Gcaud1991.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1991.t1
Unique Name	Gcaud1991.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	631

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:36813..38705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1991	Gcaud1991	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 36813..38705 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1991.t1.start1	Gcaud1991.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 36813..36815 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1991.t1.CDS1	Gcaud1991.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 36813..38705 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1991.t1.exon1	Gcaud1991.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 36813..38705 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1991.t1.stop1	Gcaud1991.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 38703..38705 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1991.t1	Gcaud1991.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 36813..38705 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+

mRNA sequence

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=631bp
MSSEQRSEEAEEGANSSEHQPEATNESSHAGHDAPTSSPLPSMTDGVLQT
IGAHNGEPLSTVEWMMIKLLPQAATNHESCEQVLRVTRQSLRFDFILYDL
GLKPETKLLLQGRSSSSLMSAVRNVLYGFDQQCANELYATLSNINDAVCQ
FVCCSMLFVDKERDPFFTALDLDKVMNILSPQSLAVFAKMISFIRPAVQS
LRMSPVCDQMFVIVQEPLMQIVRATATSMRRLTVYLPDDQMVEVLRNARF
TLVALEELCLMMRGERIYHYNAPEASNAIHGLYARVSSICPRLKYVSLHN
GGAGSVPVVNMKWLPTSVDHIVNVRDTDLLRSVANCAGVRTITIHVANID
FGRFVLFEREGGFPQLERVNLVNCVLQEPKLQMHHASARLRACIRTIIND
PSDAIPYFPVEGLPWFVGDLPSLEVVELYLNTEADTSICESLVYAVNNLP
CLKSLTIQVWRTKLCEENVGGFRALLQMLEKSECELEHLRMPNMWACSSE
LYAFLESKGASLKTLDVKMHCGSCVNEETTSVLNWEDVVEVLRRLADSCP
RILNASVAESDVLQRALDTNRREFESCVSHEKGGKLKRMWEQVVLGFDRE
KVSCEILRDAMRDVFRERMRCADEGKKSWS*

spliced messenger RNA

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGCGAACAACGCAGTGAAGAAGCAGAGGAGGGAGCCAACAGCTC
CGAACACCAGCCAGAGGCTACGAATGAGAGTAGCCATGCCGGTCACGATG
CACCAACTTCTTCTCCCTTGCCCTCGATGACGGACGGAGTTTTGCAAACA
ATCGGCGCTCATAATGGAGAACCTTTAAGCACTGTGGAGTGGATGATGAT
CAAGTTATTACCCCAAGCAGCTACAAACCATGAGTCATGTGAGCAAGTGT
TACGCGTCACGCGGCAGAGTCTTCGCTTCGACTTCATACTGTATGACCTG
GGTCTAAAGCCTGAAACAAAGTTGTTGCTTCAAGGCAGGTCTTCTTCCTC
CCTCATGAGCGCCGTTCGCAATGTGCTTTACGGATTTGATCAACAGTGTG
CGAATGAATTATACGCGACCCTTTCCAACATCAACGATGCAGTGTGTCAA
TTTGTCTGTTGCTCGATGCTTTTTGTCGACAAAGAGAGAGATCCTTTCTT
CACAGCGCTGGATCTTGATAAGGTGATGAACATTCTCTCACCACAGTCAC
TAGCTGTGTTTGCGAAGATGATCAGTTTCATTAGGCCAGCTGTACAGTCT
CTTCGCATGTCCCCCGTTTGCGATCAGATGTTTGTGATCGTTCAGGAGCC
ATTGATGCAAATTGTGCGCGCCACTGCCACATCGATGCGTCGACTGACTG
TGTATCTACCAGATGACCAGATGGTGGAAGTGTTGCGGAATGCAAGGTTC
ACGCTTGTGGCGTTAGAAGAGCTTTGTCTCATGATGCGCGGAGAACGTAT
CTACCATTATAACGCACCAGAAGCTTCCAACGCCATTCATGGGTTGTATG
CACGCGTAAGCTCCATATGTCCGCGGCTCAAGTACGTTTCACTCCACAAT
GGAGGAGCGGGTAGCGTACCGGTTGTGAACATGAAATGGCTTCCCACTTC
GGTGGATCACATTGTGAACGTCAGAGACACCGATCTTCTCCGAAGCGTTG
CGAACTGTGCAGGAGTGAGGACAATAACGATACATGTGGCCAACATCGAC
TTTGGAAGGTTTGTGCTGTTCGAACGCGAAGGCGGGTTTCCACAGCTGGA
GCGCGTGAACTTGGTAAATTGCGTACTGCAGGAGCCGAAGTTGCAGATGC
ATCATGCGTCAGCACGATTGAGAGCATGCATTCGCACGATAATCAATGAC
CCGTCGGATGCCATTCCATACTTCCCAGTAGAAGGATTACCATGGTTTGT
TGGAGATCTTCCATCGCTCGAAGTGGTTGAATTGTATTTGAACACTGAAG
CGGATACTTCAATCTGCGAATCGCTTGTATATGCGGTGAATAACTTGCCT
TGCTTGAAATCACTCACGATTCAAGTGTGGCGGACCAAACTGTGCGAGGA
AAACGTTGGAGGGTTTAGAGCATTGCTGCAAATGTTAGAGAAGAGTGAGT
GTGAGTTGGAACACTTGAGAATGCCGAATATGTGGGCGTGCAGCAGCGAG
CTTTATGCATTCCTCGAGAGCAAGGGAGCTTCATTGAAGACTCTGGACGT
GAAGATGCATTGCGGCAGCTGCGTTAATGAGGAAACGACGTCGGTTTTGA
ATTGGGAGGATGTGGTTGAAGTGTTGCGGCGTTTGGCGGATTCCTGTCCC
AGAATTTTGAACGCGAGCGTTGCGGAGAGCGACGTGTTACAGAGAGCATT
GGATACGAATCGAAGAGAGTTTGAAAGTTGCGTTTCGCACGAGAAAGGCG
GGAAATTGAAACGAATGTGGGAACAGGTGGTGCTGGGGTTTGATAGAGAG
AAGGTCAGTTGCGAAATTCTGCGGGATGCGATGCGGGACGTATTTAGGGA
GCGGATGCGATGTGCAGACGAGGGCAAGAAGAGTTGGTCTTAG

protein sequence of Gcaud1991.t1

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=631bp
MSSEQRSEEAEEGANSSEHQPEATNESSHAGHDAPTSSPLPSMTDGVLQT
IGAHNGEPLSTVEWMMIKLLPQAATNHESCEQVLRVTRQSLRFDFILYDL
GLKPETKLLLQGRSSSSLMSAVRNVLYGFDQQCANELYATLSNINDAVCQ
FVCCSMLFVDKERDPFFTALDLDKVMNILSPQSLAVFAKMISFIRPAVQS
LRMSPVCDQMFVIVQEPLMQIVRATATSMRRLTVYLPDDQMVEVLRNARF
TLVALEELCLMMRGERIYHYNAPEASNAIHGLYARVSSICPRLKYVSLHN
GGAGSVPVVNMKWLPTSVDHIVNVRDTDLLRSVANCAGVRTITIHVANID
FGRFVLFEREGGFPQLERVNLVNCVLQEPKLQMHHASARLRACIRTIIND
PSDAIPYFPVEGLPWFVGDLPSLEVVELYLNTEADTSICESLVYAVNNLP
CLKSLTIQVWRTKLCEENVGGFRALLQMLEKSECELEHLRMPNMWACSSE
LYAFLESKGASLKTLDVKMHCGSCVNEETTSVLNWEDVVEVLRRLADSCP
RILNASVAESDVLQRALDTNRREFESCVSHEKGGKLKRMWEQVVLGFDRE
KVSCEILRDAMRDVFRERMRCADEGKKSWS*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1893bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+ (Gracilaria caudata M_176_S67 male)
ATGAGCAGCGAACAACGCAGTGAAGAAGCAGAGGAGGGAGCCAACAGCTC
CGAACACCAGCCAGAGGCTACGAATGAGAGTAGCCATGCCGGTCACGATG
CACCAACTTCTTCTCCCTTGCCCTCGATGACGGACGGAGTTTTGCAAACA
ATCGGCGCTCATAATGGAGAACCTTTAAGCACTGTGGAGTGGATGATGAT
CAAGTTATTACCCCAAGCAGCTACAAACCATGAGTCATGTGAGCAAGTGT
TACGCGTCACGCGGCAGAGTCTTCGCTTCGACTTCATACTGTATGACCTG
GGTCTAAAGCCTGAAACAAAGTTGTTGCTTCAAGGCAGGTCTTCTTCCTC
CCTCATGAGCGCCGTTCGCAATGTGCTTTACGGATTTGATCAACAGTGTG
CGAATGAATTATACGCGACCCTTTCCAACATCAACGATGCAGTGTGTCAA
TTTGTCTGTTGCTCGATGCTTTTTGTCGACAAAGAGAGAGATCCTTTCTT
CACAGCGCTGGATCTTGATAAGGTGATGAACATTCTCTCACCACAGTCAC
TAGCTGTGTTTGCGAAGATGATCAGTTTCATTAGGCCAGCTGTACAGTCT
CTTCGCATGTCCCCCGTTTGCGATCAGATGTTTGTGATCGTTCAGGAGCC
ATTGATGCAAATTGTGCGCGCCACTGCCACATCGATGCGTCGACTGACTG
TGTATCTACCAGATGACCAGATGGTGGAAGTGTTGCGGAATGCAAGGTTC
ACGCTTGTGGCGTTAGAAGAGCTTTGTCTCATGATGCGCGGAGAACGTAT
CTACCATTATAACGCACCAGAAGCTTCCAACGCCATTCATGGGTTGTATG
CACGCGTAAGCTCCATATGTCCGCGGCTCAAGTACGTTTCACTCCACAAT
GGAGGAGCGGGTAGCGTACCGGTTGTGAACATGAAATGGCTTCCCACTTC
GGTGGATCACATTGTGAACGTCAGAGACACCGATCTTCTCCGAAGCGTTG
CGAACTGTGCAGGAGTGAGGACAATAACGATACATGTGGCCAACATCGAC
TTTGGAAGGTTTGTGCTGTTCGAACGCGAAGGCGGGTTTCCACAGCTGGA
GCGCGTGAACTTGGTAAATTGCGTACTGCAGGAGCCGAAGTTGCAGATGC
ATCATGCGTCAGCACGATTGAGAGCATGCATTCGCACGATAATCAATGAC
CCGTCGGATGCCATTCCATACTTCCCAGTAGAAGGATTACCATGGTTTGT
TGGAGATCTTCCATCGCTCGAAGTGGTTGAATTGTATTTGAACACTGAAG
CGGATACTTCAATCTGCGAATCGCTTGTATATGCGGTGAATAACTTGCCT
TGCTTGAAATCACTCACGATTCAAGTGTGGCGGACCAAACTGTGCGAGGA
AAACGTTGGAGGGTTTAGAGCATTGCTGCAAATGTTAGAGAAGAGTGAGT
GTGAGTTGGAACACTTGAGAATGCCGAATATGTGGGCGTGCAGCAGCGAG
CTTTATGCATTCCTCGAGAGCAAGGGAGCTTCATTGAAGACTCTGGACGT
GAAGATGCATTGCGGCAGCTGCGTTAATGAGGAAACGACGTCGGTTTTGA
ATTGGGAGGATGTGGTTGAAGTGTTGCGGCGTTTGGCGGATTCCTGTCCC
AGAATTTTGAACGCGAGCGTTGCGGAGAGCGACGTGTTACAGAGAGCATT
GGATACGAATCGAAGAGAGTTTGAAAGTTGCGTTTCGCACGAGAAAGGCG
GGAAATTGAAACGAATGTGGGAACAGGTGGTGCTGGGGTTTGATAGAGAG
AAGGTCAGTTGCGAAATTCTGCGGGATGCGATGCGGGACGTATTTAGGGA
GCGGATGCGATGTGCAGACGAGGGCAAGAAGAGTTGGTCTTAG

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+

>Gcaud1991.t1 ID=Gcaud1991.t1|Name=Gcaud1991.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1893bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:36813..38705+ (Gracilaria caudata M_176_S67 male)
ATGAGCAGCGAACAACGCAGTGAAGAAGCAGAGGAGGGAGCCAACAGCTC
CGAACACCAGCCAGAGGCTACGAATGAGAGTAGCCATGCCGGTCACGATG
CACCAACTTCTTCTCCCTTGCCCTCGATGACGGACGGAGTTTTGCAAACA
ATCGGCGCTCATAATGGAGAACCTTTAAGCACTGTGGAGTGGATGATGAT
CAAGTTATTACCCCAAGCAGCTACAAACCATGAGTCATGTGAGCAAGTGT
TACGCGTCACGCGGCAGAGTCTTCGCTTCGACTTCATACTGTATGACCTG
GGTCTAAAGCCTGAAACAAAGTTGTTGCTTCAAGGCAGGTCTTCTTCCTC
CCTCATGAGCGCCGTTCGCAATGTGCTTTACGGATTTGATCAACAGTGTG
CGAATGAATTATACGCGACCCTTTCCAACATCAACGATGCAGTGTGTCAA
TTTGTCTGTTGCTCGATGCTTTTTGTCGACAAAGAGAGAGATCCTTTCTT
CACAGCGCTGGATCTTGATAAGGTGATGAACATTCTCTCACCACAGTCAC
TAGCTGTGTTTGCGAAGATGATCAGTTTCATTAGGCCAGCTGTACAGTCT
CTTCGCATGTCCCCCGTTTGCGATCAGATGTTTGTGATCGTTCAGGAGCC
ATTGATGCAAATTGTGCGCGCCACTGCCACATCGATGCGTCGACTGACTG
TGTATCTACCAGATGACCAGATGGTGGAAGTGTTGCGGAATGCAAGGTTC
ACGCTTGTGGCGTTAGAAGAGCTTTGTCTCATGATGCGCGGAGAACGTAT
CTACCATTATAACGCACCAGAAGCTTCCAACGCCATTCATGGGTTGTATG
CACGCGTAAGCTCCATATGTCCGCGGCTCAAGTACGTTTCACTCCACAAT
GGAGGAGCGGGTAGCGTACCGGTTGTGAACATGAAATGGCTTCCCACTTC
GGTGGATCACATTGTGAACGTCAGAGACACCGATCTTCTCCGAAGCGTTG
CGAACTGTGCAGGAGTGAGGACAATAACGATACATGTGGCCAACATCGAC
TTTGGAAGGTTTGTGCTGTTCGAACGCGAAGGCGGGTTTCCACAGCTGGA
GCGCGTGAACTTGGTAAATTGCGTACTGCAGGAGCCGAAGTTGCAGATGC
ATCATGCGTCAGCACGATTGAGAGCATGCATTCGCACGATAATCAATGAC
CCGTCGGATGCCATTCCATACTTCCCAGTAGAAGGATTACCATGGTTTGT
TGGAGATCTTCCATCGCTCGAAGTGGTTGAATTGTATTTGAACACTGAAG
CGGATACTTCAATCTGCGAATCGCTTGTATATGCGGTGAATAACTTGCCT
TGCTTGAAATCACTCACGATTCAAGTGTGGCGGACCAAACTGTGCGAGGA
AAACGTTGGAGGGTTTAGAGCATTGCTGCAAATGTTAGAGAAGAGTGAGT
GTGAGTTGGAACACTTGAGAATGCCGAATATGTGGGCGTGCAGCAGCGAG
CTTTATGCATTCCTCGAGAGCAAGGGAGCTTCATTGAAGACTCTGGACGT
GAAGATGCATTGCGGCAGCTGCGTTAATGAGGAAACGACGTCGGTTTTGA
ATTGGGAGGATGTGGTTGAAGTGTTGCGGCGTTTGGCGGATTCCTGTCCC
AGAATTTTGAACGCGAGCGTTGCGGAGAGCGACGTGTTACAGAGAGCATT
GGATACGAATCGAAGAGAGTTTGAAAGTTGCGTTTCGCACGAGAAAGGCG
GGAAATTGAAACGAATGTGGGAACAGGTGGTGCTGGGGTTTGATAGAGAG
AAGGTCAGTTGCGAAATTCTGCGGGATGCGATGCGGGACGTATTTAGGGA
GCGGATGCGATGTGCAGACGAGGGCAAGAAGAGTTGGTCTTAG