Gcaud2006.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2006.t1
Unique Name	Gcaud2006.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:80406..81353 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2903.EOD16354
PFAMs	MTS,Methyltransf_11,Methyltransf_25
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06983
Evalue	7.78e-67
EggNOG OGs	COG2521@1\|root,2S1AS@2759\|Eukaryota
Description	Pfam:Methyltransf_26
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2006	Gcaud2006	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 80406..81353 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1	Gcaud2006.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 80406..81353 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1.stop1	Gcaud2006.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 80406..80408 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1.CDS1	Gcaud2006.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 80406..80443 -
Gcaud2006.t1.CDS2	Gcaud2006.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 80744..81353 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1.exon1	Gcaud2006.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 80406..80443 -
Gcaud2006.t1.exon2	Gcaud2006.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 80744..81353 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1.intron1	Gcaud2006.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_5_length_105932_cov_4.447794 80444..80743 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2006.t1.start1	Gcaud2006.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 81351..81353 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-

mRNA sequence

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp
MSELTNRVASLMPVAPAAPPTLLLAGFTMHRVKSVDPGADTARKMTAIGC
VRGRVLDVCTGLGYTAMAAARCADVTQVTTIELDPVVLAIARRNPWSRAL
FSEPLIDSICADATCVLPTLHDKSFDVIIHDPPARVLGGDLYSLSFYEQL
RRVCTRSGTLFHYVGDPNSRESGRLYRGIVDRLQKAGFSNIQRRPDAYGL
VASSPLKQPHSWHNA*

spliced messenger RNA

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA

protein sequence of Gcaud2006.t1

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=216bp
MSELTNRVASLMPVAPAAPPTLLLAGFTMHRVKSVDPGADTARKMTAIGC
VRGRVLDVCTGLGYTAMAAARCADVTQVTTIELDPVVLAIARRNPWSRAL
FSEPLIDSICADATCVLPTLHDKSFDVIIHDPPARVLGGDLYSLSFYEQL
RRVCTRSGTLFHYVGDPNSRESGRLYRGIVDRLQKAGFSNIQRRPDAYGL
VASSPLKQPHSWHNA*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTGTACGTGATGTACTTCTTCGTTCGCCGTTGTGCGACGTGG
CTGCAAAATGCATTTGTTGGATTGATTTCTCACAAGTGAACAGTCAGTTG
CAATTGAAGGCTCGTTCACATAAGCTTTGCTCAACGCGAGCGGTTGCATC
GCAGCGGTTGCATCATACCGAACTATCTATCACAGACTGACAACACGCCG
CAGAGAAATCAGGCACGCAGCGCAGGAAACGACAATGCCCATCTGCACCA
GCAGTGCCCAAGCCTTACTAAACGTCTAACGTCTGGTTGTTTTCTCTCGT
ACACGCGCAGCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:80406..81353-

>Gcaud2006.t1 ID=Gcaud2006.t1|Name=Gcaud2006.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=648bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:80406..81353- (Gracilaria caudata M_176_S67 male)
ATGAGCGAGCTCACGAACCGCGTGGCGTCGCTGATGCCCGTTGCGCCGGC
CGCGCCGCCCACGTTGCTCTTGGCGGGCTTCACCATGCATCGCGTGAAGA
GCGTTGATCCGGGTGCGGACACGGCACGCAAGATGACGGCGATTGGCTGC
GTGCGTGGGCGCGTTTTGGATGTGTGTACGGGCTTGGGTTATACGGCGAT
GGCCGCGGCGCGTTGCGCGGATGTCACGCAGGTCACAACCATAGAGCTTG
ATCCCGTGGTTCTGGCTATCGCGCGACGGAACCCTTGGTCGCGCGCGCTG
TTTAGCGAGCCGCTTATCGACTCGATTTGCGCGGATGCTACTTGTGTTCT
GCCTACATTGCATGACAAGTCGTTCGATGTTATCATTCATGACCCGCCGG
CGCGCGTTTTGGGCGGCGATTTGTACTCTTTGTCGTTCTATGAGCAACTG
CGTCGGGTGTGTACACGTAGTGGCACGCTATTTCATTACGTCGGTGATCC
GAACAGTCGCGAGAGCGGAAGATTGTACCGCGGAATTGTGGATAGGCTAC
AGAAAGCGGGATTCTCGAACATTCAACGTAGGCCGGATGCATACGGTCTG
GTGGCAAGCTCGCCGCTCAAGCAGCCACACAGCTGGCACAACGCATGA