Gcaud1977.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1977.t1
Unique NameGcaud1977.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:4542..4979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_4751
PFAMsNblA
Max annot lvl1117|Cyanobacteria
Evalue1.82e-06
EggNOG OGs2E6N7@1|root,3318Q@2|Bacteria,1GAZ1@1117|Cyanobacteria,1HDWT@1150|Oscillatoriales
DescriptionPhycobilisome degradation protein NblA
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1977Gcaud1977Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 4542..4979 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1.stop1Gcaud1977.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 4542..4544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1.CDS1Gcaud1977.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 4542..4979 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1.exon1Gcaud1977.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 4542..4979 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1.start1Gcaud1977.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 4977..4979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1977.t1Gcaud1977.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 4542..4979 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MMRVNKRPPPGMAATSVTSLCSFVLPVSVFHGNQTKASFHSPLCKRPRST
PKHAAHLFPCAVYQPSEEDRGESLPETPNELTLAQQLLMKQYEEQVERMS
GDECRKLAVEVVRQMMVKDNIMKKMLNKDVNFGVEPPDPDDMQND*
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spliced messenger RNA

>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:4542..4979- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGGGTGAATAAACGCCCGCCACCAGGCATGGCCGCCACCTCCGT
CACATCGCTGTGTTCATTCGTTCTTCCTGTTTCTGTTTTCCATGGCAATC
AAACTAAAGCGTCATTCCATAGTCCTTTATGCAAGCGACCTCGTTCAACA
CCGAAGCACGCCGCCCACCTTTTCCCGTGCGCTGTCTATCAACCTTCCGA
AGAAGACAGGGGAGAGTCACTTCCAGAAACACCCAACGAACTAACGCTTG
CGCAACAACTGCTAATGAAACAATATGAAGAGCAAGTGGAGCGGATGAGT
GGCGATGAATGTCGTAAACTTGCCGTTGAAGTTGTGCGTCAGATGATGGT
TAAGGATAACATTATGAAGAAGATGCTAAACAAAGATGTTAATTTTGGCG
TCGAGCCGCCCGACCCAGACGATATGCAAAACGACTGA
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protein sequence of Gcaud1977.t1

>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MMRVNKRPPPGMAATSVTSLCSFVLPVSVFHGNQTKASFHSPLCKRPRST
PKHAAHLFPCAVYQPSEEDRGESLPETPNELTLAQQLLMKQYEEQVERMS
GDECRKLAVEVVRQMMVKDNIMKKMLNKDVNFGVEPPDPDDMQND*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:4542..4979-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:4542..4979- (Gracilaria caudata M_176_S67 male)
ATGATGCGGGTGAATAAACGCCCGCCACCAGGCATGGCCGCCACCTCCGT
CACATCGCTGTGTTCATTCGTTCTTCCTGTTTCTGTTTTCCATGGCAATC
AAACTAAAGCGTCATTCCATAGTCCTTTATGCAAGCGACCTCGTTCAACA
CCGAAGCACGCCGCCCACCTTTTCCCGTGCGCTGTCTATCAACCTTCCGA
AGAAGACAGGGGAGAGTCACTTCCAGAAACACCCAACGAACTAACGCTTG
CGCAACAACTGCTAATGAAACAATATGAAGAGCAAGTGGAGCGGATGAGT
GGCGATGAATGTCGTAAACTTGCCGTTGAAGTTGTGCGTCAGATGATGGT
TAAGGATAACATTATGAAGAAGATGCTAAACAAAGATGTTAATTTTGGCG
TCGAGCCGCCCGACCCAGACGATATGCAAAACGACTGA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:4542..4979-

>Gcaud1977.t1 ID=Gcaud1977.t1|Name=Gcaud1977.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:4542..4979- (Gracilaria caudata M_176_S67 male)
ATGATGCGGGTGAATAAACGCCCGCCACCAGGCATGGCCGCCACCTCCGT
CACATCGCTGTGTTCATTCGTTCTTCCTGTTTCTGTTTTCCATGGCAATC
AAACTAAAGCGTCATTCCATAGTCCTTTATGCAAGCGACCTCGTTCAACA
CCGAAGCACGCCGCCCACCTTTTCCCGTGCGCTGTCTATCAACCTTCCGA
AGAAGACAGGGGAGAGTCACTTCCAGAAACACCCAACGAACTAACGCTTG
CGCAACAACTGCTAATGAAACAATATGAAGAGCAAGTGGAGCGGATGAGT
GGCGATGAATGTCGTAAACTTGCCGTTGAAGTTGTGCGTCAGATGATGGT
TAAGGATAACATTATGAAGAAGATGCTAAACAAAGATGTTAATTTTGGCG
TCGAGCCGCCCGACCCAGACGATATGCAAAACGACTGA
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