Gcaud1979.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1979.t1
Unique Name	Gcaud1979.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:7033..8205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708670.1
Preferred name	PSMD13
PFAMs	PCI
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03039
KEGG Pathway	ko03050,ko05169,map03050,map05169
KEGG Module	M00341
GOs	GO:0000003,GO:0000280,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0006996,GO:0007049,GO:0007088,GO:0007127,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0016787,GO:0019538,GO:0019941,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051321,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061982,GO:0062033,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:0140013,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903046,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Evalue	3.63e-76
EggNOG OGs	KOG2908@1\|root,KOG2908@2759\|Eukaryota
Description	proteasome assembly
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1979	Gcaud1979	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 7033..8205 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1979.t1.start1	Gcaud1979.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 7033..7035 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1979.t1.CDS1	Gcaud1979.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 7033..8205 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1979.t1.exon1	Gcaud1979.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 7033..8205 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1979.t1.stop1	Gcaud1979.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 8203..8205 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1979.t1	Gcaud1979.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 7033..8205 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+

mRNA sequence

>Gcaud1979.t1 ID=Gcaud1979.t1|Name=Gcaud1979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=391bp
MSTSAAAEYIEQRVASAPDDSAKAALTTLQNLYNQKLWHQLTEYVKTIVA
DPKMSEKIGLYTSFLKHFEAKLNPVSLVQILVEIVRSELHQSPSDALAFL
SPLLAADGEKGSVVTASDEAHVLLLSHVAVLHMHASDNAACKKDVEAARV
LVEAAHDMNPLVHSAFYRAAAEYHKVVGTASDFFRNALQFLAYTPPNALG
VSSQHRWAFDIGIAALVGNDIYNFGEVLSHSIVHSLRGSENEWLLLLLEA
FNSGDLEKFDSVCQQSSAQMNAQPVLVANEEFLKQKVTILALMELCFSRS
LEHSIPFADVQKTCRLPLKEVEYLLMRSMSLGLILGEIDNVDQCVTISRV
QPRVLGRETIGEMAKRLSKWSQHVTDTVAFLNKTTVGIVE*

spliced messenger RNA

>Gcaud1979.t1 ID=Gcaud1979.t1|Name=Gcaud1979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCTCCGCCGCCGCCGAGTACATCGAGCAGCGCGTCGCATCAGC
GCCCGACGACTCTGCAAAAGCCGCGCTCACCACCTTGCAAAACCTGTATA
ATCAGAAGTTATGGCATCAGCTGACGGAGTATGTGAAGACTATCGTCGCC
GATCCCAAAATGAGCGAAAAGATTGGTCTCTACACTTCCTTTTTGAAGCA
CTTTGAAGCGAAACTGAATCCCGTATCACTCGTGCAGATCCTCGTTGAGA
TCGTCCGCTCAGAGTTACACCAAAGCCCGTCTGATGCTCTAGCGTTTCTT
TCCCCTCTGCTCGCCGCTGATGGTGAGAAAGGATCAGTCGTAACTGCAAG
CGATGAAGCGCATGTGCTTTTACTTTCTCACGTCGCCGTACTCCACATGC
ATGCCAGCGATAATGCAGCATGTAAGAAAGATGTTGAAGCCGCGCGTGTT
CTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCATTCTA
CCGCGCGGCTGCTGAATATCATAAGGTGGTGGGCACTGCCTCTGACTTCT
TTCGAAATGCCCTCCAGTTCCTTGCTTACACCCCTCCAAACGCCCTGGGC
GTGTCGTCGCAACATAGATGGGCCTTTGATATCGGCATAGCCGCTTTGGT
GGGCAATGACATTTATAACTTTGGTGAGGTTCTGTCACACTCCATTGTTC
ATTCCCTACGGGGCTCTGAGAACGAATGGCTCTTGCTTCTACTCGAAGCG
TTCAACAGCGGAGATCTGGAAAAGTTTGACTCTGTCTGTCAGCAATCCTC
GGCACAGATGAATGCCCAACCAGTGCTAGTAGCAAATGAAGAGTTTTTGA
AGCAGAAAGTCACGATCTTGGCACTCATGGAATTATGCTTCTCCAGATCC
CTGGAGCACTCAATTCCCTTCGCTGACGTACAGAAAACATGTCGTTTGCC
ACTGAAGGAAGTCGAATACCTTCTAATGCGGTCGATGAGTCTAGGTTTAA
TATTGGGAGAGATTGATAACGTTGACCAATGCGTTACAATATCTCGTGTT
CAACCAAGGGTTTTGGGAAGGGAGACTATCGGTGAAATGGCCAAGCGTTT
ATCGAAATGGAGCCAGCATGTCACTGACACCGTCGCGTTTTTGAACAAGA
CAACTGTAGGTATTGTGGAATAG

protein sequence of Gcaud1979.t1

>Gcaud1979.t1 ID=Gcaud1979.t1|Name=Gcaud1979.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=391bp
MSTSAAAEYIEQRVASAPDDSAKAALTTLQNLYNQKLWHQLTEYVKTIVA
DPKMSEKIGLYTSFLKHFEAKLNPVSLVQILVEIVRSELHQSPSDALAFL
SPLLAADGEKGSVVTASDEAHVLLLSHVAVLHMHASDNAACKKDVEAARV
LVEAAHDMNPLVHSAFYRAAAEYHKVVGTASDFFRNALQFLAYTPPNALG
VSSQHRWAFDIGIAALVGNDIYNFGEVLSHSIVHSLRGSENEWLLLLLEA
FNSGDLEKFDSVCQQSSAQMNAQPVLVANEEFLKQKVTILALMELCFSRS
LEHSIPFADVQKTCRLPLKEVEYLLMRSMSLGLILGEIDNVDQCVTISRV
QPRVLGRETIGEMAKRLSKWSQHVTDTVAFLNKTTVGIVE*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1979.t1 ID=Gcaud1979.t1|Name=Gcaud1979.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCTCCGCCGCCGCCGAGTACATCGAGCAGCGCGTCGCATCAGC
GCCCGACGACTCTGCAAAAGCCGCGCTCACCACCTTGCAAAACCTGTATA
ATCAGAAGTTATGGCATCAGCTGACGGAGTATGTGAAGACTATCGTCGCC
GATCCCAAAATGAGCGAAAAGATTGGTCTCTACACTTCCTTTTTGAAGCA
CTTTGAAGCGAAACTGAATCCCGTATCACTCGTGCAGATCCTCGTTGAGA
TCGTCCGCTCAGAGTTACACCAAAGCCCGTCTGATGCTCTAGCGTTTCTT
TCCCCTCTGCTCGCCGCTGATGGTGAGAAAGGATCAGTCGTAACTGCAAG
CGATGAAGCGCATGTGCTTTTACTTTCTCACGTCGCCGTACTCCACATGC
ATGCCAGCGATAATGCAGCATGTAAGAAAGATGTTGAAGCCGCGCGTGTT
CTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCATTCTA
CCGCGCGGCTGCTGAATATCATAAGGTGGTGGGCACTGCCTCTGACTTCT
TTCGAAATGCCCTCCAGTTCCTTGCTTACACCCCTCCAAACGCCCTGGGC
GTGTCGTCGCAACATAGATGGGCCTTTGATATCGGCATAGCCGCTTTGGT
GGGCAATGACATTTATAACTTTGGTGAGGTTCTGTCACACTCCATTGTTC
ATTCCCTACGGGGCTCTGAGAACGAATGGCTCTTGCTTCTACTCGAAGCG
TTCAACAGCGGAGATCTGGAAAAGTTTGACTCTGTCTGTCAGCAATCCTC
GGCACAGATGAATGCCCAACCAGTGCTAGTAGCAAATGAAGAGTTTTTGA
AGCAGAAAGTCACGATCTTGGCACTCATGGAATTATGCTTCTCCAGATCC
CTGGAGCACTCAATTCCCTTCGCTGACGTACAGAAAACATGTCGTTTGCC
ACTGAAGGAAGTCGAATACCTTCTAATGCGGTCGATGAGTCTAGGTTTAA
TATTGGGAGAGATTGATAACGTTGACCAATGCGTTACAATATCTCGTGTT
CAACCAAGGGTTTTGGGAAGGGAGACTATCGGTGAAATGGCCAAGCGTTT
ATCGAAATGGAGCCAGCATGTCACTGACACCGTCGCGTTTTTGAACAAGA
CAACTGTAGGTATTGTGGAATAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+

>Gcaud1979.t1 ID=Gcaud1979.t1|Name=Gcaud1979.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1173bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:7033..8205+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCTCCGCCGCCGCCGAGTACATCGAGCAGCGCGTCGCATCAGC
GCCCGACGACTCTGCAAAAGCCGCGCTCACCACCTTGCAAAACCTGTATA
ATCAGAAGTTATGGCATCAGCTGACGGAGTATGTGAAGACTATCGTCGCC
GATCCCAAAATGAGCGAAAAGATTGGTCTCTACACTTCCTTTTTGAAGCA
CTTTGAAGCGAAACTGAATCCCGTATCACTCGTGCAGATCCTCGTTGAGA
TCGTCCGCTCAGAGTTACACCAAAGCCCGTCTGATGCTCTAGCGTTTCTT
TCCCCTCTGCTCGCCGCTGATGGTGAGAAAGGATCAGTCGTAACTGCAAG
CGATGAAGCGCATGTGCTTTTACTTTCTCACGTCGCCGTACTCCACATGC
ATGCCAGCGATAATGCAGCATGTAAGAAAGATGTTGAAGCCGCGCGTGTT
CTGGTTGAAGCTGCGCATGACATGAATCCTCTTGTTCATTCTGCATTCTA
CCGCGCGGCTGCTGAATATCATAAGGTGGTGGGCACTGCCTCTGACTTCT
TTCGAAATGCCCTCCAGTTCCTTGCTTACACCCCTCCAAACGCCCTGGGC
GTGTCGTCGCAACATAGATGGGCCTTTGATATCGGCATAGCCGCTTTGGT
GGGCAATGACATTTATAACTTTGGTGAGGTTCTGTCACACTCCATTGTTC
ATTCCCTACGGGGCTCTGAGAACGAATGGCTCTTGCTTCTACTCGAAGCG
TTCAACAGCGGAGATCTGGAAAAGTTTGACTCTGTCTGTCAGCAATCCTC
GGCACAGATGAATGCCCAACCAGTGCTAGTAGCAAATGAAGAGTTTTTGA
AGCAGAAAGTCACGATCTTGGCACTCATGGAATTATGCTTCTCCAGATCC
CTGGAGCACTCAATTCCCTTCGCTGACGTACAGAAAACATGTCGTTTGCC
ACTGAAGGAAGTCGAATACCTTCTAATGCGGTCGATGAGTCTAGGTTTAA
TATTGGGAGAGATTGATAACGTTGACCAATGCGTTACAATATCTCGTGTT
CAACCAAGGGTTTTGGGAAGGGAGACTATCGGTGAAATGGCCAAGCGTTT
ATCGAAATGGAGCCAGCATGTCACTGACACCGTCGCGTTTTTGAACAAGA
CAACTGTAGGTATTGTGGAATAG