Gcaud1997.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1997.t1
Unique Name	Gcaud1997.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	485

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:57471..58925 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	583355.Caka_0059
PFAMs	Big_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl	2\|Bacteria
KEGG ko	ko:K20846
Evalue	6.76e-54
EggNOG OGs	COG2273@1\|root,COG2273@2\|Bacteria
EC	3.2.1.83
Description	xyloglucan:xyloglucosyl transferase activity
COG category	G
CAZy	GH16
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1997	Gcaud1997	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 57471..58925 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1997.t1.stop1	Gcaud1997.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 57471..57473 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1997.t1.CDS1	Gcaud1997.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 57471..58925 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1997.t1.exon1	Gcaud1997.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 57471..58925 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1997.t1.start1	Gcaud1997.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 58923..58925 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1997.t1	Gcaud1997.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 57471..58925 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:57471..58925-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:57471..58925-

mRNA sequence

>Gcaud1997.t1 ID=Gcaud1997.t1|Name=Gcaud1997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=485bp
MKNMNKLLKFSLALLTLLITIAECKKPLLKDNLFKKFRFIPKEDFTDEFR
GRRFDLDKWHDINPRWKGRQPGLFATKNVKQRKGELRLRGRYEKNDKPFE
DAPEGYGNYTTAFVQTRKKARFGYFEVRAKPSNSRLSSSFWGSLDTPKLW
TEIDVYEIGGGAVNDGVDFRKRINMNLHVFRNKRKGINPGENEIDKPTYY
THSKKLRSKFNTYGLDWSKRYITWTFNGRAIRKDRNYNWKQAFPMKFDVE
TMPFWFGLPSKDTLPAVYKIKYIRAWTRKRKRKGDQNKTERQLSTDMLPV
TSLTTGVDSSEVDQDDDEDDEADMEIEDMNSEPETEAPVDGLQRPPIPGS
NERVYAPVLPLRGGSWAPFVEQMNMNLEDVAGTIFDSDEHINMADFEDEI
VNFNSVQLPTVPVSASEDEPSEVEPSSVVSGGDVGMALPLGSLGRPDRTR
STGGGGGVTGTDNSGGRGFGRVAGGLQLPAFGGF*

spliced messenger RNA

>Gcaud1997.t1 ID=Gcaud1997.t1|Name=Gcaud1997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:57471..58925- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACATGAACAAGCTTCTAAAATTCTCCCTCGCGCTGCTAACGCT
CCTAATAACGATTGCAGAGTGCAAGAAACCACTGCTGAAGGACAATTTGT
TCAAGAAATTCAGATTTATACCCAAGGAAGACTTCACAGATGAATTCAGA
GGTCGGAGATTCGACCTTGACAAATGGCACGACATCAACCCCAGGTGGAA
AGGGAGACAGCCCGGATTATTTGCAACCAAAAACGTTAAGCAACGAAAAG
GAGAGCTAAGGTTACGCGGTCGATATGAGAAAAATGACAAACCGTTTGAA
GATGCGCCAGAAGGATATGGAAACTACACCACGGCGTTCGTACAAACACG
AAAGAAGGCAAGGTTTGGATACTTTGAAGTGCGAGCCAAGCCATCAAATT
CGAGATTGTCGTCGTCCTTCTGGGGTTCTCTTGATACGCCCAAACTGTGG
ACTGAAATTGATGTGTACGAAATCGGTGGGGGTGCAGTAAACGATGGAGT
AGACTTTCGCAAGCGTATCAACATGAATCTGCACGTGTTTCGCAACAAGA
GGAAAGGAATTAACCCGGGTGAGAATGAAATTGACAAACCGACTTATTAC
ACACACAGCAAAAAGCTACGCTCCAAGTTCAACACATACGGGCTGGACTG
GAGCAAGAGGTATATCACATGGACTTTCAATGGGCGTGCGATTCGAAAAG
ACCGTAACTACAATTGGAAACAAGCGTTTCCTATGAAGTTTGATGTTGAG
ACAATGCCGTTTTGGTTCGGTCTGCCGTCTAAGGACACATTGCCTGCGGT
CTACAAAATCAAGTACATTCGCGCCTGGACAAGAAAAAGGAAGAGGAAGG
GGGACCAAAACAAGACAGAGCGTCAATTAAGTACAGACATGTTACCAGTA
ACTTCATTGACGACAGGCGTAGATAGCAGCGAGGTGGACCAAGACGACGA
TGAAGACGACGAAGCAGATATGGAAATCGAAGATATGAACTCTGAACCAG
AAACAGAAGCGCCCGTGGACGGTTTACAACGACCTCCAATCCCAGGAAGT
AACGAGCGAGTTTACGCGCCTGTTTTGCCGCTTAGGGGCGGCTCATGGGC
ACCTTTCGTAGAACAGATGAACATGAATCTAGAAGACGTTGCAGGAACGA
TATTTGATAGCGATGAACATATTAACATGGCCGACTTCGAGGACGAAATT
GTGAACTTCAACAGCGTGCAGCTTCCTACAGTGCCGGTGAGTGCGAGTGA
GGACGAGCCGAGCGAGGTGGAGCCGAGCAGCGTTGTGAGCGGCGGTGACG
TGGGAATGGCGCTGCCATTGGGCTCTTTGGGACGTCCGGATCGAACGCGT
TCAACGGGCGGCGGAGGCGGTGTGACTGGGACGGACAATAGCGGCGGACG
AGGGTTTGGCCGGGTTGCCGGCGGGCTGCAGCTTCCAGCCTTCGGGGGAT
TTTAG

protein sequence of Gcaud1997.t1

>Gcaud1997.t1 ID=Gcaud1997.t1|Name=Gcaud1997.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=485bp
MKNMNKLLKFSLALLTLLITIAECKKPLLKDNLFKKFRFIPKEDFTDEFR
GRRFDLDKWHDINPRWKGRQPGLFATKNVKQRKGELRLRGRYEKNDKPFE
DAPEGYGNYTTAFVQTRKKARFGYFEVRAKPSNSRLSSSFWGSLDTPKLW
TEIDVYEIGGGAVNDGVDFRKRINMNLHVFRNKRKGINPGENEIDKPTYY
THSKKLRSKFNTYGLDWSKRYITWTFNGRAIRKDRNYNWKQAFPMKFDVE
TMPFWFGLPSKDTLPAVYKIKYIRAWTRKRKRKGDQNKTERQLSTDMLPV
TSLTTGVDSSEVDQDDDEDDEADMEIEDMNSEPETEAPVDGLQRPPIPGS
NERVYAPVLPLRGGSWAPFVEQMNMNLEDVAGTIFDSDEHINMADFEDEI
VNFNSVQLPTVPVSASEDEPSEVEPSSVVSGGDVGMALPLGSLGRPDRTR
STGGGGGVTGTDNSGGRGFGRVAGGLQLPAFGGF*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:57471..58925-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1997.t1 ID=Gcaud1997.t1|Name=Gcaud1997.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:57471..58925- (Gracilaria caudata M_176_S67 male)
ATGAAGAACATGAACAAGCTTCTAAAATTCTCCCTCGCGCTGCTAACGCT
CCTAATAACGATTGCAGAGTGCAAGAAACCACTGCTGAAGGACAATTTGT
TCAAGAAATTCAGATTTATACCCAAGGAAGACTTCACAGATGAATTCAGA
GGTCGGAGATTCGACCTTGACAAATGGCACGACATCAACCCCAGGTGGAA
AGGGAGACAGCCCGGATTATTTGCAACCAAAAACGTTAAGCAACGAAAAG
GAGAGCTAAGGTTACGCGGTCGATATGAGAAAAATGACAAACCGTTTGAA
GATGCGCCAGAAGGATATGGAAACTACACCACGGCGTTCGTACAAACACG
AAAGAAGGCAAGGTTTGGATACTTTGAAGTGCGAGCCAAGCCATCAAATT
CGAGATTGTCGTCGTCCTTCTGGGGTTCTCTTGATACGCCCAAACTGTGG
ACTGAAATTGATGTGTACGAAATCGGTGGGGGTGCAGTAAACGATGGAGT
AGACTTTCGCAAGCGTATCAACATGAATCTGCACGTGTTTCGCAACAAGA
GGAAAGGAATTAACCCGGGTGAGAATGAAATTGACAAACCGACTTATTAC
ACACACAGCAAAAAGCTACGCTCCAAGTTCAACACATACGGGCTGGACTG
GAGCAAGAGGTATATCACATGGACTTTCAATGGGCGTGCGATTCGAAAAG
ACCGTAACTACAATTGGAAACAAGCGTTTCCTATGAAGTTTGATGTTGAG
ACAATGCCGTTTTGGTTCGGTCTGCCGTCTAAGGACACATTGCCTGCGGT
CTACAAAATCAAGTACATTCGCGCCTGGACAAGAAAAAGGAAGAGGAAGG
GGGACCAAAACAAGACAGAGCGTCAATTAAGTACAGACATGTTACCAGTA
ACTTCATTGACGACAGGCGTAGATAGCAGCGAGGTGGACCAAGACGACGA
TGAAGACGACGAAGCAGATATGGAAATCGAAGATATGAACTCTGAACCAG
AAACAGAAGCGCCCGTGGACGGTTTACAACGACCTCCAATCCCAGGAAGT
AACGAGCGAGTTTACGCGCCTGTTTTGCCGCTTAGGGGCGGCTCATGGGC
ACCTTTCGTAGAACAGATGAACATGAATCTAGAAGACGTTGCAGGAACGA
TATTTGATAGCGATGAACATATTAACATGGCCGACTTCGAGGACGAAATT
GTGAACTTCAACAGCGTGCAGCTTCCTACAGTGCCGGTGAGTGCGAGTGA
GGACGAGCCGAGCGAGGTGGAGCCGAGCAGCGTTGTGAGCGGCGGTGACG
TGGGAATGGCGCTGCCATTGGGCTCTTTGGGACGTCCGGATCGAACGCGT
TCAACGGGCGGCGGAGGCGGTGTGACTGGGACGGACAATAGCGGCGGACG
AGGGTTTGGCCGGGTTGCCGGCGGGCTGCAGCTTCCAGCCTTCGGGGGAT
TTTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:57471..58925-

>Gcaud1997.t1 ID=Gcaud1997.t1|Name=Gcaud1997.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1455bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:57471..58925- (Gracilaria caudata M_176_S67 male)
ATGAAGAACATGAACAAGCTTCTAAAATTCTCCCTCGCGCTGCTAACGCT
CCTAATAACGATTGCAGAGTGCAAGAAACCACTGCTGAAGGACAATTTGT
TCAAGAAATTCAGATTTATACCCAAGGAAGACTTCACAGATGAATTCAGA
GGTCGGAGATTCGACCTTGACAAATGGCACGACATCAACCCCAGGTGGAA
AGGGAGACAGCCCGGATTATTTGCAACCAAAAACGTTAAGCAACGAAAAG
GAGAGCTAAGGTTACGCGGTCGATATGAGAAAAATGACAAACCGTTTGAA
GATGCGCCAGAAGGATATGGAAACTACACCACGGCGTTCGTACAAACACG
AAAGAAGGCAAGGTTTGGATACTTTGAAGTGCGAGCCAAGCCATCAAATT
CGAGATTGTCGTCGTCCTTCTGGGGTTCTCTTGATACGCCCAAACTGTGG
ACTGAAATTGATGTGTACGAAATCGGTGGGGGTGCAGTAAACGATGGAGT
AGACTTTCGCAAGCGTATCAACATGAATCTGCACGTGTTTCGCAACAAGA
GGAAAGGAATTAACCCGGGTGAGAATGAAATTGACAAACCGACTTATTAC
ACACACAGCAAAAAGCTACGCTCCAAGTTCAACACATACGGGCTGGACTG
GAGCAAGAGGTATATCACATGGACTTTCAATGGGCGTGCGATTCGAAAAG
ACCGTAACTACAATTGGAAACAAGCGTTTCCTATGAAGTTTGATGTTGAG
ACAATGCCGTTTTGGTTCGGTCTGCCGTCTAAGGACACATTGCCTGCGGT
CTACAAAATCAAGTACATTCGCGCCTGGACAAGAAAAAGGAAGAGGAAGG
GGGACCAAAACAAGACAGAGCGTCAATTAAGTACAGACATGTTACCAGTA
ACTTCATTGACGACAGGCGTAGATAGCAGCGAGGTGGACCAAGACGACGA
TGAAGACGACGAAGCAGATATGGAAATCGAAGATATGAACTCTGAACCAG
AAACAGAAGCGCCCGTGGACGGTTTACAACGACCTCCAATCCCAGGAAGT
AACGAGCGAGTTTACGCGCCTGTTTTGCCGCTTAGGGGCGGCTCATGGGC
ACCTTTCGTAGAACAGATGAACATGAATCTAGAAGACGTTGCAGGAACGA
TATTTGATAGCGATGAACATATTAACATGGCCGACTTCGAGGACGAAATT
GTGAACTTCAACAGCGTGCAGCTTCCTACAGTGCCGGTGAGTGCGAGTGA
GGACGAGCCGAGCGAGGTGGAGCCGAGCAGCGTTGTGAGCGGCGGTGACG
TGGGAATGGCGCTGCCATTGGGCTCTTTGGGACGTCCGGATCGAACGCGT
TCAACGGGCGGCGGAGGCGGTGTGACTGGGACGGACAATAGCGGCGGACG
AGGGTTTGGCCGGGTTGCCGGCGGGCTGCAGCTTCCAGCCTTCGGGGGAT
TTTAG