Gcaud2005.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2005.t1
Unique Name	Gcaud2005.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	345

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:78551..79585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4155.Migut.D00577.1.p
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
GOs	GO:0000003,GO:0000075,GO:0000151,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006282,GO:0006810,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0009555,GO:0009636,GO:0009663,GO:0009790,GO:0009791,GO:0009793,GO:0009908,GO:0009987,GO:0010035,GO:0010038,GO:0010044,GO:0010154,GO:0010162,GO:0010431,GO:0010496,GO:0010497,GO:0010564,GO:0016043,GO:0019219,GO:0019222,GO:0021700,GO:0022414,GO:0022611,GO:0031323,GO:0031461,GO:0031570,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034330,GO:0035670,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045216,GO:0045786,GO:0045787,GO:0048229,GO:0048316,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048700,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051716,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0071156,GO:0071158,GO:0071695,GO:0071840,GO:0072718,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090567,GO:0097327,GO:0097439,GO:0099402,GO:1902494,GO:1990234,GO:2000026,GO:2000280,GO:2001020
Evalue	2.5e-26
EggNOG OGs	COG2319@1\|root,KOG0322@2759\|Eukaryota,37IE2@33090\|Viridiplantae,3GF2H@35493\|Streptophyta,44F28@71274\|asterids
Description	Guanine nucleotide-binding protein subunit beta-like protein 1 homolog
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2005	Gcaud2005	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 78551..79585 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2005.t1.start1	Gcaud2005.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 78551..78553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2005.t1.CDS1	Gcaud2005.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 78551..79585 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2005.t1.exon1	Gcaud2005.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 78551..79585 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2005.t1.stop1	Gcaud2005.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 79583..79585 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2005.t1	Gcaud2005.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 78551..79585 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+

mRNA sequence

>Gcaud2005.t1 ID=Gcaud2005.t1|Name=Gcaud2005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp
MTKRQRPQARAVLRGHTAPITSLRFQKSDDTAHILYSGDENGNVRLWDCR
YEETVLLHNRHRAVEESAVLTILQDECDVGNVLVQYKCGVVTRLDVEYGV
RLNDFDAWSVKNVQIVKGDFRFDGYQKHAVLSNGFCSICYVGRALWAGAC
GDGDQVALLHDDREKVTMQKQLKIGSDMKKKGMVMSICKCQQDIITAYED
GSIATWDLRRCERPRNSVKVAPDAITSVAGSPFGRVGAAIGAFDKVVAVA
DVSETNAKIVEQVELRGGGGSQIVWRRDGRTLATGGWDGAVRVWDGRRKA
GRLLRPICSLRWHDSSVSCVDYSWDCELLASGGRDCCIVLWNAL*

spliced messenger RNA

>Gcaud2005.t1 ID=Gcaud2005.t1|Name=Gcaud2005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGCGGCAACGCCCTCAGGCCAGAGCGGTTCTGCGGGGACACAC
GGCGCCAATCACGTCACTGAGATTCCAGAAGAGCGACGACACAGCGCATA
TACTGTACAGCGGCGATGAGAATGGCAACGTCAGGTTGTGGGATTGTCGA
TATGAGGAAACTGTGTTACTGCACAACAGACATAGGGCAGTGGAAGAATC
GGCTGTGCTGACGATTTTGCAAGATGAATGCGACGTTGGCAACGTGCTTG
TGCAGTACAAATGCGGCGTTGTGACCAGATTGGACGTTGAGTACGGCGTG
CGATTGAATGATTTTGATGCCTGGAGTGTTAAGAATGTGCAGATTGTAAA
AGGAGATTTTCGTTTTGATGGATATCAGAAACATGCAGTTTTGAGCAACG
GTTTTTGTAGCATTTGTTACGTGGGAAGAGCGCTTTGGGCTGGAGCTTGT
GGTGATGGTGATCAAGTAGCACTTCTTCACGACGACCGTGAGAAAGTAAC
GATGCAAAAGCAGCTGAAAATCGGCAGCGATATGAAAAAGAAGGGAATGG
TAATGAGTATTTGTAAATGCCAACAAGACATAATCACAGCTTACGAAGAT
GGTTCTATAGCAACATGGGATTTGCGTCGTTGTGAACGTCCGAGAAACAG
CGTGAAAGTAGCACCTGATGCGATCACAAGCGTTGCAGGCAGTCCATTCG
GAAGGGTTGGCGCGGCGATTGGCGCGTTCGATAAGGTTGTGGCGGTGGCT
GATGTGAGTGAGACTAACGCTAAGATCGTTGAACAGGTGGAGTTGAGAGG
TGGTGGTGGCAGTCAAATCGTGTGGAGACGAGATGGACGCACGCTTGCTA
CCGGCGGTTGGGACGGTGCTGTTCGCGTCTGGGACGGCAGGCGAAAGGCT
GGACGATTACTGCGGCCGATTTGTTCATTGCGATGGCATGATTCAAGTGT
AAGTTGCGTCGATTATAGCTGGGATTGTGAATTACTTGCAAGTGGTGGTC
GTGATTGCTGCATAGTGCTATGGAACGCGCTGTGA

protein sequence of Gcaud2005.t1

>Gcaud2005.t1 ID=Gcaud2005.t1|Name=Gcaud2005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=345bp
MTKRQRPQARAVLRGHTAPITSLRFQKSDDTAHILYSGDENGNVRLWDCR
YEETVLLHNRHRAVEESAVLTILQDECDVGNVLVQYKCGVVTRLDVEYGV
RLNDFDAWSVKNVQIVKGDFRFDGYQKHAVLSNGFCSICYVGRALWAGAC
GDGDQVALLHDDREKVTMQKQLKIGSDMKKKGMVMSICKCQQDIITAYED
GSIATWDLRRCERPRNSVKVAPDAITSVAGSPFGRVGAAIGAFDKVVAVA
DVSETNAKIVEQVELRGGGGSQIVWRRDGRTLATGGWDGAVRVWDGRRKA
GRLLRPICSLRWHDSSVSCVDYSWDCELLASGGRDCCIVLWNAL*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2005.t1 ID=Gcaud2005.t1|Name=Gcaud2005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+ (Gracilaria caudata M_176_S67 male)
ATGACCAAGCGGCAACGCCCTCAGGCCAGAGCGGTTCTGCGGGGACACAC
GGCGCCAATCACGTCACTGAGATTCCAGAAGAGCGACGACACAGCGCATA
TACTGTACAGCGGCGATGAGAATGGCAACGTCAGGTTGTGGGATTGTCGA
TATGAGGAAACTGTGTTACTGCACAACAGACATAGGGCAGTGGAAGAATC
GGCTGTGCTGACGATTTTGCAAGATGAATGCGACGTTGGCAACGTGCTTG
TGCAGTACAAATGCGGCGTTGTGACCAGATTGGACGTTGAGTACGGCGTG
CGATTGAATGATTTTGATGCCTGGAGTGTTAAGAATGTGCAGATTGTAAA
AGGAGATTTTCGTTTTGATGGATATCAGAAACATGCAGTTTTGAGCAACG
GTTTTTGTAGCATTTGTTACGTGGGAAGAGCGCTTTGGGCTGGAGCTTGT
GGTGATGGTGATCAAGTAGCACTTCTTCACGACGACCGTGAGAAAGTAAC
GATGCAAAAGCAGCTGAAAATCGGCAGCGATATGAAAAAGAAGGGAATGG
TAATGAGTATTTGTAAATGCCAACAAGACATAATCACAGCTTACGAAGAT
GGTTCTATAGCAACATGGGATTTGCGTCGTTGTGAACGTCCGAGAAACAG
CGTGAAAGTAGCACCTGATGCGATCACAAGCGTTGCAGGCAGTCCATTCG
GAAGGGTTGGCGCGGCGATTGGCGCGTTCGATAAGGTTGTGGCGGTGGCT
GATGTGAGTGAGACTAACGCTAAGATCGTTGAACAGGTGGAGTTGAGAGG
TGGTGGTGGCAGTCAAATCGTGTGGAGACGAGATGGACGCACGCTTGCTA
CCGGCGGTTGGGACGGTGCTGTTCGCGTCTGGGACGGCAGGCGAAAGGCT
GGACGATTACTGCGGCCGATTTGTTCATTGCGATGGCATGATTCAAGTGT
AAGTTGCGTCGATTATAGCTGGGATTGTGAATTACTTGCAAGTGGTGGTC
GTGATTGCTGCATAGTGCTATGGAACGCGCTGTGA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+

>Gcaud2005.t1 ID=Gcaud2005.t1|Name=Gcaud2005.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1035bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:78551..79585+ (Gracilaria caudata M_176_S67 male)
ATGACCAAGCGGCAACGCCCTCAGGCCAGAGCGGTTCTGCGGGGACACAC
GGCGCCAATCACGTCACTGAGATTCCAGAAGAGCGACGACACAGCGCATA
TACTGTACAGCGGCGATGAGAATGGCAACGTCAGGTTGTGGGATTGTCGA
TATGAGGAAACTGTGTTACTGCACAACAGACATAGGGCAGTGGAAGAATC
GGCTGTGCTGACGATTTTGCAAGATGAATGCGACGTTGGCAACGTGCTTG
TGCAGTACAAATGCGGCGTTGTGACCAGATTGGACGTTGAGTACGGCGTG
CGATTGAATGATTTTGATGCCTGGAGTGTTAAGAATGTGCAGATTGTAAA
AGGAGATTTTCGTTTTGATGGATATCAGAAACATGCAGTTTTGAGCAACG
GTTTTTGTAGCATTTGTTACGTGGGAAGAGCGCTTTGGGCTGGAGCTTGT
GGTGATGGTGATCAAGTAGCACTTCTTCACGACGACCGTGAGAAAGTAAC
GATGCAAAAGCAGCTGAAAATCGGCAGCGATATGAAAAAGAAGGGAATGG
TAATGAGTATTTGTAAATGCCAACAAGACATAATCACAGCTTACGAAGAT
GGTTCTATAGCAACATGGGATTTGCGTCGTTGTGAACGTCCGAGAAACAG
CGTGAAAGTAGCACCTGATGCGATCACAAGCGTTGCAGGCAGTCCATTCG
GAAGGGTTGGCGCGGCGATTGGCGCGTTCGATAAGGTTGTGGCGGTGGCT
GATGTGAGTGAGACTAACGCTAAGATCGTTGAACAGGTGGAGTTGAGAGG
TGGTGGTGGCAGTCAAATCGTGTGGAGACGAGATGGACGCACGCTTGCTA
CCGGCGGTTGGGACGGTGCTGTTCGCGTCTGGGACGGCAGGCGAAAGGCT
GGACGATTACTGCGGCCGATTTGTTCATTGCGATGGCATGATTCAAGTGT
AAGTTGCGTCGATTATAGCTGGGATTGTGAATTACTTGCAAGTGGTGGTC
GTGATTGCTGCATAGTGCTATGGAACGCGCTGTGA