Gcaud1999.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1999.t1
Unique NameGcaud1999.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:63519..65313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1469607.KK073769_gene5063
PFAMsFAD_binding_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00046,RC03365
KEGG koko:K00486,ko:K20090
KEGG ReactionR01960,R11132,R11135,R11373,R11374
KEGG Pathwayko00380,ko00404,ko01100,ko01130,ko02024,map00380,map00404,map01100,map01130,map02024
KEGG ModuleM00038,M00808
Evalue3.22e-34
EggNOG OGsCOG0654@1|root,COG0654@2|Bacteria,1G25R@1117|Cyanobacteria,1HIYQ@1161|Nostocales
EC1.14.13.224,1.14.13.9
DescriptionKynurenine 3-monooxygenase
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1999Gcaud1999Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 63519..65313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1Gcaud1999.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 63519..65313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1.start1Gcaud1999.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 63519..63521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1.CDS1Gcaud1999.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 63519..63537 +
Gcaud1999.t1.CDS2Gcaud1999.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 63650..65313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1.exon1Gcaud1999.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 63519..63537 +
Gcaud1999.t1.exon2Gcaud1999.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 63650..65313 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1.intron1Gcaud1999.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_5_length_105932_cov_4.447794 63538..63649 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1999.t1.stop1Gcaud1999.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 65311..65313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1999.t1 ID=Gcaud1999.t1|Name=Gcaud1999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=561bp
LTLKNDGYTAFTGVAKVVSPSKLVPRERFVSTRQRHFYQRTSKRCVIPSA
RSMTMVTQARQHSSTIPEAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTV
IEQDDDFSRFDPSRTYTLRLNERGCKVLRQVPKLLRRVAKDGVVATNRFL
ILHKPDGTCKTLKFISPPTDGVRYILTPRISLVESLQSYAAELEHIKLLK
KTQVTNVIYHSQRDMEVRVNCEGKEFGIHSKLILACDGRKSILGETLRSA
DSVNDGLFRSTNGLGTDSVPTLTSGRLCKSIVLQENYNSREPEFEEDLTD
FSVLRQFLPTNGRSDKHSIWFGVFNTSKAMRDRCEGIIGIVSYLPETELH
SAKTVEDGYNLFEEILPQLNSRSCISPESMKKFIEARPLRFPKSSRVESL
VVHVGSTPSAGVVFLGDAAHSFPPDAGQGVNSAFEDVLVFTQVLDGMDKN
ASIEDILREYEAERDADVRALTTIVRRTATPVGGFSPKLLFRIWNHKARG
LLAKLFPNVFYPSLFDAMEKNYAYRDALRLHDLTTTRLLAMAALIPCATI
LGGLGLLAIK*
back to top

spliced messenger RNA

>Gcaud1999.t1 ID=Gcaud1999.t1|Name=Gcaud1999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1683bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:63519..65313+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGACTCTGAAGAACGATGGATATACTGCCTTCACCGGTGTAGCGAAGGT
AGTATCACCTTCGAAATTAGTTCCTCGGGAGCGCTTTGTCTCCACTCGCC
AACGTCACTTCTACCAAAGGACGTCCAAGCGATGCGTCATTCCTTCGGCG
AGATCCATGACTATGGTGACACAAGCTCGTCAACATAGTAGCACAATCCC
AGAGGCCGTTCGAGATGCAAACACAGTCATCGTTGGAGGTGGGCCAACTG
GACTACTTACGGCAATTTTTATGGCACAACGTAACATTCCAGTCACGGTG
ATAGAACAAGACGACGATTTCAGCCGTTTTGACCCCTCCAGAACGTATAC
TCTTCGGTTGAATGAACGTGGGTGCAAAGTTCTCCGTCAAGTGCCAAAAC
TGTTGCGGAGAGTGGCCAAGGATGGTGTAGTCGCCACGAATCGGTTCCTA
ATCCTGCACAAACCGGATGGTACTTGCAAGACATTGAAATTTATCTCCCC
ACCAACAGATGGCGTTCGGTACATCTTGACTCCCAGAATTTCGTTAGTGG
AAAGCCTCCAGTCATATGCCGCAGAACTTGAGCATATCAAATTGCTTAAG
AAGACCCAAGTAACTAATGTGATATATCACTCACAGAGGGATATGGAAGT
CCGTGTGAACTGTGAAGGAAAGGAATTCGGCATTCATTCTAAGCTTATTC
TCGCTTGTGACGGGCGGAAAAGTATATTAGGTGAAACCTTGAGATCTGCC
GACTCGGTCAACGATGGACTTTTTCGAAGCACGAATGGACTAGGAACGGA
TTCCGTTCCCACACTGACAAGCGGACGGCTCTGCAAATCGATTGTACTGC
AAGAAAACTATAACTCTCGTGAACCTGAATTTGAAGAGGATCTCACTGAC
TTCTCAGTCCTCCGCCAATTCCTGCCCACAAACGGGCGTTCTGATAAACA
CAGTATCTGGTTCGGTGTATTTAATACGTCCAAAGCAATGCGAGATCGTT
GTGAGGGGATTATCGGAATCGTCTCTTATTTGCCTGAGACAGAATTGCAC
TCTGCGAAAACAGTCGAAGATGGTTACAATCTGTTCGAGGAAATACTTCC
ACAACTTAACAGTCGGTCATGTATCAGCCCTGAAAGTATGAAGAAGTTCA
TTGAAGCTAGACCATTGCGGTTCCCGAAGTCGTCGCGGGTCGAATCCCTG
GTGGTACATGTGGGCTCCACTCCATCAGCAGGTGTTGTTTTCCTTGGAGA
TGCGGCTCACTCCTTCCCCCCAGATGCTGGACAAGGTGTGAATTCGGCCT
TTGAGGATGTACTGGTGTTCACCCAGGTCCTAGACGGGATGGATAAAAAT
GCTAGCATTGAAGATATCTTACGAGAATATGAAGCGGAACGAGACGCAGA
TGTGAGAGCGTTGACGACTATTGTTCGTCGCACAGCCACGCCCGTTGGGG
GGTTTTCACCTAAACTTTTGTTTCGAATATGGAACCACAAAGCACGGGGA
CTTCTCGCAAAGCTGTTTCCAAACGTGTTTTATCCGAGTTTGTTtgatgc
aatggaaaagaactatgcgtatcgagatgctctacgattgcacgatctga
ccacgacgagattgttggccatggcgGCCCTGATTCCATGCGCAACCATT
CTTGGGGGTCTCGGTTTGCTTGCAATAAAATAG
back to top

protein sequence of Gcaud1999.t1

>Gcaud1999.t1 ID=Gcaud1999.t1|Name=Gcaud1999.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=561bp
LTLKNDGYTAFTGVAKVVSPSKLVPRERFVSTRQRHFYQRTSKRCVIPSA
RSMTMVTQARQHSSTIPEAVRDANTVIVGGGPTGLLTAIFMAQRNIPVTV
IEQDDDFSRFDPSRTYTLRLNERGCKVLRQVPKLLRRVAKDGVVATNRFL
ILHKPDGTCKTLKFISPPTDGVRYILTPRISLVESLQSYAAELEHIKLLK
KTQVTNVIYHSQRDMEVRVNCEGKEFGIHSKLILACDGRKSILGETLRSA
DSVNDGLFRSTNGLGTDSVPTLTSGRLCKSIVLQENYNSREPEFEEDLTD
FSVLRQFLPTNGRSDKHSIWFGVFNTSKAMRDRCEGIIGIVSYLPETELH
SAKTVEDGYNLFEEILPQLNSRSCISPESMKKFIEARPLRFPKSSRVESL
VVHVGSTPSAGVVFLGDAAHSFPPDAGQGVNSAFEDVLVFTQVLDGMDKN
ASIEDILREYEAERDADVRALTTIVRRTATPVGGFSPKLLFRIWNHKARG
LLAKLFPNVFYPSLFDAMEKNYAYRDALRLHDLTTTRLLAMAALIPCATI
LGGLGLLAIK*
back to top

mRNA from alignment at NODE_5_length_105932_cov_4.447794:63519..65313+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1999.t1 ID=Gcaud1999.t1|Name=Gcaud1999.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1795bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:63519..65313+ (Gracilaria caudata M_176_S67 male)
TTGACTCTGAAGAACGATGGTGAGTGATATTTGTGTGAAGTTCGAATCGA
TCTACATAACTGGTCATTTGGAAGCAAGGAATCAAACCTTAAGGCGCGGA
ACTTACCCTTTCTACAACCCCTTCGTCTCAGGATATACTGCCTTCACCGG
TGTAGCGAAGGTAGTATCACCTTCGAAATTAGTTCCTCGGGAGCGCTTTG
TCTCCACTCGCCAACGTCACTTCTACCAAAGGACGTCCAAGCGATGCGTC
ATTCCTTCGGCGAGATCCATGACTATGGTGACACAAGCTCGTCAACATAG
TAGCACAATCCCAGAGGCCGTTCGAGATGCAAACACAGTCATCGTTGGAG
GTGGGCCAACTGGACTACTTACGGCAATTTTTATGGCACAACGTAACATT
CCAGTCACGGTGATAGAACAAGACGACGATTTCAGCCGTTTTGACCCCTC
CAGAACGTATACTCTTCGGTTGAATGAACGTGGGTGCAAAGTTCTCCGTC
AAGTGCCAAAACTGTTGCGGAGAGTGGCCAAGGATGGTGTAGTCGCCACG
AATCGGTTCCTAATCCTGCACAAACCGGATGGTACTTGCAAGACATTGAA
ATTTATCTCCCCACCAACAGATGGCGTTCGGTACATCTTGACTCCCAGAA
TTTCGTTAGTGGAAAGCCTCCAGTCATATGCCGCAGAACTTGAGCATATC
AAATTGCTTAAGAAGACCCAAGTAACTAATGTGATATATCACTCACAGAG
GGATATGGAAGTCCGTGTGAACTGTGAAGGAAAGGAATTCGGCATTCATT
CTAAGCTTATTCTCGCTTGTGACGGGCGGAAAAGTATATTAGGTGAAACC
TTGAGATCTGCCGACTCGGTCAACGATGGACTTTTTCGAAGCACGAATGG
ACTAGGAACGGATTCCGTTCCCACACTGACAAGCGGACGGCTCTGCAAAT
CGATTGTACTGCAAGAAAACTATAACTCTCGTGAACCTGAATTTGAAGAG
GATCTCACTGACTTCTCAGTCCTCCGCCAATTCCTGCCCACAAACGGGCG
TTCTGATAAACACAGTATCTGGTTCGGTGTATTTAATACGTCCAAAGCAA
TGCGAGATCGTTGTGAGGGGATTATCGGAATCGTCTCTTATTTGCCTGAG
ACAGAATTGCACTCTGCGAAAACAGTCGAAGATGGTTACAATCTGTTCGA
GGAAATACTTCCACAACTTAACAGTCGGTCATGTATCAGCCCTGAAAGTA
TGAAGAAGTTCATTGAAGCTAGACCATTGCGGTTCCCGAAGTCGTCGCGG
GTCGAATCCCTGGTGGTACATGTGGGCTCCACTCCATCAGCAGGTGTTGT
TTTCCTTGGAGATGCGGCTCACTCCTTCCCCCCAGATGCTGGACAAGGTG
TGAATTCGGCCTTTGAGGATGTACTGGTGTTCACCCAGGTCCTAGACGGG
ATGGATAAAAATGCTAGCATTGAAGATATCTTACGAGAATATGAAGCGGA
ACGAGACGCAGATGTGAGAGCGTTGACGACTATTGTTCGTCGCACAGCCA
CGCCCGTTGGGGGGTTTTCACCTAAACTTTTGTTTCGAATATGGAACCAC
AAAGCACGGGGACTTCTCGCAAAGCTGTTTCCAAACGTGTTTTATCCGAG
TTTGTTtgatgcaatggaaaagaactatgcgtatcgagatgctctacgat
tgcacgatctgaccacgacgagattgttggccatggcgGCCCTGATTCCA
TGCGCAACCATTCTTGGGGGTCTCGGTTTGCTTGCAATAAAATAG
back to top

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:63519..65313+

>Gcaud1999.t1 ID=Gcaud1999.t1|Name=Gcaud1999.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1683bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:63519..65313+ (Gracilaria caudata M_176_S67 male)
TTGACTCTGAAGAACGATGGATATACTGCCTTCACCGGTGTAGCGAAGGT
AGTATCACCTTCGAAATTAGTTCCTCGGGAGCGCTTTGTCTCCACTCGCC
AACGTCACTTCTACCAAAGGACGTCCAAGCGATGCGTCATTCCTTCGGCG
AGATCCATGACTATGGTGACACAAGCTCGTCAACATAGTAGCACAATCCC
AGAGGCCGTTCGAGATGCAAACACAGTCATCGTTGGAGGTGGGCCAACTG
GACTACTTACGGCAATTTTTATGGCACAACGTAACATTCCAGTCACGGTG
ATAGAACAAGACGACGATTTCAGCCGTTTTGACCCCTCCAGAACGTATAC
TCTTCGGTTGAATGAACGTGGGTGCAAAGTTCTCCGTCAAGTGCCAAAAC
TGTTGCGGAGAGTGGCCAAGGATGGTGTAGTCGCCACGAATCGGTTCCTA
ATCCTGCACAAACCGGATGGTACTTGCAAGACATTGAAATTTATCTCCCC
ACCAACAGATGGCGTTCGGTACATCTTGACTCCCAGAATTTCGTTAGTGG
AAAGCCTCCAGTCATATGCCGCAGAACTTGAGCATATCAAATTGCTTAAG
AAGACCCAAGTAACTAATGTGATATATCACTCACAGAGGGATATGGAAGT
CCGTGTGAACTGTGAAGGAAAGGAATTCGGCATTCATTCTAAGCTTATTC
TCGCTTGTGACGGGCGGAAAAGTATATTAGGTGAAACCTTGAGATCTGCC
GACTCGGTCAACGATGGACTTTTTCGAAGCACGAATGGACTAGGAACGGA
TTCCGTTCCCACACTGACAAGCGGACGGCTCTGCAAATCGATTGTACTGC
AAGAAAACTATAACTCTCGTGAACCTGAATTTGAAGAGGATCTCACTGAC
TTCTCAGTCCTCCGCCAATTCCTGCCCACAAACGGGCGTTCTGATAAACA
CAGTATCTGGTTCGGTGTATTTAATACGTCCAAAGCAATGCGAGATCGTT
GTGAGGGGATTATCGGAATCGTCTCTTATTTGCCTGAGACAGAATTGCAC
TCTGCGAAAACAGTCGAAGATGGTTACAATCTGTTCGAGGAAATACTTCC
ACAACTTAACAGTCGGTCATGTATCAGCCCTGAAAGTATGAAGAAGTTCA
TTGAAGCTAGACCATTGCGGTTCCCGAAGTCGTCGCGGGTCGAATCCCTG
GTGGTACATGTGGGCTCCACTCCATCAGCAGGTGTTGTTTTCCTTGGAGA
TGCGGCTCACTCCTTCCCCCCAGATGCTGGACAAGGTGTGAATTCGGCCT
TTGAGGATGTACTGGTGTTCACCCAGGTCCTAGACGGGATGGATAAAAAT
GCTAGCATTGAAGATATCTTACGAGAATATGAAGCGGAACGAGACGCAGA
TGTGAGAGCGTTGACGACTATTGTTCGTCGCACAGCCACGCCCGTTGGGG
GGTTTTCACCTAAACTTTTGTTTCGAATATGGAACCACAAAGCACGGGGA
CTTCTCGCAAAGCTGTTTCCAAACGTGTTTTATCCGAGTTTGTTtgatgc
aatggaaaagaactatgcgtatcgagatgctctacgattgcacgatctga
ccacgacgagattgttggccatggcgGCCCTGATTCCATGCGCAACCATT
CTTGGGGGTCTCGGTTTGCTTGCAATAAAATAG
back to top