Gcaud2000.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2000.t1
Unique NameGcaud2000.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length376
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5_length_105932_cov_4.447794contigNODE_5_length_105932_cov_4.447794:66376..67503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S112_134V6.1
PFAMsRrnaAD
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC03257
KEGG koko:K14191
KEGG ReactionR10716
GOsGO:0000154,GO:0000179,GO:0001510,GO:0001708,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0016433,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030154,GO:0031167,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140098,GO:0140102,GO:1901360,GO:2000232,GO:2000234
Evalue7.73e-105
EggNOG OGsCOG0030@1|root,KOG0820@2759|Eukaryota,37MCF@33090|Viridiplantae,3G9XB@35493|Streptophyta
EC2.1.1.183
DescriptionBelongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2000Gcaud2000Gracilaria caudata M_176_S67 malegeneNODE_5_length_105932_cov_4.447794 66376..67503 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2000.t1.stop1Gcaud2000.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5_length_105932_cov_4.447794 66376..66378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2000.t1.CDS1Gcaud2000.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5_length_105932_cov_4.447794 66376..67503 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2000.t1.exon1Gcaud2000.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5_length_105932_cov_4.447794 66376..67503 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2000.t1.start1Gcaud2000.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5_length_105932_cov_4.447794 67501..67503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2000.t1Gcaud2000.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5_length_105932_cov_4.447794 66376..67503 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2000.t1 ID=Gcaud2000.t1|Name=Gcaud2000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=376bp
MGRISKKPRRPPGAQATATLGHRGISFQKTHGQHILRNPRLADAIIAKCA
LKSTDVVLEVGPGTGNLSVRVLPLCKKLLAYELDSRMIVELYKRVQATAH
ESKLCVVKGDVLKHELPYFDVCVANTPYQISSPLLFRLLSHPTPFRCAVL
MFQREFAQRLTARPGDTMYCRLSVNVQLLARVSHLMKVARNNFRPPPKVE
SSVVRVEPRRPRPEVDFAEWDALLKLCFQRKHRMLRAVFGQKKVLNALLR
LRNSRRAAGKTGGEGSVASGVMQLAEDCEMRMDDAQDAQMHDDTEFDAYV
DDDDGDEAADGMDVEFVKKTKGGTRKDGGVQHELKSAVDAVWQETDFGTL
RAAQMSIDDFQRLLKMFHKHHIFFS*
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spliced messenger RNA

>Gcaud2000.t1 ID=Gcaud2000.t1|Name=Gcaud2000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:66376..67503- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCGCATCTCCAAGAAGCCGCGTCGCCCACCCGGCGCGCAGGCCAC
CGCCACGCTCGGCCACCGCGGTATCTCCTTCCAGAAGACGCACGGACAGC
ACATCCTACGCAACCCGCGACTCGCCGACGCCATCATCGCCAAATGCGCG
CTAAAGTCCACCGACGTCGTGCTGGAGGTGGGACCTGGCACAGGCAATCT
CTCTGTTCGCGTGCTGCCGCTCTGTAAGAAGCTGCTCGCGTACGAGCTCG
ACTCGCGCATGATCGTCGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGCAAGCTGTGCGTCGTGAAGGGCGATGTGCTCAAACACGAGCTACC
TTACTTTGATGTTTGTGTTGCCAACACTCCGTATCAGATCTCTTCGCCGT
TGCTGTTCAGGCTGCTTTCTCACCCGACGCCGTTCCGCTGCGCTGTGCTC
ATGTTTCAGCGCGAGTTTGCACAGCGACTAACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCTGTGAACGTGCAACTGTTGGCGAGGGTGTCCC
ATCTCATGAAGGTGGCGCGCAACAACTTTCGCCCGCCACCGAAGGTGGAG
TCTTCTGTCGTACGGGTCGAGCCGCGGAGGCCAAGACCCGAAGTGGATTT
TGCAGAGTGGGATGCACTGCTCAAGTTGTGTTTTCAGCGGAAACATCGCA
TGCTGCGCGCGGTGTTTGGACAGAAGAAGGTGCTTAACGCGCTGCTGCGG
CTGAGAAACAGTAGGCGCGCAGCCGGGAAGACGGGCGGCGAGGGCTCTGT
GGCGAGCGGCGTGATGCAGCTGGCGGAAGACTGTGAGATGCGCATGGACG
ACGCTCAGGACGCTCAGATGCACGATGATACCGAGTTCGACGCGTATGTT
GACGATGACGACGGCGATGAAGCGGCGGATGGCATGGACGTGGAGTTCGT
GAAGAAGACAAAGGGCGGCACCAGGAAGGACGGCGGCGTGCAGCACGAGC
TCAAGAGCGCGGTTGACGCCGTATGGCAAGAGACCGATTTCGGCACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGATGTT
TCACAAGCACCACATCTTCTTCTCGTAA
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protein sequence of Gcaud2000.t1

>Gcaud2000.t1 ID=Gcaud2000.t1|Name=Gcaud2000.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=376bp
MGRISKKPRRPPGAQATATLGHRGISFQKTHGQHILRNPRLADAIIAKCA
LKSTDVVLEVGPGTGNLSVRVLPLCKKLLAYELDSRMIVELYKRVQATAH
ESKLCVVKGDVLKHELPYFDVCVANTPYQISSPLLFRLLSHPTPFRCAVL
MFQREFAQRLTARPGDTMYCRLSVNVQLLARVSHLMKVARNNFRPPPKVE
SSVVRVEPRRPRPEVDFAEWDALLKLCFQRKHRMLRAVFGQKKVLNALLR
LRNSRRAAGKTGGEGSVASGVMQLAEDCEMRMDDAQDAQMHDDTEFDAYV
DDDDGDEAADGMDVEFVKKTKGGTRKDGGVQHELKSAVDAVWQETDFGTL
RAAQMSIDDFQRLLKMFHKHHIFFS*
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mRNA from alignment at NODE_5_length_105932_cov_4.447794:66376..67503-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2000.t1 ID=Gcaud2000.t1|Name=Gcaud2000.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:66376..67503- (Gracilaria caudata M_176_S67 male)
ATGGGCCGCATCTCCAAGAAGCCGCGTCGCCCACCCGGCGCGCAGGCCAC
CGCCACGCTCGGCCACCGCGGTATCTCCTTCCAGAAGACGCACGGACAGC
ACATCCTACGCAACCCGCGACTCGCCGACGCCATCATCGCCAAATGCGCG
CTAAAGTCCACCGACGTCGTGCTGGAGGTGGGACCTGGCACAGGCAATCT
CTCTGTTCGCGTGCTGCCGCTCTGTAAGAAGCTGCTCGCGTACGAGCTCG
ACTCGCGCATGATCGTCGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGCAAGCTGTGCGTCGTGAAGGGCGATGTGCTCAAACACGAGCTACC
TTACTTTGATGTTTGTGTTGCCAACACTCCGTATCAGATCTCTTCGCCGT
TGCTGTTCAGGCTGCTTTCTCACCCGACGCCGTTCCGCTGCGCTGTGCTC
ATGTTTCAGCGCGAGTTTGCACAGCGACTAACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCTGTGAACGTGCAACTGTTGGCGAGGGTGTCCC
ATCTCATGAAGGTGGCGCGCAACAACTTTCGCCCGCCACCGAAGGTGGAG
TCTTCTGTCGTACGGGTCGAGCCGCGGAGGCCAAGACCCGAAGTGGATTT
TGCAGAGTGGGATGCACTGCTCAAGTTGTGTTTTCAGCGGAAACATCGCA
TGCTGCGCGCGGTGTTTGGACAGAAGAAGGTGCTTAACGCGCTGCTGCGG
CTGAGAAACAGTAGGCGCGCAGCCGGGAAGACGGGCGGCGAGGGCTCTGT
GGCGAGCGGCGTGATGCAGCTGGCGGAAGACTGTGAGATGCGCATGGACG
ACGCTCAGGACGCTCAGATGCACGATGATACCGAGTTCGACGCGTATGTT
GACGATGACGACGGCGATGAAGCGGCGGATGGCATGGACGTGGAGTTCGT
GAAGAAGACAAAGGGCGGCACCAGGAAGGACGGCGGCGTGCAGCACGAGC
TCAAGAGCGCGGTTGACGCCGTATGGCAAGAGACCGATTTCGGCACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGATGTT
TCACAAGCACCACATCTTCTTCTCGTAA
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Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:66376..67503-

>Gcaud2000.t1 ID=Gcaud2000.t1|Name=Gcaud2000.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1128bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:66376..67503- (Gracilaria caudata M_176_S67 male)
ATGGGCCGCATCTCCAAGAAGCCGCGTCGCCCACCCGGCGCGCAGGCCAC
CGCCACGCTCGGCCACCGCGGTATCTCCTTCCAGAAGACGCACGGACAGC
ACATCCTACGCAACCCGCGACTCGCCGACGCCATCATCGCCAAATGCGCG
CTAAAGTCCACCGACGTCGTGCTGGAGGTGGGACCTGGCACAGGCAATCT
CTCTGTTCGCGTGCTGCCGCTCTGTAAGAAGCTGCTCGCGTACGAGCTCG
ACTCGCGCATGATCGTCGAGCTGTACAAGCGCGTGCAGGCCACTGCGCAC
GAGAGCAAGCTGTGCGTCGTGAAGGGCGATGTGCTCAAACACGAGCTACC
TTACTTTGATGTTTGTGTTGCCAACACTCCGTATCAGATCTCTTCGCCGT
TGCTGTTCAGGCTGCTTTCTCACCCGACGCCGTTCCGCTGCGCTGTGCTC
ATGTTTCAGCGCGAGTTTGCACAGCGACTAACCGCGAGGCCGGGCGACAC
CATGTACTGCAGGCTGTCTGTGAACGTGCAACTGTTGGCGAGGGTGTCCC
ATCTCATGAAGGTGGCGCGCAACAACTTTCGCCCGCCACCGAAGGTGGAG
TCTTCTGTCGTACGGGTCGAGCCGCGGAGGCCAAGACCCGAAGTGGATTT
TGCAGAGTGGGATGCACTGCTCAAGTTGTGTTTTCAGCGGAAACATCGCA
TGCTGCGCGCGGTGTTTGGACAGAAGAAGGTGCTTAACGCGCTGCTGCGG
CTGAGAAACAGTAGGCGCGCAGCCGGGAAGACGGGCGGCGAGGGCTCTGT
GGCGAGCGGCGTGATGCAGCTGGCGGAAGACTGTGAGATGCGCATGGACG
ACGCTCAGGACGCTCAGATGCACGATGATACCGAGTTCGACGCGTATGTT
GACGATGACGACGGCGATGAAGCGGCGGATGGCATGGACGTGGAGTTCGT
GAAGAAGACAAAGGGCGGCACCAGGAAGGACGGCGGCGTGCAGCACGAGC
TCAAGAGCGCGGTTGACGCCGTATGGCAAGAGACCGATTTCGGCACGCTG
CGCGCCGCGCAGATGAGTATTGACGACTTTCAACGGCTGTTGAAGATGTT
TCACAAGCACCACATCTTCTTCTCGTAA
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