Gcaud1994.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1994.t1
Unique Name	Gcaud1994.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	615

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5_length_105932_cov_4.447794	contig	NODE_5_length_105932_cov_4.447794:47794..49700 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_67172
PFAMs	Amino_oxidase,zf-CW
Max annot lvl	2759\|Eukaryota
Evalue	4.74e-38
EggNOG OGs	COG1231@1\|root,KOG0029@2759\|Eukaryota
Description	oxidoreductase activity
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1994	Gcaud1994	Gracilaria caudata M_176_S67 male	gene	NODE_5_length_105932_cov_4.447794 47794..50895 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1	Gcaud1994.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5_length_105932_cov_4.447794 47794..49700 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1.start1	Gcaud1994.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5_length_105932_cov_4.447794 47794..47796 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1.CDS1	Gcaud1994.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 47794..49606 +
Gcaud1994.t1.CDS2	Gcaud1994.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_5_length_105932_cov_4.447794 49669..49700 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1.exon1	Gcaud1994.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 47794..49606 +
Gcaud1994.t1.exon2	Gcaud1994.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_5_length_105932_cov_4.447794 49669..49700 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1.intron1	Gcaud1994.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_5_length_105932_cov_4.447794 49607..49668 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1994.t1.stop1	Gcaud1994.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_5_length_105932_cov_4.447794 49698..49700 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+
coding sequence from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+

mRNA sequence

>Gcaud1994.t1 ID=Gcaud1994.t1|Name=Gcaud1994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=615bp
MSPVALPPAAAQPAPRVIIVGAGVAGLSCAQELVSSAPDVDVVVLEARNR
VGGRIFTHWLNVDEPAAPLHQASPPPSALSPTHQPDHASVITAVAGASDA
ASPVAALSSASSQFNDAAPLNHASQHPWYTPVHLNQDGTLSPSFPPPKTA
PSDSQLDGDSARASPHRHPFMDLVSGAIEPDRTSPNGCPRLSVDIGASIM
HGCADENQLVFKRAIQSRIRAPIVAGGSFYESTEHALWYDHKTGQRIPTE
TIVEMHNIFFMASRYMAAVASRSDDGAGDMQSIFDCGVEYVAEHMDNRKL
TPTECAVLKKICARSIGYCSPMSDMALMQASAGMEKAGTDAHIGIPYEED
DPPFPGEIPPMTQASIKAQAARFNRAIAATQKIPLNMIASKKGGAGDRIV
LDGYTPFLIDRLKQGLHIRLKQSVCSVSKAVKPRIDHALAMEEPHSSAHA
NRPAKRARTHTLSNWDADPEVAQRTILVTTRSGEVYQGDFVVIAIPLGVL
RSEHEESSVSFSPPLSIEKQEAIRGMGMGIHNKVVLRFREEDIFWPPKVP
QLNCLDPRFQFFNMHCYGKTATILVHVFCESGFANGFWDLTDEGVLAEVL
AVLGGITNCIKCDC*

spliced messenger RNA

>Gcaud1994.t1 ID=Gcaud1994.t1|Name=Gcaud1994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1845bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGTCGCTTTGCCCCCCGCCGCCGCGCAGCCCGCGCCGCGAGT
CATCATCGTCGGCGCCGGAGTGGCCGGCCTGTCGTGCGCACAGGAACTGG
TCAGCTCCGCGCCGGACGTCGACGTCGTCGTGCTTGAGGCCAGAAATCGC
GTCGGAGGGCGCATCTTCACGCACTGGCTCAACGTTGACGAACCTGCGGC
TCCGTTGCATCAAGCCTCCCCGCCGCCTTCCGCTCTTTCCCCCACGCATC
AGCCTGACCACGCGTCGGTTATCACCGCCGTCGCAGGCGCTTCGGACGCC
GCCAGTCCTGTGGCCGCTCTTAGCAGTGCCTCCTCGCAGTTCAACGACGC
TGCTCCGCTCAACCACGCCTCCCAGCATCCGTGGTATACGCCCGTGCATC
TCAACCAAGACGGTACTCTTTCGCCTTCGTTCCCGCCTCCTAAAACTGCT
CCGAGTGACTCGCAGCTCGACGGCGACTCCGCGCGCGCTTCACCGCACCG
ACACCCATTTATGGACCTCGTTAGCGGCGCAATCGAACCAGATCGAACAT
CACCCAATGGCTGTCCACGCTTGAGTGTTGACATTGGTGCCTCCATCATG
CATGGATGCGCAGATGAAAACCAACTTGTCTTCAAGCGAGCCATACAGAG
CCGTATTCGCGCACCCATTGTCGCTGGCGGCAGCTTCTACGAAAGCACCG
AACATGCACTCTGGTATGACCACAAGACCGGTCAACGAATCCCCACAGAG
ACCATCGTTGAAATGCATAACATATTTTTCATGGCCAGTCGTTATATGGC
TGCTGTGGCTTCCCGAAGCGATGATGGCGCGGGTGATATGCAGTCCATAT
TCGACTGCGGCGTTGAGTACGTGGCTGAGCATATGGACAATCGCAAGCTC
ACCCCCACAGAGTGCGCTGTCCTTAAGAAGATTTGTGCTAGAAGTATTGG
TTATTGCTCCCCAATGTCTGACATGGCACTGATGCAGGCGAGTGCCGGTA
TGGAGAAGGCCGGAACAGATGCTCATATTGGAATACCATATGAAGAAGAT
GATCCCCCATTCCCAGGTGAGATTCCTCCCATGACTCAAGCCAGTATCAA
AGCCCAAGCAGCTCGTTTCAATAGAGCTATTGCCGCAACCCAGAAAATAC
CACTCAATATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTC
TTAGATGGCTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCA
TATTCGTTTGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTC
GAATAGACCATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCC
AACAGGCCTGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGC
CGATCCAGAGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTG
AGGTGTATCAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTG
CGGAGCGAACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCAT
AGAGAAGCAAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAG
TAGTGTTGCGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCT
CAGCTAAATTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTA
TGGAAAGACAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCG
CAAATGGTTTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTT
GCAGTCCTGGGGGGGATCACGAATTGCATCAAATGCGATTGCTAA

protein sequence of Gcaud1994.t1

>Gcaud1994.t1 ID=Gcaud1994.t1|Name=Gcaud1994.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=615bp
MSPVALPPAAAQPAPRVIIVGAGVAGLSCAQELVSSAPDVDVVVLEARNR
VGGRIFTHWLNVDEPAAPLHQASPPPSALSPTHQPDHASVITAVAGASDA
ASPVAALSSASSQFNDAAPLNHASQHPWYTPVHLNQDGTLSPSFPPPKTA
PSDSQLDGDSARASPHRHPFMDLVSGAIEPDRTSPNGCPRLSVDIGASIM
HGCADENQLVFKRAIQSRIRAPIVAGGSFYESTEHALWYDHKTGQRIPTE
TIVEMHNIFFMASRYMAAVASRSDDGAGDMQSIFDCGVEYVAEHMDNRKL
TPTECAVLKKICARSIGYCSPMSDMALMQASAGMEKAGTDAHIGIPYEED
DPPFPGEIPPMTQASIKAQAARFNRAIAATQKIPLNMIASKKGGAGDRIV
LDGYTPFLIDRLKQGLHIRLKQSVCSVSKAVKPRIDHALAMEEPHSSAHA
NRPAKRARTHTLSNWDADPEVAQRTILVTTRSGEVYQGDFVVIAIPLGVL
RSEHEESSVSFSPPLSIEKQEAIRGMGMGIHNKVVLRFREEDIFWPPKVP
QLNCLDPRFQFFNMHCYGKTATILVHVFCESGFANGFWDLTDEGVLAEVL
AVLGGITNCIKCDC*

mRNA from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1994.t1 ID=Gcaud1994.t1|Name=Gcaud1994.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1907bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCCGTCGCTTTGCCCCCCGCCGCCGCGCAGCCCGCGCCGCGAGT
CATCATCGTCGGCGCCGGAGTGGCCGGCCTGTCGTGCGCACAGGAACTGG
TCAGCTCCGCGCCGGACGTCGACGTCGTCGTGCTTGAGGCCAGAAATCGC
GTCGGAGGGCGCATCTTCACGCACTGGCTCAACGTTGACGAACCTGCGGC
TCCGTTGCATCAAGCCTCCCCGCCGCCTTCCGCTCTTTCCCCCACGCATC
AGCCTGACCACGCGTCGGTTATCACCGCCGTCGCAGGCGCTTCGGACGCC
GCCAGTCCTGTGGCCGCTCTTAGCAGTGCCTCCTCGCAGTTCAACGACGC
TGCTCCGCTCAACCACGCCTCCCAGCATCCGTGGTATACGCCCGTGCATC
TCAACCAAGACGGTACTCTTTCGCCTTCGTTCCCGCCTCCTAAAACTGCT
CCGAGTGACTCGCAGCTCGACGGCGACTCCGCGCGCGCTTCACCGCACCG
ACACCCATTTATGGACCTCGTTAGCGGCGCAATCGAACCAGATCGAACAT
CACCCAATGGCTGTCCACGCTTGAGTGTTGACATTGGTGCCTCCATCATG
CATGGATGCGCAGATGAAAACCAACTTGTCTTCAAGCGAGCCATACAGAG
CCGTATTCGCGCACCCATTGTCGCTGGCGGCAGCTTCTACGAAAGCACCG
AACATGCACTCTGGTATGACCACAAGACCGGTCAACGAATCCCCACAGAG
ACCATCGTTGAAATGCATAACATATTTTTCATGGCCAGTCGTTATATGGC
TGCTGTGGCTTCCCGAAGCGATGATGGCGCGGGTGATATGCAGTCCATAT
TCGACTGCGGCGTTGAGTACGTGGCTGAGCATATGGACAATCGCAAGCTC
ACCCCCACAGAGTGCGCTGTCCTTAAGAAGATTTGTGCTAGAAGTATTGG
TTATTGCTCCCCAATGTCTGACATGGCACTGATGCAGGCGAGTGCCGGTA
TGGAGAAGGCCGGAACAGATGCTCATATTGGAATACCATATGAAGAAGAT
GATCCCCCATTCCCAGGTGAGATTCCTCCCATGACTCAAGCCAGTATCAA
AGCCCAAGCAGCTCGTTTCAATAGAGCTATTGCCGCAACCCAGAAAATAC
CACTCAATATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTC
TTAGATGGCTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCA
TATTCGTTTGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTC
GAATAGACCATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCC
AACAGGCCTGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGC
CGATCCAGAGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTG
AGGTGTATCAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTG
CGGAGCGAACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCAT
AGAGAAGCAAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAG
TAGTGTTGCGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCT
CAGCTAAATTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTA
TGGAAAGACAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCG
CAAATGGTTTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTT
GCAGTCCTGGGGGGTATGTTTTGTTCCCCGTCTGAAAACGGTACCATCAA
GCCGCAGACGAACACAACAGAGCAGGGATCACGAATTGCATCAAATGCGA
TTGCTAA

Coding sequence (CDS) from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+

>Gcaud1994.t1 ID=Gcaud1994.t1|Name=Gcaud1994.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1845bp|location=Sequence derived from alignment at NODE_5_length_105932_cov_4.447794:47794..49700+ (Gracilaria caudata M_176_S67 male)
ATGTCGCCCGTCGCTTTGCCCCCCGCCGCCGCGCAGCCCGCGCCGCGAGT
CATCATCGTCGGCGCCGGAGTGGCCGGCCTGTCGTGCGCACAGGAACTGG
TCAGCTCCGCGCCGGACGTCGACGTCGTCGTGCTTGAGGCCAGAAATCGC
GTCGGAGGGCGCATCTTCACGCACTGGCTCAACGTTGACGAACCTGCGGC
TCCGTTGCATCAAGCCTCCCCGCCGCCTTCCGCTCTTTCCCCCACGCATC
AGCCTGACCACGCGTCGGTTATCACCGCCGTCGCAGGCGCTTCGGACGCC
GCCAGTCCTGTGGCCGCTCTTAGCAGTGCCTCCTCGCAGTTCAACGACGC
TGCTCCGCTCAACCACGCCTCCCAGCATCCGTGGTATACGCCCGTGCATC
TCAACCAAGACGGTACTCTTTCGCCTTCGTTCCCGCCTCCTAAAACTGCT
CCGAGTGACTCGCAGCTCGACGGCGACTCCGCGCGCGCTTCACCGCACCG
ACACCCATTTATGGACCTCGTTAGCGGCGCAATCGAACCAGATCGAACAT
CACCCAATGGCTGTCCACGCTTGAGTGTTGACATTGGTGCCTCCATCATG
CATGGATGCGCAGATGAAAACCAACTTGTCTTCAAGCGAGCCATACAGAG
CCGTATTCGCGCACCCATTGTCGCTGGCGGCAGCTTCTACGAAAGCACCG
AACATGCACTCTGGTATGACCACAAGACCGGTCAACGAATCCCCACAGAG
ACCATCGTTGAAATGCATAACATATTTTTCATGGCCAGTCGTTATATGGC
TGCTGTGGCTTCCCGAAGCGATGATGGCGCGGGTGATATGCAGTCCATAT
TCGACTGCGGCGTTGAGTACGTGGCTGAGCATATGGACAATCGCAAGCTC
ACCCCCACAGAGTGCGCTGTCCTTAAGAAGATTTGTGCTAGAAGTATTGG
TTATTGCTCCCCAATGTCTGACATGGCACTGATGCAGGCGAGTGCCGGTA
TGGAGAAGGCCGGAACAGATGCTCATATTGGAATACCATATGAAGAAGAT
GATCCCCCATTCCCAGGTGAGATTCCTCCCATGACTCAAGCCAGTATCAA
AGCCCAAGCAGCTCGTTTCAATAGAGCTATTGCCGCAACCCAGAAAATAC
CACTCAATATGATAGCAAGCAAGAAAGGCGGAGCTGGCGATCGAATCGTC
TTAGATGGCTACACACCGTTTTTGATAGACCGTCTAAAACAGGGCCTCCA
TATTCGTTTGAAACAATCTGTTTGTAGCGTAAGCAAGGCAGTCAAGCCTC
GAATAGACCATGCACTTGCAATGGAGGAACCACACTCCTCAGCCCACGCC
AACAGGCCTGCAAAGAGAGCGAGAACACATACTTTGTCGAACTGGGACGC
CGATCCAGAGGTCGCTCAGAGAACCATTCTTGTAACCACGCGATCTGGTG
AGGTGTATCAAGGTGATTTTGTTGTCATTGCCATTCCTTTAGGCGTGTTG
CGGAGCGAACATGAGGAGAGCTCGGTTTCATTTTCGCCTCCTTTGTCCAT
AGAGAAGCAAGAGGCTATTCGAGGCATGGGTATGGGTATTCACAACAAAG
TAGTGTTGCGCTTTCGAGAGGAAGATATTTTTTGGCCTCCGAAGGTCCCT
CAGCTAAATTGTCTAGATCCTCGATTTCAATTCTTCAACATGCATTGCTA
TGGAAAGACAGCTACCATCCTAGTACACGTCTTTTGCGAGAGTGGTTTCG
CAAATGGTTTTTGGGACCTTACAGATGAGGGAGTGCTTGCCGAAGTGCTT
GCAGTCCTGGGGGGGATCACGAATTGCATCAAATGCGATTGCTAA