Gcaud8288.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8288.t1
Unique Name	Gcaud8288.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_572_length_21721_cov_4.382386	contig	NODE_572_length_21721_cov_4.382386:7571..8419 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705788.1
PFAMs	LRR_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10268
Evalue	5.35e-10
EggNOG OGs	KOG1947@1\|root,KOG1947@2759\|Eukaryota
Description	F-box LRR-repeat protein
COG category	B
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8288	Gcaud8288	Gracilaria caudata M_176_S67 male	gene	NODE_572_length_21721_cov_4.382386 7571..8419 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8288.t1.stop1	Gcaud8288.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_572_length_21721_cov_4.382386 7571..7573 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8288.t1.CDS1	Gcaud8288.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_572_length_21721_cov_4.382386 7571..8419 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8288.t1.exon1	Gcaud8288.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_572_length_21721_cov_4.382386 7571..8419 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8288.t1.start1	Gcaud8288.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_572_length_21721_cov_4.382386 8417..8419 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8288.t1	Gcaud8288.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_572_length_21721_cov_4.382386 7571..8419 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_572_length_21721_cov_4.382386:7571..8419-
coding sequence from alignment at NODE_572_length_21721_cov_4.382386:7571..8419-

mRNA sequence

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MLRPSSLIDLPDDVLLRILSNSGSLREQVGTAFRLASVCNRLRRLIFTNY
LAKLSHISSDAIYTLSLADANAARTAIDSMFVATVSLKTLNLSGCAPGLI
SHRAISSLVRVARHSLVEVNFAHCNLMSDDVLQPLMTCPNLKRLILPSCR
ITGSMFRHSGTVAPVEELDLSWVHSLTQGGVQAVATIVTLKRLCFKGCDS
VDDDAFQAFSKSDVSKSLEVVSLAFCPISNNCLLNFLGCAPRLKELVLAE
NRGNIWPQGLYTQAGIDAIRARHPAVKIAFIS*

spliced messenger RNA

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:7571..8419- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTCCTTCGAGTCTGATAGATTTGCCCGACGACGTGTTACTGCG
CATACTTTCTAATTCGGGATCCCTTCGAGAGCAGGTTGGAACCGCGTTTC
GTCTGGCTTCAGTTTGTAATCGTCTTCGTCGTCTTATTTTCACCAACTAT
CTGGCAAAATTATCGCACATATCTTCCGATGCTATCTATACGCTTTCTCT
GGCGGACGCAAATGCCGCGAGAACTGCAATTGACTCCATGTTTGTTGCTA
CCGTCTCGTTGAAAACTCTGAATCTAAGCGGTTGTGCGCCCGGTCTTATT
TCACATCGGGCCATCTCATCACTGGTTCGAGTGGCGCGTCATTCGCTTGT
TGAAGTCAACTTTGCGCATTGTAATTTGATGAGTGATGACGTATTGCAAC
CGCTCATGACATGTCCTAATCTAAAGCGTCTCATTCTTCCAAGTTGTCGG
ATAACCGGCTCCATGTTCCGTCACTCAGGAACCGTCGCACCAGTCGAAGA
ACTGGATTTATCGTGGGTACATTCTCTGACTCAAGGAGGTGTACAAGCAG
TGGCAACCATCGTAACATTGAAACGGCTTTGTTTTAAAGGGTGTGATAGC
GTTGATGATGACGCCTTTCAGGCTTTTTCGAAATCTGATGTTTCTAAATC
ACTAGAGGTTGTCTCACTCGCTTTTTGTCCTATAAGTAATAACTGTCTTC
TCAACTTTCTCGGCTGCGCTCCTCGACTAAAAGAACTTGTTCTTGCTGAG
AATCGGGGGAATATTTGGCCGCAAGGTCTTTACACACAGGCTGGGATCGA
TGCTATTAGGGCTCGACACCCAGCAGTGAAGATCGCCTTTATTTCCTGA

protein sequence of Gcaud8288.t1

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MLRPSSLIDLPDDVLLRILSNSGSLREQVGTAFRLASVCNRLRRLIFTNY
LAKLSHISSDAIYTLSLADANAARTAIDSMFVATVSLKTLNLSGCAPGLI
SHRAISSLVRVARHSLVEVNFAHCNLMSDDVLQPLMTCPNLKRLILPSCR
ITGSMFRHSGTVAPVEELDLSWVHSLTQGGVQAVATIVTLKRLCFKGCDS
VDDDAFQAFSKSDVSKSLEVVSLAFCPISNNCLLNFLGCAPRLKELVLAE
NRGNIWPQGLYTQAGIDAIRARHPAVKIAFIS*

mRNA from alignment at NODE_572_length_21721_cov_4.382386:7571..8419-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:7571..8419- (Gracilaria caudata M_176_S67 male)
ATGTTGCGTCCTTCGAGTCTGATAGATTTGCCCGACGACGTGTTACTGCG
CATACTTTCTAATTCGGGATCCCTTCGAGAGCAGGTTGGAACCGCGTTTC
GTCTGGCTTCAGTTTGTAATCGTCTTCGTCGTCTTATTTTCACCAACTAT
CTGGCAAAATTATCGCACATATCTTCCGATGCTATCTATACGCTTTCTCT
GGCGGACGCAAATGCCGCGAGAACTGCAATTGACTCCATGTTTGTTGCTA
CCGTCTCGTTGAAAACTCTGAATCTAAGCGGTTGTGCGCCCGGTCTTATT
TCACATCGGGCCATCTCATCACTGGTTCGAGTGGCGCGTCATTCGCTTGT
TGAAGTCAACTTTGCGCATTGTAATTTGATGAGTGATGACGTATTGCAAC
CGCTCATGACATGTCCTAATCTAAAGCGTCTCATTCTTCCAAGTTGTCGG
ATAACCGGCTCCATGTTCCGTCACTCAGGAACCGTCGCACCAGTCGAAGA
ACTGGATTTATCGTGGGTACATTCTCTGACTCAAGGAGGTGTACAAGCAG
TGGCAACCATCGTAACATTGAAACGGCTTTGTTTTAAAGGGTGTGATAGC
GTTGATGATGACGCCTTTCAGGCTTTTTCGAAATCTGATGTTTCTAAATC
ACTAGAGGTTGTCTCACTCGCTTTTTGTCCTATAAGTAATAACTGTCTTC
TCAACTTTCTCGGCTGCGCTCCTCGACTAAAAGAACTTGTTCTTGCTGAG
AATCGGGGGAATATTTGGCCGCAAGGTCTTTACACACAGGCTGGGATCGA
TGCTATTAGGGCTCGACACCCAGCAGTGAAGATCGCCTTTATTTCCTGA

Coding sequence (CDS) from alignment at NODE_572_length_21721_cov_4.382386:7571..8419-

>Gcaud8288.t1 ID=Gcaud8288.t1|Name=Gcaud8288.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_572_length_21721_cov_4.382386:7571..8419- (Gracilaria caudata M_176_S67 male)
ATGTTGCGTCCTTCGAGTCTGATAGATTTGCCCGACGACGTGTTACTGCG
CATACTTTCTAATTCGGGATCCCTTCGAGAGCAGGTTGGAACCGCGTTTC
GTCTGGCTTCAGTTTGTAATCGTCTTCGTCGTCTTATTTTCACCAACTAT
CTGGCAAAATTATCGCACATATCTTCCGATGCTATCTATACGCTTTCTCT
GGCGGACGCAAATGCCGCGAGAACTGCAATTGACTCCATGTTTGTTGCTA
CCGTCTCGTTGAAAACTCTGAATCTAAGCGGTTGTGCGCCCGGTCTTATT
TCACATCGGGCCATCTCATCACTGGTTCGAGTGGCGCGTCATTCGCTTGT
TGAAGTCAACTTTGCGCATTGTAATTTGATGAGTGATGACGTATTGCAAC
CGCTCATGACATGTCCTAATCTAAAGCGTCTCATTCTTCCAAGTTGTCGG
ATAACCGGCTCCATGTTCCGTCACTCAGGAACCGTCGCACCAGTCGAAGA
ACTGGATTTATCGTGGGTACATTCTCTGACTCAAGGAGGTGTACAAGCAG
TGGCAACCATCGTAACATTGAAACGGCTTTGTTTTAAAGGGTGTGATAGC
GTTGATGATGACGCCTTTCAGGCTTTTTCGAAATCTGATGTTTCTAAATC
ACTAGAGGTTGTCTCACTCGCTTTTTGTCCTATAAGTAATAACTGTCTTC
TCAACTTTCTCGGCTGCGCTCCTCGACTAAAAGAACTTGTTCTTGCTGAG
AATCGGGGGAATATTTGGCCGCAAGGTCTTTACACACAGGCTGGGATCGA
TGCTATTAGGGCTCGACACCCAGCAGTGAAGATCGCCTTTATTTCCTGA