Gcaud7580.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud7580.t1
Unique Name	Gcaud7580.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	314

Homology

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BLAST of Gcaud7580.t1 vs. uniprot
Match: A0A2V3J1J0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1J0_9FLOR)

HSP 1 Score: 156 bits (395), Expect = 4.040e-42
Identity = 125/312 (40.06%), Postives = 166/312 (53.21%), Query Frame = 0

Query:   12 SEAREEKRLSQESSDDSYATRLAGSFYGDDSDSQEKHFNSPVLNALDDQHASTQLSDGSSQPLFPTPPHSRVTSLSPRNNETAIRANETVVQGVID---------DDLEEGVPVKTSRGTRPSLPTRGNRSSLRPYNLPFRSSAAPTSPTSKRH-ETRILPSGLKPPRPQPRIAPLPPL-ESGSASSTPPDSPRRSSEDSFATPVQATLSEQTPPAPTPPQTPDRQNDEEAPLQTDAVLERRHHRQKQLSCKGIMLLGFGLTALIGPFSMLVPVLWPEYRKRRAFASFSVGVLSALVVWLAFSIVLALVLVN 312
            S+++E K  S +SS+DS  TR+A    G   DS E+                     G S+P    PP  RV  L P    ++  +   VV G I+         DDLE+GVP + S+  RP   T     +LR     F  S    SP +     +RI  SGLKPPRPQPRIAP+PP+  S S+S +   S     E S        +S+   PAPTPP TPDRQ DEEAP     +  +   ++K  S    ML+GFGLTA++GP S+LVPV WP+YR+R+ FA+F +GVLSAL  WL F+I+LA+V+ N
Sbjct:   10 SKSKEPKPFSTDSSEDSNETRIAKDDQGKVDDSIERSL-------------LPSKETGKSKPFPIEPPKPRVKPLQPEAPLSS--SGSEVVLGQIENRSDASRERDDLEDGVPTRNSKTKRPHPST-----TLRSKPHAFGRSDVSKSPLADVILRSRIPASGLKPPRPQPRIAPMPPIANSPSSSFSGSSSAGEEGEPSKEYESVIPMSDVASPAPTPPGTPDRQADEEAPFDRTPIPSKT--KRKARSSARTMLVGFGLTAVVGPVSLLVPVFWPKYRERKTFAAFVIGVLSALSAWLVFAIILAIVVAN 299

The following BLAST results are available for this feature:

BLAST of Gcaud7580.t1 vs. uniprot

BLAST of Gcaud7580.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J1J0_9FLOR	4.040e-42	40.06	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..244
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..244
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 312..313
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 277..287
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 254..276
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 288..311
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..253
None	No IPR available	TMHMM	TMhelix		coord: 289..311
None	No IPR available	TMHMM	TMhelix		coord: 254..276

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1159_length_13173_cov_4.339703	contig	NODE_1159_length_13173_cov_4.339703:4375..5316 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7580.t1	Gcaud7580.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_1159_length_13173_cov_4.339703 4375..5316 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud7580.t1 ID=Gcaud7580.t1|Name=Gcaud7580.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=314bp
MGQQSSQEANDSEAREEKRLSQESSDDSYATRLAGSFYGDDSDSQEKHFN
SPVLNALDDQHASTQLSDGSSQPLFPTPPHSRVTSLSPRNNETAIRANET
VVQGVIDDDLEEGVPVKTSRGTRPSLPTRGNRSSLRPYNLPFRSSAAPTS
PTSKRHETRILPSGLKPPRPQPRIAPLPPLESGSASSTPPDSPRRSSEDS
FATPVQATLSEQTPPAPTPPQTPDRQNDEEAPLQTDAVLERRHHRQKQLS
CKGIMLLGFGLTALIGPFSMLVPVLWPEYRKRRAFASFSVGVLSALVVWL
AFSIVLALVLVNQ*