Gcaud8287.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8287.t1
Unique NameGcaud8287.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_572_length_21721_cov_4.382386contigNODE_572_length_21721_cov_4.382386:6585..7270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog118161.KB235922_gene1006
PFAMsPyridox_oxase_2
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00048,RC00116
KEGG koko:K00275
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
KEGG ModuleM00124
Evalue9.5e-32
EggNOG OGsCOG5135@1|root,COG5135@2|Bacteria,1G50T@1117|Cyanobacteria,3VJR2@52604|Pleurocapsales
EC1.4.3.5
DescriptionFMN-dependent enzyme, alr4036 family
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8287Gcaud8287Gracilaria caudata M_176_S67 malegeneNODE_572_length_21721_cov_4.382386 6585..7270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1Gcaud8287.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_572_length_21721_cov_4.382386 6585..7270 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1.start1Gcaud8287.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_572_length_21721_cov_4.382386 6585..6587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1.CDS1Gcaud8287.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 6585..6839 +
Gcaud8287.t1.CDS2Gcaud8287.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_572_length_21721_cov_4.382386 6932..7270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1.exon1Gcaud8287.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 6585..6839 +
Gcaud8287.t1.exon2Gcaud8287.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_572_length_21721_cov_4.382386 6932..7270 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1.intron1Gcaud8287.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_572_length_21721_cov_4.382386 6840..6931 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8287.t1.stop1Gcaud8287.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_572_length_21721_cov_4.382386 7268..7270 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8287.t1 ID=Gcaud8287.t1|Name=Gcaud8287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
MSRPPVWQKLIDSCLQQEGKPTSYFLQLATLTVSGEASCRTVVFRGWDVT
TSKSTPSLLIATDSRSAKVKGLLEYPKAEACWYFRDARVQFRLTTYVSVI
SSDETNDDLFNLRSRKWRDLSPNAREVYACPPPGRPHEHEFSEEAKAEVA
NSNEPIEWFAVLMLKPERVDVVDLRANTRSLFELGKDGDWVENSINR*
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spliced messenger RNA

>Gcaud8287.t1 ID=Gcaud8287.t1|Name=Gcaud8287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=594bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:6585..7270+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGACCGCCGGTGTGGCAAAAACTTATCGATTCCTGTCTCCAGCA
AGAAGGGAAGCCAACCTCATACTTTTTGCAGCTGGCCACCCTCACCGTGT
CTGGTGAAGCATCGTGCAGGACAGTCGTATTTCGAGGCTGGGATGTCACA
ACCTCAAAGTCAACACCTAGTCTGCTAATCGCCACCGATAGTAGAAGTGC
CAAAGTAAAAGGTCTGCTCGAGTACCCCAAAGCCGAGGCATGTTGGTACT
TTCGTGATGCCCGAGTTCAGTTTCGGTTGACAACATATGTAAGCGTTATC
AGCAGCGACGAAACCAACGATGATTTGTTCAATCTTCGCTCGAGGAAATG
GCGAGATCTTTCACCAAATGCGCGCGAAGTTTATGCGTGTCCCCCTCCGG
GTCGCCCACATGAGCATGAATTTTCGGAAGAGGCAAAAGCGGAGGTTGCG
AATAGCAACGAGCCCATCGAGTGGTTTGCGGTCCTGATGCTGAAACCTGA
GCGAGTGGACGTCGTAGACCTTCGTGCAAATACCAGAAGTTTGTTTGAAT
TGGGTAAAGACGGCGATTGGGTTGAGAACAGCATAAATCGTTGA
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protein sequence of Gcaud8287.t1

>Gcaud8287.t1 ID=Gcaud8287.t1|Name=Gcaud8287.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MSRPPVWQKLIDSCLQQEGKPTSYFLQLATLTVSGEASCRTVVFRGWDVT
TSKSTPSLLIATDSRSAKVKGLLEYPKAEACWYFRDARVQFRLTTYVSVI
SSDETNDDLFNLRSRKWRDLSPNAREVYACPPPGRPHEHEFSEEAKAEVA
NSNEPIEWFAVLMLKPERVDVVDLRANTRSLFELGKDGDWVENSINR*
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mRNA from alignment at NODE_572_length_21721_cov_4.382386:6585..7270+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8287.t1 ID=Gcaud8287.t1|Name=Gcaud8287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=686bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:6585..7270+ (Gracilaria caudata M_176_S67 male)
ATGTCCAGACCGCCGGTGTGGCAAAAACTTATCGATTCCTGTCTCCAGCA
AGAAGGGAAGCCAACCTCATACTTTTTGCAGCTGGCCACCCTCACCGTGT
CTGGTGAAGCATCGTGCAGGACAGTCGTATTTCGAGGCTGGGATGTCACA
ACCTCAAAGTCAACACCTAGTCTGCTAATCGCCACCGATAGTAGAAGTGC
CAAAGTAAAAGGTCTGCTCGAGTACCCCAAAGCCGAGGCATGTTGGTACT
TTCGTGTACGTCCTTTCTCATCACAACATATATGCCCCCCCCCCTCAAAC
CTTCTAACCGTCTTGTGTAATGTCTCGTCTCTCGTTATGCCTGACAGGAT
GCCCGAGTTCAGTTTCGGTTGACAACATATGTAAGCGTTATCAGCAGCGA
CGAAACCAACGATGATTTGTTCAATCTTCGCTCGAGGAAATGGCGAGATC
TTTCACCAAATGCGCGCGAAGTTTATGCGTGTCCCCCTCCGGGTCGCCCA
CATGAGCATGAATTTTCGGAAGAGGCAAAAGCGGAGGTTGCGAATAGCAA
CGAGCCCATCGAGTGGTTTGCGGTCCTGATGCTGAAACCTGAGCGAGTGG
ACGTCGTAGACCTTCGTGCAAATACCAGAAGTTTGTTTGAATTGGGTAAA
GACGGCGATTGGGTTGAGAACAGCATAAATCGTTGA
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Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:6585..7270+

>Gcaud8287.t1 ID=Gcaud8287.t1|Name=Gcaud8287.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=594bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:6585..7270+ (Gracilaria caudata M_176_S67 male)
ATGTCCAGACCGCCGGTGTGGCAAAAACTTATCGATTCCTGTCTCCAGCA
AGAAGGGAAGCCAACCTCATACTTTTTGCAGCTGGCCACCCTCACCGTGT
CTGGTGAAGCATCGTGCAGGACAGTCGTATTTCGAGGCTGGGATGTCACA
ACCTCAAAGTCAACACCTAGTCTGCTAATCGCCACCGATAGTAGAAGTGC
CAAAGTAAAAGGTCTGCTCGAGTACCCCAAAGCCGAGGCATGTTGGTACT
TTCGTGATGCCCGAGTTCAGTTTCGGTTGACAACATATGTAAGCGTTATC
AGCAGCGACGAAACCAACGATGATTTGTTCAATCTTCGCTCGAGGAAATG
GCGAGATCTTTCACCAAATGCGCGCGAAGTTTATGCGTGTCCCCCTCCGG
GTCGCCCACATGAGCATGAATTTTCGGAAGAGGCAAAAGCGGAGGTTGCG
AATAGCAACGAGCCCATCGAGTGGTTTGCGGTCCTGATGCTGAAACCTGA
GCGAGTGGACGTCGTAGACCTTCGTGCAAATACCAGAAGTTTGTTTGAAT
TGGGTAAAGACGGCGATTGGGTTGAGAACAGCATAAATCGTTGA
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