAAGAGTAACGAGTGAAGTCCAGTCTTCAGAACTTTCTGA
TGTGGAGGTGAGTGCGATACCTCCCGTGATGTCCAAGTCGCCACGGCCAG
AGTATAGAAACAGGACACTCGTGGTCCCGAAGCTGGTCGGAAATGACATA
AGTGAGATAACGGCGGAGGCAGAATCACAAGATTCGTTAAGGACCGTCTC
CATTTATGATGAGGAATCTTCACCAATTCCAAATGGAAAGGAACGAGTGA
AAAGTCAACTCCCTAGTGAAGAGCCTGTCCCTTACGTTGAGTCAGGTTTT
GTCAAACGCGCAATTCGATCCTATACGCTAAATGTTGTAAAAGCAGGGAG
GGACAGTGATTCTATTGACGAAGAAAGAGACTCCGTAGTGAATGCCTCGG
GCGAAACTACCGGTTCGACAATAAGCAAGCCCATGCAATACAGTTTTTCT
GAATTGGCTGATCATTCAATGGTATCGAGTGGAAGTGACTCACCAACATC
AGGGATTGGAATGAAAGACATTGATCCTGAAGGACACTATCAGGCCAAAG
AGAAGAGATCAAGTGATTTCAAGAATGGCTATGTGGCACGAATAGCGGAG
TCCTTTGACTACTACATTGGACACGAGCAGAGTGGAAGGCGCCCCGGCTT
GCAGTAA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:32607..33563-

>Gcaud1990.t1 ID=Gcaud1990.t1|Name=Gcaud1990.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=957bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:32607..33563- (Gracilaria caudata M_176_S67 male)
ATGAAGTGGACACCCGATGAAGATATTGCCTGTGCCCATGCTATTCTGAG
CCTGGAGGAGGTTCGAAATCGAAGAGCCGTCGTCAAACAAGGGGATCATG
TTGAATATGATCACAATGGCAGAAATTCCAGACGGGTTGACTCAGAATCT
TCACCGATCGGTGTCGGCAAAAAGGCACCTGCAGGGAACTTCGGCATTAG
TCAGCGCATGGGAGCGTTCAAAAACCAGGTCAGCGTTGTCGCTGTCCAAG
TGCTGAAGTACACTGAGAACTCTGTGAGATATAGAGGAAACATTGGGTCT
TGCTTCAAGCCAAGAGTAACGAGTGAAGTCCAGTCTTCAGAACTTTCTGA
TGTGGAGGTGAGTGCGATACCTCCCGTGATGTCCAAGTCGCCACGGCCAG
AGTATAGAAACAGGACACTCGTGGTCCCGAAGCTGGTCGGAAATGACATA
AGTGAGATAACGGCGGAGGCAGAATCACAAGATTCGTTAAGGACCGTCTC
CATTTATGATGAGGAATCTTCACCAATTCCAAATGGAAAGGAACGAGTGA
AAAGTCAACTCCCTAGTGAAGAGCCTGTCCCTTACGTTGAGTCAGGTTTT
GTCAAACGCGCAATTCGATCCTATACGCTAAATGTTGTAAAAGCAGGGAG
GGACAGTGATTCTATTGACGAAGAAAGAGACTCCGTAGTGAATGCCTCGG
GCGAAACTACCGGTTCGACAATAAGCAAGCCCATGCAATACAGTTTTTCT
GAATTGGCTGATCATTCAATGGTATCGAGTGGAAGTGACTCACCAACATC
AGGGATTGGAATGAAAGACATTGATCCTGAAGGACACTATCAGGCCAAAG
AGAAGAGATCAAGTGATTTCAAGAATGGCTATGTGGCACGAATAGCGGAG
TCCTTTGACTACTACATTGGACACGAGCAGAGTGGAAGGCGCCCCGGCTT
GCAGTAA