Gcaud1462.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1462.t1
Unique Name	Gcaud1462.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	457

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:15254..17741 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10228.TriadP23299
Preferred name	TUBGCP2
PFAMs	Spc97_Spc98
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K16569
GOs	GO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005881,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007276,GO:0007283,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030953,GO:0031023,GO:0031109,GO:0031122,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032504,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044703,GO:0046785,GO:0048232,GO:0048285,GO:0048609,GO:0050789,GO:0050794,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051704,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
Evalue	1.38e-09
EggNOG OGs	KOG2001@1\|root,KOG2001@2759\|Eukaryota,38DYI@33154\|Opisthokonta,3B9AM@33208\|Metazoa
Description	microtubule nucleation by interphase microtubule organizing center
COG category	Z
BRITE	ko00000,ko03036,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1462	Gcaud1462	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 15254..17741 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1	Gcaud1462.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 15254..17741 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1.start1	Gcaud1462.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 15254..15256 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1.CDS1	Gcaud1462.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 15254..16540 +
Gcaud1462.t1.CDS2	Gcaud1462.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 17380..17422 +
Gcaud1462.t1.CDS3	Gcaud1462.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 17701..17741 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1.exon1	Gcaud1462.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 15254..16540 +
Gcaud1462.t1.exon2	Gcaud1462.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 17380..17422 +
Gcaud1462.t1.exon3	Gcaud1462.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 17701..17741 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1.intron1	Gcaud1462.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_566_length_21798_cov_4.589994 16541..17379 +
Gcaud1462.t1.intron2	Gcaud1462.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_566_length_21798_cov_4.589994 17423..17700 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1462.t1.stop1	Gcaud1462.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 17739..17741 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+

mRNA sequence

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=457bp
MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILR
GQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKAT
KCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNI
SQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRA
KSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILAS
RAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVE
LFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAAL
FDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKD
TSWSESVCSETVEAVERVEKDFNRNYHLLLGLLKSSVKPYRLTLLFKVDD
KLVTFV*

spliced messenger RNA

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGCTTGGTCTGCTCA
AATCAAGCGTGAAACCGTATCGTCTGACCTTGCTTTTCAAGGTCGACGAC
AAACTTGTCACTTTTGTGTGA

protein sequence of Gcaud1462.t1

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=457bp
MEKCFTTKDGFLPICQIWDVLYKTMLTLSADSQPYRTLRHVWNDVITILR
GQLFLLLVHARISDPHNEFFISSSSVVEENLPSFITVEVAENIYSAYKAT
KCTISLSDRDASFSIYPTDEFKHLLSDPVSAQLQIESAAVRWCRRASQNI
SQVFPFLKVKDRIRSLRRYLLHGESSFWRFFFDTLRSTSLPPLTSPESRA
KSEKVLNRILQMTITEYGVTGPLFELEIREKGDIIPTFTLSFVESQILAS
RAHVYCDLFSVTFSIRRAACELQAIYMELQAHRKRMTAAGQFQTAKWYVE
LFELRRRMACFIEGYEWYIQAHVLQPSIDSVLACLSGEGLKGVRCRRAAL
FDTAVEHHEETMDRLLTQCFVGERVIMARLQAIVSACLSVGELVRGLPKD
TSWSESVCSETVEAVERVEKDFNRNYHLLLGLLKSSVKPYRLTLLFKVDD
KLVTFV*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2488bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGGTACGCATGTTGA
CTGGTCTTGAGAAGCGCGCCTGCGGGCCGAAGCTGACGATCTTACTGCAA
CAGATTGGGTTGGACGGTGAGCGCGGACGGTAGAGATGGACGCGGGCGAA
GACTCGCACGTCAGGGGAAGCATCCGCCGAGGCAGAGAGGCGCAGAGAAA
CACACCGGCACGGTGTGTTTCGCTGCAAAAAATTGAGTGAAAATGATGAG
AGGCTGAGAAGGACACGTGGAACAAGCGCGTGGCAGCCAGTGGACCACCC
ATGCTGCGTTTTCGGAACATTGACGAACATTGGCGCGCAAATCCAATTCG
AAACCAGCCGGCGGCGGCGTGGATGGTGCCGCACCCTCCACCTTTCGTGG
CGCCAAAGTTCGCGCTAACGGCCGAAGACCGTAACTTGCTCTACGCCTTC
GCCACCTCTGTGACCTGCGCGCGCGCCATTCTTGTCGGAGGCGACGGCTA
CGGCTTCCTAGCACCTTCCTTCCGCATCTTGTTCCAACCACGCGCGCCTC
CGCAGCCCGCGCTCCGTCGCTTCAAAACCTGCGTTTCCGCGCCACTTTCC
TTAGTTTGCCTGCTGTACAGTGACGCCTTGCCCCTGCAGGCTACGCGCTG
ACCCACCTGCCAACCAATTTTTTTTTTTCAAGTCTCGGCCGCGCCGGCTC
TCAACTTCATACAGCCGCCCTTAACCAGCCGCGCTTTCTTCATCCGAACA
GGAGTGCAAACTATTCCGTGCTCGTGTTTAGAGCCAACCGGGGGCTTACA
GTGACCGGCGCGAACCTGCACTCGAGGTCGCGACCCATCTTCGAGGTGTG
TCCTCAATGGCGCCAGTTGTCGACAGCTTGGTCTGCTCAAATCAAGCGTG
AAACCGTATCGTCTGACCTGTACGTTCTCCAACATCTTGGTAATCTGCGA
GATCTTTGCTGTGCACCATCAGCTTTCTACAACTCTGTTGCACGCCGCCC
AATCCGAAAACTCGCAAAACGCACTTTTTGAATTCGATTTTCCCGCCTTT
CACTTTTCTAACCCAATGCTTTCTCTTCTTGAACATCATTACGCGCGTCA
TCTCCCCTGTTCTCGTACATTCTTTTATGCGTACATGCGAATCCCTGTCT
CTCCTTAATCTTACAACCCGTCGTTTTTAATCTTTAAAAATGCGAAGTGC
TTTTCAAGGTCGACGACAAACTTGTCACTTTTGTGTGA

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+

>Gcaud1462.t1 ID=Gcaud1462.t1|Name=Gcaud1462.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1371bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:15254..17741+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAATGCTTCACAACCAAAGATGGCTTTCTTCCAATATGTCAAAT
ATGGGATGTTCTCTACAAGACCATGCTTACTTTGTCTGCAGACTCCCAGC
CGTACAGAACGCTCCGTCATGTTTGGAATGACGTGATAACGATTTTGCGA
GGTCAACTGTTCCTGTTACTGGTTCATGCTCGCATTTCCGATCCTCACAA
TGAGTTCTTCATCTCATCATCTTCAGTTGTGGAAGAAAACCTACCGTCGT
TTATTACTGTTGAAGTCGCAGAAAACATTTACTCAGCTTATAAGGCCACG
AAATGCACTATTTCATTGTCAGACCGAGATGCTTCTTTTTCGATATATCC
AACGGATGAGTTCAAACACCTCTTGTCAGATCCAGTATCCGCGCAGCTCC
AGATAGAATCGGCAGCAGTTCGATGGTGTCGAAGAGCGTCTCAAAACATT
TCCCAAGTGTTCCCATTTCTAAAAGTGAAGGATCGAATTAGAAGTCTCCG
CAGATATTTGCTGCACGGGGAGTCCTCCTTCTGGCGGTTTTTCTTTGACA
CGCTGAGAAGTACCTCTCTTCCTCCACTGACTTCCCCAGAATCTCGTGCA
AAGTCGGAAAAGGTTCTGAACCGAATACTTCAAATGACTATCACTGAGTA
CGGGGTCACTGGTCCACTGTTCGAACTTGAGATTCGCGAGAAGGGAGATA
TAATTCCTACTTTCACTCTCTCATTCGTTGAGAGCCAAATCCTTGCTTCA
AGGGCTCATGTGTACTGTGACCTGTTTTCTGTGACGTTCTCCATTCGACG
GGCTGCGTGCGAGCTGCAGGCGATCTACATGGAGCTGCAGGCGCACAGAA
AAAGGATGACAGCCGCAGGGCAGTTTCAAACAGCCAAATGGTACGTGGAA
CTGTTTGAACTACGGCGAAGAATGGCGTGCTTCATTGAAGGTTATGAGTG
GTACATTCAAGCTCATGTGCTACAGCCAAGCATTGACAGCGTTCTAGCTT
GTCTGTCTGGGGAAGGCTTGAAAGGTGTAAGATGCAGACGGGCCGCCTTG
TTCGATACGGCAGTAGAACATCACGAGGAAACTATGGACAGGCTGTTAAC
ACAATGTTTTGTTGGGGAGAGGGTGATCATGGCCCGGCTACAGGCCATTG
TATCGGCTTGTCTCAGTGTGGGTGAGTTAGTTCGCGGGCTTCCGAAGGAT
ACATCTTGGAGTGAATCAGTGTGTTCAGAAACTGTTGAAGCTGTTGAGCG
CGTCGAGAAGGACTTCAACCGCAACTATCACCTACTGCTTGGTCTGCTCA
AATCAAGCGTGAAACCGTATCGTCTGACCTTGCTTTTCAAGGTCGACGAC
AAACTTGTCACTTTTGTGTGA