Gcaud1980.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1980.t1
Unique NameGcaud1980.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length85
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:8563..8912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1980Gcaud1980Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 8563..8912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1Gcaud1980.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 8563..8912 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1.start1Gcaud1980.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 8563..8565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1.CDS1Gcaud1980.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 8563..8727 +
Gcaud1980.t1.CDS2Gcaud1980.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 8823..8912 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1.exon1Gcaud1980.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 8563..8727 +
Gcaud1980.t1.exon2Gcaud1980.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 8823..8912 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1.intron1Gcaud1980.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5_length_105932_cov_4.447794 8728..8822 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1980.t1.stop1Gcaud1980.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 8910..8912 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1980.t1 ID=Gcaud1980.t1|Name=Gcaud1980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=85bp
MTDPSFSRKKLSCTTPLTPLRDLKTPIISHDVSLSESDVLFASVFEKCMR
TGPKKSARFSNTEARAKPQKLSAIALAPHFGLND*
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spliced messenger RNA

>Gcaud1980.t1 ID=Gcaud1980.t1|Name=Gcaud1980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:8563..8912+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGATCCTTCTTTCAGTAGAAAGAAATTGAGCTGCACTACTCCATT
GACTCCATTACGAGATTTGAAAACGCCCATCATCTCCCATGACGTATCCC
TTTCGGAATCAGATGTGCTCTTCGCTTCAGTATTTGAAAAGTGTATGAGG
ACTGGACCCAAAAAGAGTGCGCGGTTTTCCAATACAGAAGCGAGAGCTAA
ACCACAGAAATTGAGCGCCATTGCCCTCGCACCTCATTTCGGCTTGAACG
ATTGA
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protein sequence of Gcaud1980.t1

>Gcaud1980.t1 ID=Gcaud1980.t1|Name=Gcaud1980.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=85bp
MTDPSFSRKKLSCTTPLTPLRDLKTPIISHDVSLSESDVLFASVFEKCMR
TGPKKSARFSNTEARAKPQKLSAIALAPHFGLND*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:8563..8912+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1980.t1 ID=Gcaud1980.t1|Name=Gcaud1980.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:8563..8912+ (Gracilaria caudata M_176_S67 male)
ATGACAGATCCTTCTTTCAGTAGAAAGAAATTGAGCTGCACTACTCCATT
GACTCCATTACGAGATTTGAAAACGCCCATCATCTCCCATGACGTATCCC
TTTCGGAATCAGATGTGCTCTTCGCTTCAGTATTTGAAAAGTGTATGAGG
ACTGGACCCAAAAAGGTATCCAATTCAACATGACTTTTTGCAATCTGTCT
CGTTTTCCGGCCTGCAACTGGTATAGATGAACTTATGTTGTCCGATTTTT
TCTTTTACAGAGTGCGCGGTTTTCCAATACAGAAGCGAGAGCTAAACCAC
AGAAATTGAGCGCCATTGCCCTCGCACCTCATTTCGGCTTGAACGATTGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:8563..8912+

>Gcaud1980.t1 ID=Gcaud1980.t1|Name=Gcaud1980.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=255bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:8563..8912+ (Gracilaria caudata M_176_S67 male)
ATGACAGATCCTTCTTTCAGTAGAAAGAAATTGAGCTGCACTACTCCATT
GACTCCATTACGAGATTTGAAAACGCCCATCATCTCCCATGACGTATCCC
TTTCGGAATCAGATGTGCTCTTCGCTTCAGTATTTGAAAAGTGTATGAGG
ACTGGACCCAAAAAGAGTGCGCGGTTTTCCAATACAGAAGCGAGAGCTAA
ACCACAGAAATTGAGCGCCATTGCCCTCGCACCTCATTTCGGCTTGAACG
ATTGA
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